Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06877

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06876 and MPMX19_06877 overlap by 4 nucleotidesMPMX19_06877 and MPMX19_06878 are separated by 8 nucleotides MPMX19_06876: MPMX19_06876 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 147,395 to 148,471 _06876 MPMX19_06877: MPMX19_06877 - hypothetical protein, at 148,468 to 149,637 _06877 MPMX19_06878: MPMX19_06878 - Putative amino-acid ABC transporter-binding protein YhdW, at 149,646 to 150,716 _06878 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1at 147.495 kb on + strandat 147.496 kb on - strandat 147.496 kb on - strandat 147.703 kb on - strand, within MPMX19_06876at 147.703 kb on - strand, within MPMX19_06876at 147.753 kb on + strand, within MPMX19_06876at 147.753 kb on + strand, within MPMX19_06876at 148.104 kb on - strand, within MPMX19_06876at 148.104 kb on - strand, within MPMX19_06876at 148.104 kb on - strand, within MPMX19_06876at 148.104 kb on - strand, within MPMX19_06876at 148.204 kb on - strand, within MPMX19_06876at 148.204 kb on - strand, within MPMX19_06876at 148.204 kb on - strand, within MPMX19_06876at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.258 kb on + strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.259 kb on - strand, within MPMX19_06877at 149.666 kb on - strandat 149.785 kb on + strand, within MPMX19_06878at 150.026 kb on - strand, within MPMX19_06878at 150.026 kb on - strand, within MPMX19_06878at 150.026 kb on - strand, within MPMX19_06878at 150.026 kb on - strand, within MPMX19_06878at 150.296 kb on - strand, within MPMX19_06878at 150.296 kb on - strand, within MPMX19_06878at 150.296 kb on - strand, within MPMX19_06878at 150.296 kb on - strand, within MPMX19_06878at 150.296 kb on - strand, within MPMX19_06878

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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147,495 + +1.2
147,496 - +0.3
147,496 - -0.0
147,703 - MPMX19_06876 0.29 +0.9
147,703 - MPMX19_06876 0.29 -0.8
147,753 + MPMX19_06876 0.33 -1.7
147,753 + MPMX19_06876 0.33 +0.5
148,104 - MPMX19_06876 0.66 -0.5
148,104 - MPMX19_06876 0.66 -0.1
148,104 - MPMX19_06876 0.66 +0.3
148,104 - MPMX19_06876 0.66 -1.6
148,204 - MPMX19_06876 0.75 -0.3
148,204 - MPMX19_06876 0.75 +0.8
148,204 - MPMX19_06876 0.75 -0.7
149,258 + MPMX19_06877 0.68 +0.2
149,258 + MPMX19_06877 0.68 -1.9
149,258 + MPMX19_06877 0.68 +0.8
149,258 + MPMX19_06877 0.68 -1.2
149,258 + MPMX19_06877 0.68 -0.6
149,258 + MPMX19_06877 0.68 +0.0
149,258 + MPMX19_06877 0.68 -1.5
149,258 + MPMX19_06877 0.68 -0.6
149,258 + MPMX19_06877 0.68 -2.7
149,259 - MPMX19_06877 0.68 -1.3
149,259 - MPMX19_06877 0.68 -0.8
149,259 - MPMX19_06877 0.68 +0.5
149,259 - MPMX19_06877 0.68 +0.8
149,259 - MPMX19_06877 0.68 -1.8
149,259 - MPMX19_06877 0.68 -1.2
149,259 - MPMX19_06877 0.68 -0.7
149,666 - -0.2
149,785 + MPMX19_06878 0.13 +0.5
150,026 - MPMX19_06878 0.35 -0.4
150,026 - MPMX19_06878 0.35 +1.2
150,026 - MPMX19_06878 0.35 +0.3
150,026 - MPMX19_06878 0.35 -0.3
150,296 - MPMX19_06878 0.61 +1.3
150,296 - MPMX19_06878 0.61 -1.0
150,296 - MPMX19_06878 0.61 -0.1
150,296 - MPMX19_06878 0.61 +0.3
150,296 - MPMX19_06878 0.61 -0.1

Or see this region's nucleotide sequence