Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06394 and MPMX19_06395 are separated by 68 nucleotides MPMX19_06395 and MPMX19_06396 are separated by 31 nucleotides MPMX19_06396 and MPMX19_06397 are separated by 16 nucleotides MPMX19_06397 and MPMX19_06398 are separated by 75 nucleotides
MPMX19_06394: MPMX19_06394 - hypothetical protein, at 159,901 to 160,572
_06394
MPMX19_06395: MPMX19_06395 - Inner membrane protein YqaA, at 160,641 to 161,066
_06395
MPMX19_06396: MPMX19_06396 - hypothetical protein, at 161,098 to 161,571
_06396
MPMX19_06397: MPMX19_06397 - hypothetical protein, at 161,588 to 162,355
_06397
MPMX19_06398: MPMX19_06398 - Silver exporting P-type ATPase, at 162,431 to 164,830
_06398
Position (kb) 161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.187 kb on + strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.188 kb on - strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.336 kb on + strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.337 kb on - strand, within MPMX19_06394 at 160.338 kb on + strand, within MPMX19_06394 at 160.338 kb on + strand, within MPMX19_06394 at 160.338 kb on + strand, within MPMX19_06394 at 160.338 kb on + strand, within MPMX19_06394 at 160.339 kb on - strand, within MPMX19_06394 at 160.339 kb on - strand, within MPMX19_06394 at 160.339 kb on - strand, within MPMX19_06394 at 160.417 kb on + strand, within MPMX19_06394 at 160.417 kb on + strand, within MPMX19_06394 at 160.417 kb on + strand, within MPMX19_06394 at 160.417 kb on + strand, within MPMX19_06394 at 160.418 kb on - strand, within MPMX19_06394 at 160.418 kb on - strand, within MPMX19_06394 at 160.418 kb on - strand, within MPMX19_06394 at 160.546 kb on + strand at 160.546 kb on + strand at 160.546 kb on + strand at 160.546 kb on + strand at 160.547 kb on - strand at 160.702 kb on + strand, within MPMX19_06395 at 160.703 kb on - strand, within MPMX19_06395 at 160.830 kb on + strand, within MPMX19_06395 at 160.830 kb on + strand, within MPMX19_06395 at 160.831 kb on - strand, within MPMX19_06395 at 160.831 kb on - strand, within MPMX19_06395 at 160.831 kb on - strand, within MPMX19_06395 at 160.847 kb on + strand, within MPMX19_06395 at 160.902 kb on + strand, within MPMX19_06395 at 161.040 kb on + strand at 161.041 kb on - strand at 161.041 kb on - strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.064 kb on + strand at 161.065 kb on - strand at 161.065 kb on - strand at 161.065 kb on - strand at 161.065 kb on - strand at 161.065 kb on - strand at 161.203 kb on + strand, within MPMX19_06396 at 161.203 kb on + strand, within MPMX19_06396 at 161.203 kb on + strand, within MPMX19_06396 at 161.203 kb on + strand, within MPMX19_06396 at 161.203 kb on + strand, within MPMX19_06396 at 161.203 kb on + strand, within MPMX19_06396 at 161.204 kb on - strand, within MPMX19_06396 at 161.204 kb on - strand, within MPMX19_06396 at 161.204 kb on - strand, within MPMX19_06396 at 161.204 kb on - strand, within MPMX19_06396 at 161.403 kb on + strand, within MPMX19_06396 at 161.404 kb on - strand, within MPMX19_06396 at 161.404 kb on - strand, within MPMX19_06396 at 161.455 kb on + strand, within MPMX19_06396 at 161.455 kb on + strand, within MPMX19_06396 at 161.455 kb on + strand, within MPMX19_06396 at 161.455 kb on + strand, within MPMX19_06396 at 161.455 kb on + strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.456 kb on - strand, within MPMX19_06396 at 161.729 kb on + strand, within MPMX19_06397 at 161.730 kb on - strand, within MPMX19_06397 at 161.810 kb on + strand, within MPMX19_06397 at 161.825 kb on + strand, within MPMX19_06397 at 161.825 kb on + strand, within MPMX19_06397 at 161.825 kb on + strand, within MPMX19_06397 at 161.907 kb on - strand, within MPMX19_06397 at 161.907 kb on - strand, within MPMX19_06397 at 161.907 kb on - strand, within MPMX19_06397 at 161.996 kb on + strand, within MPMX19_06397 at 161.996 kb on + strand, within MPMX19_06397 at 161.996 kb on + strand, within MPMX19_06397 at 161.996 kb on + strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 161.997 kb on - strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.089 kb on + strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.090 kb on - strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.101 kb on + strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.102 kb on - strand, within MPMX19_06397 at 162.290 kb on + strand at 162.290 kb on + strand at 162.290 kb on + strand at 162.291 kb on - strand at 162.291 kb on - strand at 162.291 kb on - strand at 162.291 kb on - strand at 162.291 kb on - strand at 162.291 kb on - strand at 162.302 kb on + strand at 162.303 kb on - strand at 162.303 kb on - strand at 162.303 kb on - strand at 162.303 kb on - strand at 162.333 kb on + strand at 162.333 kb on + strand at 162.334 kb on - strand at 162.343 kb on + strand at 162.343 kb on + strand at 162.343 kb on + strand at 162.344 kb on - strand at 162.344 kb on - strand at 162.344 kb on - strand at 162.344 kb on - strand at 162.344 kb on - strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.369 kb on + strand at 162.370 kb on - strand at 162.370 kb on - strand at 162.370 kb on - strand at 162.370 kb on - strand at 162.370 kb on - strand at 162.370 kb on - strand at 162.386 kb on + strand at 162.387 kb on - strand at 162.387 kb on - strand at 162.432 kb on + strand at 162.432 kb on + strand at 162.433 kb on - strand at 162.433 kb on - strand at 162.433 kb on - strand at 162.433 kb on - strand at 162.433 kb on - strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand at 162.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 160,187 + MPMX19_06394 0.43 -0.5 160,187 + MPMX19_06394 0.43 -0.1 160,187 + MPMX19_06394 0.43 +0.4 160,187 + MPMX19_06394 0.43 -0.8 160,187 + MPMX19_06394 0.43 -1.6 160,187 + MPMX19_06394 0.43 -0.6 160,187 + MPMX19_06394 0.43 +0.4 160,187 + MPMX19_06394 0.43 -0.1 160,188 - MPMX19_06394 0.43 +0.4 160,188 - MPMX19_06394 0.43 +0.1 160,188 - MPMX19_06394 0.43 +0.5 160,188 - MPMX19_06394 0.43 +0.1 160,188 - MPMX19_06394 0.43 -0.4 160,188 - MPMX19_06394 0.43 -0.9 160,336 + MPMX19_06394 0.65 -0.3 160,336 + MPMX19_06394 0.65 -0.2 160,336 + MPMX19_06394 0.65 -2.0 160,336 + MPMX19_06394 0.65 -0.2 160,336 + MPMX19_06394 0.65 -0.6 160,336 + MPMX19_06394 0.65 +0.7 160,336 + MPMX19_06394 0.65 +0.2 160,336 + MPMX19_06394 0.65 -1.6 160,336 + MPMX19_06394 0.65 -0.5 160,337 - MPMX19_06394 0.65 +0.9 160,337 - MPMX19_06394 0.65 -0.4 160,337 - MPMX19_06394 