Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06526 and MPMX19_06527 overlap by 4 nucleotides MPMX19_06527 and MPMX19_06528 overlap by 4 nucleotides MPMX19_06528 and MPMX19_06529 are separated by 37 nucleotides MPMX19_06529 and MPMX19_06530 overlap by 4 nucleotides
MPMX19_06526: MPMX19_06526 - Putative aliphatic sulfonates transport permease protein SsuC, at 313,538 to 314,431
_06526
MPMX19_06527: MPMX19_06527 - Bicarbonate transport ATP-binding protein CmpD, at 314,428 to 315,225
_06527
MPMX19_06528: MPMX19_06528 - hypothetical protein, at 315,222 to 316,268
_06528
MPMX19_06529: MPMX19_06529 - Choline trimethylamine-lyase activating enzyme, at 316,306 to 316,647
_06529
MPMX19_06530: MPMX19_06530 - hypothetical protein, at 316,644 to 318,299
_06530
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.338 kb on + strand, within MPMX19_06526 at 314.504 kb on + strand at 314.504 kb on + strand at 314.505 kb on - strand at 314.505 kb on - strand at 314.964 kb on - strand, within MPMX19_06527 at 314.964 kb on - strand, within MPMX19_06527 at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.183 kb on - strand at 315.776 kb on - strand, within MPMX19_06528 at 315.776 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.789 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.791 kb on - strand, within MPMX19_06528 at 315.901 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 315.910 kb on + strand, within MPMX19_06528 at 316.193 kb on + strand at 316.194 kb on - strand at 316.194 kb on - strand at 316.194 kb on - strand at 316.358 kb on + strand, within MPMX19_06529 at 316.359 kb on - strand, within MPMX19_06529 at 316.840 kb on + strand, within MPMX19_06530 at 316.841 kb on - strand, within MPMX19_06530 at 316.841 kb on - strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.987 kb on + strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 316.988 kb on - strand, within MPMX19_06530 at 317.000 kb on - strand, within MPMX19_06530
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 314,338 + MPMX19_06526 0.89 -0.8 314,504 + -2.2 314,504 + -1.6 314,505 - -1.5 314,505 - -1.2 314,964 - MPMX19_06527 0.67 -0.3 314,964 - MPMX19_06527 0.67 -0.8 315,183 - +0.7 315,183 - +1.5 315,183 - +0.5 315,183 - -2.3 315,183 - +2.2 315,183 - -0.6 315,183 - +1.0 315,183 - +0.2 315,776 - MPMX19_06528 0.53 +0.2 315,776 - MPMX19_06528 0.53 +0.9 315,789 - MPMX19_06528 0.54 +1.2 315,789 - MPMX19_06528 0.54 +0.1 315,789 - MPMX19_06528 0.54 +0.4 315,789 - MPMX19_06528 0.54 +2.0 315,789 - MPMX19_06528 0.54 -0.8 315,789 - MPMX19_06528 0.54 -0.3 315,789 - MPMX19_06528 0.54 -0.4 315,789 - MPMX19_06528 0.54 +1.0 315,789 - MPMX19_06528 0.54 -2.7 315,789 - MPMX19_06528 0.54 +1.4 315,789 - MPMX19_06528 0.54 +0.1 315,789 - MPMX19_06528 0.54 -0.3 315,789 - MPMX19_06528 0.54 -0.3 315,789 - MPMX19_06528 0.54 +0.1 315,789 - MPMX19_06528 0.54 +2.4 315,789 - MPMX19_06528 0.54 -0.5 315,789 - MPMX19_06528 0.54 +0.1 315,789 - MPMX19_06528 0.54 +1.0 315,789 - MPMX19_06528 0.54 +1.0 315,789 - MPMX19_06528 0.54 +0.3 315,789 - MPMX19_06528 0.54 -0.3 315,789 - MPMX19_06528 0.54 +2.4 315,789 - MPMX19_06528 0.54 +0.1 315,789 - MPMX19_06528 0.54 -0.5 315,789 - MPMX19_06528 0.54 +0.9 315,789 - MPMX19_06528 0.54 +0.3 315,789 - MPMX19_06528 0.54 +1.7 315,789 - MPMX19_06528 0.54 -1.3 315,789 - MPMX19_06528 0.54 +0.3 315,789 - MPMX19_06528 0.54 +0.5 315,789 - MPMX19_06528 0.54 -0.9 315,789 - MPMX19_06528 0.54 +0.3 315,789 - MPMX19_06528 0.54 -0.8 315,791 - MPMX19_06528 0.54 +1.2 315,791 - MPMX19_06528 0.54 +0.5 315,791 - MPMX19_06528 0.54 -0.9 315,791 - MPMX19_06528 0.54 +1.4 315,791 - MPMX19_06528 0.54 -0.4 315,791 - MPMX19_06528 0.54 +0.5 315,791 - MPMX19_06528 0.54 -0.0 315,791 - MPMX19_06528 0.54 +0.2 315,791 - MPMX19_06528 0.54 +0.2 315,791 - MPMX19_06528 0.54 -0.6 315,791 - MPMX19_06528 0.54 +0.3 315,791 - MPMX19_06528 0.54 -2.5 315,901 + MPMX19_06528 0.65 -0.5 315,910 + MPMX19_06528 0.66 +0.6 315,910 + MPMX19_06528 0.66 +0.7 315,910 + MPMX19_06528 0.66 -3.2 315,910 + MPMX19_06528 0.66 -0.4 315,910 + MPMX19_06528 0.66 +0.2 315,910 + MPMX19_06528 0.66 +0.4 315,910 + MPMX19_06528 0.66 -1.1 315,910 + MPMX19_06528 0.66 +1.2 316,193 + -0.0 316,194 - +0.7 316,194 - +0.4 316,194 - -0.4 316,358 + MPMX19_06529 0.15 +1.1 316,359 - MPMX19_06529 0.15 -0.4 316,840 + MPMX19_06530 0.12 -0.3 316,841 - MPMX19_06530 0.12 -1.3 316,841 - MPMX19_06530 0.12 -1.1 316,987 + MPMX19_06530 0.21 -0.2 316,987 + MPMX19_06530 0.21 -1.0 316,987 + MPMX19_06530 0.21 +0.3 316,987 + MPMX19_06530 0.21 +0.1 316,987 + MPMX19_06530 0.21 +1.4 316,987 + MPMX19_06530 0.21 -1.9 316,987 + MPMX19_06530 0.21 -0.3 316,987 + MPMX19_06530 0.21 +1.0 316,987 + MPMX19_06530 0.21 +0.5 316,988 - MPMX19_06530 0.21 -0.4 316,988 - MPMX19_06530 0.21 +0.3 316,988 - MPMX19_06530 0.21 -0.2 316,988 - MPMX19_06530 0.21 -0.5 316,988 - MPMX19_06530 0.21 -0.2 316,988 - MPMX19_06530 0.21 -0.2 316,988 - MPMX19_06530 0.21 -0.2 317,000 - MPMX19_06530 0.21 +0.8
Or see this region's nucleotide sequence