Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17655

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17645 and QEN71_RS17650 are separated by 11 nucleotidesQEN71_RS17650 and QEN71_RS17655 are separated by 32 nucleotidesQEN71_RS17655 and QEN71_RS17660 are separated by 82 nucleotides QEN71_RS17645: QEN71_RS17645 - tryptophan synthase subunit beta, at 3,922,966 to 3,924,159 _RS17645 QEN71_RS17650: QEN71_RS17650 - site-specific DNA-methyltransferase, at 3,924,171 to 3,925,091 _RS17650 QEN71_RS17655: QEN71_RS17655 - tryptophan synthase subunit alpha, at 3,925,124 to 3,925,939 _RS17655 QEN71_RS17660: QEN71_RS17660 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,926,022 to 3,926,894 _RS17660 Position (kb) 3925 3926Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3924.372 kb on + strand, within QEN71_RS17650at 3924.372 kb on + strand, within QEN71_RS17650at 3924.373 kb on - strand, within QEN71_RS17650at 3924.373 kb on - strand, within QEN71_RS17650at 3924.391 kb on - strand, within QEN71_RS17650at 3924.391 kb on - strand, within QEN71_RS17650at 3924.391 kb on - strand, within QEN71_RS17650at 3924.492 kb on + strand, within QEN71_RS17650at 3924.492 kb on + strand, within QEN71_RS17650at 3924.492 kb on + strand, within QEN71_RS17650at 3924.493 kb on - strand, within QEN71_RS17650at 3924.493 kb on - strand, within QEN71_RS17650at 3924.493 kb on - strand, within QEN71_RS17650at 3924.493 kb on - strand, within QEN71_RS17650at 3924.617 kb on + strand, within QEN71_RS17650at 3924.617 kb on + strand, within QEN71_RS17650at 3924.664 kb on - strand, within QEN71_RS17650at 3924.696 kb on + strand, within QEN71_RS17650at 3924.765 kb on + strand, within QEN71_RS17650at 3924.766 kb on - strand, within QEN71_RS17650at 3925.132 kb on + strandat 3925.427 kb on + strand, within QEN71_RS17655at 3925.535 kb on - strand, within QEN71_RS17655at 3925.535 kb on - strand, within QEN71_RS17655at 3925.592 kb on - strand, within QEN71_RS17655at 3925.592 kb on - strand, within QEN71_RS17655at 3925.592 kb on - strand, within QEN71_RS17655at 3925.624 kb on + strand, within QEN71_RS17655at 3925.624 kb on + strand, within QEN71_RS17655at 3925.624 kb on + strand, within QEN71_RS17655at 3925.624 kb on + strand, within QEN71_RS17655at 3925.625 kb on - strand, within QEN71_RS17655at 3925.625 kb on - strand, within QEN71_RS17655at 3925.625 kb on - strand, within QEN71_RS17655at 3925.640 kb on + strand, within QEN71_RS17655at 3925.641 kb on - strand, within QEN71_RS17655at 3925.646 kb on + strand, within QEN71_RS17655at 3925.646 kb on + strand, within QEN71_RS17655at 3925.646 kb on + strand, within QEN71_RS17655at 3925.646 kb on + strand, within QEN71_RS17655at 3925.646 kb on + strand, within QEN71_RS17655at 3925.647 kb on - strand, within QEN71_RS17655at 3925.647 kb on - strand, within QEN71_RS17655at 3925.647 kb on - strand, within QEN71_RS17655at 3925.647 kb on - strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.649 kb on + strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.650 kb on - strand, within QEN71_RS17655at 3925.653 kb on + strand, within QEN71_RS17655at 3925.653 kb on + strand, within QEN71_RS17655at 3925.654 kb on - strand, within QEN71_RS17655at 3925.654 kb on - strand, within QEN71_RS17655at 3925.734 kb on + strand, within QEN71_RS17655at 3926.914 kb on + strandat 3926.914 kb on + strandat 3926.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,924,372 + QEN71_RS17650 0.22 +0.3
3,924,372 + QEN71_RS17650 0.22 -0.6
