Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06978 and MPMX19_06979 are separated by 118 nucleotides MPMX19_06979 and MPMX19_06980 are separated by 7 nucleotides MPMX19_06980 and MPMX19_06981 are separated by 19 nucleotides
MPMX19_06978: MPMX19_06978 - Alpha-keto acid-binding periplasmic protein TakP, at 258,544 to 259,629
_06978
MPMX19_06979: MPMX19_06979 - hypothetical protein, at 259,748 to 260,395
_06979
MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355
_06980
MPMX19_06981: MPMX19_06981 - hypothetical protein, at 262,375 to 263,358
_06981
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.489 kb on + strand, within MPMX19_06978 at 259.489 kb on + strand, within MPMX19_06978 at 259.490 kb on - strand, within MPMX19_06978 at 259.490 kb on - strand, within MPMX19_06978 at 259.531 kb on + strand at 259.532 kb on - strand at 259.588 kb on + strand at 259.588 kb on + strand at 259.588 kb on + strand at 259.589 kb on - strand at 259.589 kb on - strand at 259.594 kb on + strand at 259.594 kb on + strand at 259.595 kb on - strand at 259.776 kb on + strand at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.393 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.722 kb on - strand, within MPMX19_06980 at 260.722 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.970 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.132 kb on + strand, within MPMX19_06980 at 261.132 kb on + strand, within MPMX19_06980 at 261.133 kb on - strand, within MPMX19_06980 at 261.133 kb on - strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.321 kb on + strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.516 kb on + strand, within MPMX19_06980 at 261.517 kb on - strand, within MPMX19_06980 at 261.517 kb on - strand, within MPMX19_06980 at 261.754 kb on - strand, within MPMX19_06980 at 261.754 kb on - strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.825 kb on + strand, within MPMX19_06980 at 261.826 kb on - strand, within MPMX19_06980 at 262.117 kb on - strand, within MPMX19_06980 at 262.117 kb on - strand, within MPMX19_06980 at 262.170 kb on + strand at 262.170 kb on + strand at 262.171 kb on - strand at 262.171 kb on - strand at 262.251 kb on + strand at 262.251 kb on + strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.252 kb on - strand at 262.391 kb on + strand at 262.426 kb on + strand at 262.426 kb on + strand at 262.426 kb on + strand at 262.427 kb on - strand at 262.427 kb on - strand at 262.427 kb on - strand at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.699 kb on + strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981 at 262.700 kb on - strand, within MPMX19_06981
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 259,489 + MPMX19_06978 0.87 -0.9 259,489 + MPMX19_06978 0.87 -1.9 259,490 - MPMX19_06978 0.87 +0.1 259,490 - MPMX19_06978 0.87 -1.7 259,531 + -1.0 259,532 - -0.5 259,588 + -0.7 259,588 + -0.1 259,588 + -0.8 259,589 - +0.5 259,589 - +1.3 259,594 + +0.3 259,594 + -1.4 259,595 - -0.3 259,776 + -0.3 260,135 + MPMX19_06979 0.60 -0.7 260,135 + MPMX19_06979 0.60 +0.9 260,135 + MPMX19_06979 0.60 +1.7 260,135 + MPMX19_06979 0.60 +0.8 260,136 - MPMX19_06979 0.60 -1.0 260,136 - MPMX19_06979 0.60 +1.1 260,136 - MPMX19_06979 0.60 -0.5 260,393 + +0.9 260,493 + -0.1 260,493 + -0.8 260,493 + -0.5 260,493 + +1.7 260,493 + +0.5 260,494 - +0.1 