3,924,373 - QEN71_RS17650 0.22 -0.1
3,924,373 - QEN71_RS17650 0.22 -0.4
3,924,391 - QEN71_RS17650 0.24 -0.6
3,924,391 - QEN71_RS17650 0.24 -0.6
3,924,391 - QEN71_RS17650 0.24 -0.9
3,924,492 + QEN71_RS17650 0.35 +1.6
3,924,492 + QEN71_RS17650 0.35 -0.1
3,924,492 + QEN71_RS17650 0.35 +0.9
3,924,493 - QEN71_RS17650 0.35 -2.1
3,924,493 - QEN71_RS17650 0.35 -2.3
3,924,493 - QEN71_RS17650 0.35 -0.9
3,924,493 - QEN71_RS17650 0.35 -0.1
3,924,617 + QEN71_RS17650 0.48 +0.7
3,924,617 + QEN71_RS17650 0.48 -0.4
3,924,664 - QEN71_RS17650 0.54 -1.5
3,924,696 + QEN71_RS17650 0.57 -0.4
3,924,765 + QEN71_RS17650 0.64 +0.4
3,924,766 - QEN71_RS17650 0.65 -1.2
3,925,132 + -3.4
3,925,427 + QEN71_RS17655 0.37 -2.1
3,925,535 - QEN71_RS17655 0.50 -4.5
3,925,535 - QEN71_RS17655 0.50 -0.4
3,925,592 - QEN71_RS17655 0.57 -2.3
3,925,592 - QEN71_RS17655 0.57 -2.1
3,925,592 - QEN71_RS17655 0.57 -3.3
3,925,624 + QEN71_RS17655 0.61 -1.8
3,925,624 + QEN71_RS17655 0.61 -4.0
3,925,624 + QEN71_RS17655 0.61 -4.7
3,925,624 + QEN71_RS17655 0.61 -3.8
3,925,625 - QEN71_RS17655 0.61 -2.8
3,925,625 - QEN71_RS17655 0.61 -0.9
3,925,625 - QEN71_RS17655 0.61 -3.0
3,925,640 + QEN71_RS17655 0.63 -3.7
3,925,641 - QEN71_RS17655 0.63 -1.2
3,925,646 + QEN71_RS17655 0.64 -4.1
3,925,646 + QEN71_RS17655 0.64 -0.6
3,925,646 + QEN71_RS17655 0.64 -1.1
3,925,646 + QEN71_RS17655 0.64 -3.6
3,925,646 + QEN71_RS17655 0.64 -1.1
3,925,647 - QEN71_RS17655 0.64 -1.4
3,925,647 - QEN71_RS17655 0.64 -2.1
3,925,647 - QEN71_RS17655 0.64 -2.3
3,925,647 - QEN71_RS17655 0.64 -1.1
3,925,649 + QEN71_RS17655 0.64 -3.9
3,925,649 + QEN71_RS17655 0.64 -2.8
3,925,649 + QEN71_RS17655 0.64 -1.5
3,925,649 + QEN71_RS17655 0.64 -2.6
3,925,649 + QEN71_RS17655 0.64 -4.4
3,925,649 + QEN71_RS17655 0.64 -2.5
3,925,649 + QEN71_RS17655 0.64 -2.1
3,925,649 + QEN71_RS17655 0.64 -0.9
3,925,649 + QEN71_RS17655 0.64 -4.8
3,925,649 + QEN71_RS17655 0.64 -2.9
3,925,649 + QEN71_RS17655 0.64 -3.4
3,925,649 + QEN71_RS17655 0.64 -4.3
3,925,649 + QEN71_RS17655 0.64 -5.6
3,925,649 + QEN71_RS17655 0.64 -4.1
3,925,649 + QEN71_RS17655 0.64 -3.4
3,925,649 + QEN71_RS17655 0.64 -2.9
3,925,649 + QEN71_RS17655 0.64 -2.2
3,925,649 + QEN71_RS17655 0.64 -1.9
3,925,649 + QEN71_RS17655 0.64 -1.2
3,925,649 + QEN71_RS17655 0.64 -0.1
3,925,649 + QEN71_RS17655 0.64 -1.9
3,925,649 + QEN71_RS17655 0.64 -2.9
3,925,649 + QEN71_RS17655 0.64 -4.3
3,925,649 + QEN71_RS17655 0.64 -3.7
3,925,649 + QEN71_RS17655 0.64 -2.4
3,925,649 + QEN71_RS17655 0.64 -3.4
3,925,649 + QEN71_RS17655 0.64 -1.2
3,925,649 + QEN71_RS17655 0.64 -3.5
3,925,649 + QEN71_RS17655 0.64 -4.4
3,925,649 + QEN71_RS17655 0.64 -2.8
3,925,649 + QEN71_RS17655 0.64 -4.5
3,925,649 + QEN71_RS17655 0.64 -2.4
3,925,649 + QEN71_RS17655 0.64 -0.4
3,925,650 - QEN71_RS17655 0.64 -0.9
3,925,650 - QEN71_RS17655 0.64 -0.4
3,925,650 - QEN71_RS17655 0.64 -2.1
3,925,650 - QEN71_RS17655 0.64 -2.3
3,925,650 - QEN71_RS17655 0.64 -1.8
3,925,650 - QEN71_RS17655 0.64 -2.1
3,925,650 - QEN71_RS17655 0.64 -0.4
3,925,650 - QEN71_RS17655 0.64 -2.0
3,925,650 - QEN71_RS17655 0.64 -1.9
3,925,650 - QEN71_RS17655 0.64 -3.5
3,925,650 - QEN71_RS17655 0.64 -1.2
3,925,650 - QEN71_RS17655 0.64 -1.2
3,925,650 - QEN71_RS17655 0.64 -2.1
3,925,653 + QEN71_RS17655 0.65 -3.5
3,925,653 + QEN71_RS17655 0.65 -0.6
3,925,654 - QEN71_RS17655 0.65 -2.2
3,925,654 - QEN71_RS17655 0.65 -2.6
3,925,734 + QEN71_RS17655 0.75 -1.1
3,926,914 + -0.4
3,926,914 + +0.3
3,926,915 - -1.9

Or see this region's nucleotide sequence