260,494 - -1.3 260,494 - -0.5 260,494 - +0.7 260,494 - +1.5 260,494 - +0.3 260,494 - -0.1 260,494 - -0.8 260,494 - -0.8 260,721 + MPMX19_06980 0.16 -0.9 260,721 + MPMX19_06980 0.16 +0.4 260,721 + MPMX19_06980 0.16 -1.7 260,721 + MPMX19_06980 0.16 -0.8 260,722 - MPMX19_06980 0.16 +0.8 260,722 - MPMX19_06980 0.16 +0.8 260,863 - MPMX19_06980 0.24 +0.4 260,863 - MPMX19_06980 0.24 -1.5 260,863 - MPMX19_06980 0.24 -0.5 260,863 - MPMX19_06980 0.24 -1.7 260,863 - MPMX19_06980 0.24 -0.2 260,970 + MPMX19_06980 0.29 -1.7 261,090 + MPMX19_06980 0.35 -0.6 261,090 + MPMX19_06980 0.35 -0.8 261,090 + MPMX19_06980 0.35 -0.5 261,090 + MPMX19_06980 0.35 +0.0 261,090 + MPMX19_06980 0.35 +0.1 261,090 + MPMX19_06980 0.35 -1.2 261,090 + MPMX19_06980 0.35 -0.9 261,090 + MPMX19_06980 0.35 +0.3 261,090 + MPMX19_06980 0.35 +0.5 261,090 + MPMX19_06980 0.35 +0.5 261,090 + MPMX19_06980 0.35 +0.0 261,090 + MPMX19_06980 0.35 +0.3 261,090 + MPMX19_06980 0.35 -0.8 261,090 + MPMX19_06980 0.35 +0.6 261,091 - MPMX19_06980 0.35 -1.0 261,091 - MPMX19_06980 0.35 -0.9 261,091 - MPMX19_06980 0.35 -0.7 261,091 - MPMX19_06980 0.35 +2.5 261,091 - MPMX19_06980 0.35 -1.2 261,091 - MPMX19_06980 0.35 -1.7 261,091 - MPMX19_06980 0.35 +1.0 261,091 - MPMX19_06980 0.35 -1.5 261,091 - MPMX19_06980 0.35 -0.9 261,091 - MPMX19_06980 0.35 -0.1 261,091 - MPMX19_06980 0.35 -1.7 261,091 - MPMX19_06980 0.35 -1.1 261,091 - MPMX19_06980 0.35 -1.7 261,091 - MPMX19_06980 0.35 +0.1 261,132 + MPMX19_06980 0.37 +0.3 261,132 + MPMX19_06980 0.37 -0.3 261,133 - MPMX19_06980 0.37 -1.1 261,133 - MPMX19_06980 0.37 -1.1 261,141 + MPMX19_06980 0.38 -1.2 261,141 + MPMX19_06980 0.38 -0.3 261,141 + MPMX19_06980 0.38 +1.4 261,141 + MPMX19_06980 0.38 -0.0 261,141 + MPMX19_06980 0.38 -0.2 261,141 + MPMX19_06980 0.38 +0.1 261,141 + MPMX19_06980 0.38 -0.9 261,142 - MPMX19_06980 0.38 -0.1 261,142 - MPMX19_06980 0.38 -0.1 261,142 - MPMX19_06980 0.38 -0.8 261,142 - MPMX19_06980 0.38 -2.4 261,142 - MPMX19_06980 0.38 +0.3 261,142 - MPMX19_06980 0.38 -1.8 261,321 + MPMX19_06980 0.47 -0.4 261,322 - MPMX19_06980 0.47 -0.6 261,322 - MPMX19_06980 0.47 -1.9 261,322 - MPMX19_06980 0.47 +0.1 261,516 + MPMX19_06980 0.57 +0.5 261,516 + MPMX19_06980 0.57 +0.7 261,516 + MPMX19_06980 0.57 +2.7 261,516 + MPMX19_06980 0.57 +0.9 261,517 - MPMX19_06980 0.57 +1.2 261,517 - MPMX19_06980 0.57 -1.3 261,754 - MPMX19_06980 0.69 -2.1 261,754 - MPMX19_06980 0.69 -0.6 261,825 + MPMX19_06980 0.73 -0.1 261,825 + MPMX19_06980 0.73 +2.4 261,825 + MPMX19_06980 0.73 +1.0 261,825 + MPMX19_06980 0.73 -0.5 261,826 - MPMX19_06980 0.73 -0.2 262,117 - MPMX19_06980 0.88 +1.5 262,117 - MPMX19_06980 0.88 -3.0 262,170 + +0.5 262,170 + -0.1 262,171 - +0.2 262,171 - -0.6 262,251 + -0.4 262,251 + -0.1 262,252 - +0.5 262,252 - -0.4 262,252 - +0.2 262,252 - +0.7 262,391 + +0.4 262,426 + +0.9 262,426 + -0.9 262,426 + -0.8 262,427 - -0.1 262,427 - -0.4 262,427 - -0.3 262,699 + MPMX19_06981 0.33 +0.5 262,699 + MPMX19_06981 0.33 -0.2 262,699 + MPMX19_06981 0.33 -0.5 262,699 + MPMX19_06981 0.33 -0.1 262,699 + MPMX19_06981 0.33 +0.8 262,699 + MPMX19_06981 0.33 +0.7 262,700 - MPMX19_06981 0.33 +0.1 262,700 - MPMX19_06981 0.33 -0.2 262,700 - MPMX19_06981 0.33 +0.7 262,700 - MPMX19_06981 0.33 -1.7 262,700 - MPMX19_06981 0.33 +1.2 262,700 - MPMX19_06981 0.33 +0.1 262,700 - MPMX19_06981 0.33 +0.2
Or see this region's nucleotide sequence