0.65 -0.7 160,337 - MPMX19_06394 0.65 +0.7 160,337 - MPMX19_06394 0.65 +1.1 160,337 - MPMX19_06394 0.65 +0.5 160,337 - MPMX19_06394 0.65 -0.9 160,337 - MPMX19_06394 0.65 +0.1 160,337 - MPMX19_06394 0.65 -0.4 160,337 - MPMX19_06394 0.65 -1.0 160,338 + MPMX19_06394 0.65 -0.0 160,338 + MPMX19_06394 0.65 -0.0 160,338 + MPMX19_06394 0.65 -1.5 160,338 + MPMX19_06394 0.65 -1.1 160,339 - MPMX19_06394 0.65 -0.8 160,339 - MPMX19_06394 0.65 +1.4 160,339 - MPMX19_06394 0.65 -0.2 160,417 + MPMX19_06394 0.77 -0.3 160,417 + MPMX19_06394 0.77 -0.7 160,417 + MPMX19_06394 0.77 -0.5 160,417 + MPMX19_06394 0.77 -0.6 160,418 - MPMX19_06394 0.77 +1.3 160,418 - MPMX19_06394 0.77 -1.3 160,418 - MPMX19_06394 0.77 -0.3 160,546 + +1.5 160,546 + -0.2 160,546 + +0.3 160,546 + +0.1 160,547 - -1.6 160,702 + MPMX19_06395 0.14 +0.5 160,703 - MPMX19_06395 0.15 -0.8 160,830 + MPMX19_06395 0.44 +0.1 160,830 + MPMX19_06395 0.44 +0.7 160,831 - MPMX19_06395 0.45 +0.1 160,831 - MPMX19_06395 0.45 +1.0 160,831 - MPMX19_06395 0.45 -1.3 160,847 + MPMX19_06395 0.48 +0.2 160,902 + MPMX19_06395 0.61 -1.0 161,040 + -0.0 161,041 - +0.1 161,041 - -0.6 161,064 + -2.0 161,064 + +0.5 161,064 + -0.3 161,064 + -0.8 161,064 + -0.3 161,064 + +0.1 161,064 + +0.1 161,064 + -0.5 161,065 - -0.3 161,065 - -0.4 161,065 - -0.7 161,065 - +0.4 161,065 - -0.6 161,203 + MPMX19_06396 0.22 +0.8 161,203 + MPMX19_06396 0.22 +1.8 161,203 + MPMX19_06396 0.22 -0.8 161,203 + MPMX19_06396 0.22 -0.9 161,203 + MPMX19_06396 0.22 +0.5 161,203 + MPMX19_06396 0.22 -1.3 161,204 - MPMX19_06396 0.22 -0.9 161,204 - MPMX19_06396 0.22 -0.1 161,204 - MPMX19_06396 0.22 +1.3 161,204 - MPMX19_06396 0.22 +1.2 161,403 + MPMX19_06396 0.64 -1.1 161,404 - MPMX19_06396 0.65 +0.0 161,404 - MPMX19_06396 0.65 -1.5 161,455 + MPMX19_06396 0.75 -0.0 161,455 + MPMX19_06396 0.75 +0.4 161,455 + MPMX19_06396 0.75 -1.5 161,455 + MPMX19_06396 0.75 +1.0 161,455 + MPMX19_06396 0.75 -0.4 161,456 - MPMX19_06396 0.76 -0.5 161,456 - MPMX19_06396 0.76 +1.4 161,456 - MPMX19_06396 0.76 +0.9 161,456 - MPMX19_06396 0.76 -1.3 161,456 - MPMX19_06396 0.76 -0.1 161,456 - MPMX19_06396 0.76 +0.1 161,456 - MPMX19_06396 0.76 +0.8 161,456 - MPMX19_06396 0.76 +0.7 161,456 - MPMX19_06396 0.76 -0.1 161,456 - MPMX19_06396 0.76 -2.4 161,456 - MPMX19_06396 0.76 +1.0 161,456 - MPMX19_06396 0.76 -1.6 161,729 + MPMX19_06397 0.18 +0.2 161,730 - MPMX19_06397 0.18 +1.3 161,810 + MPMX19_06397 0.29 +0.1 161,825 + MPMX19_06397 0.31 -0.2 161,825 + MPMX19_06397 0.31 +0.0 161,825 + MPMX19_06397 0.31 +0.1 161,907 - MPMX19_06397 0.42 +0.9 161,907 - MPMX19_06397 0.42 +0.7 161,907 - MPMX19_06397 0.42 -0.8 161,996 + MPMX19_06397 0.53 +0.1 161,996 + MPMX19_06397 0.53 -0.3 161,996 + MPMX19_06397 0.53 +0.2 161,996 + MPMX19_06397 0.53 -0.2 161,997 - MPMX19_06397 0.53 -0.5 161,997 - MPMX19_06397 0.53 +0.3 161,997 - MPMX19_06397 0.53 +0.8 161,997 - MPMX19_06397 0.53 -0.7 161,997 - MPMX19_06397 0.53 -1.2 161,997 - MPMX19_06397 0.53 +1.7 161,997 - MPMX19_06397 0.53 +0.0 161,997 - MPMX19_06397 0.53 -0.5 162,089 + MPMX19_06397 0.65 -1.0 162,089 + MPMX19_06397 0.65 -2.5 162,089 + MPMX19_06397 0.65 -1.2 162,089 + MPMX19_06397 0.65 +0.4 162,089 + MPMX19_06397 0.65 -0.6 162,089 + MPMX19_06397 0.65 +1.3 162,089 + MPMX19_06397 0.65 -0.2 162,089 + MPMX19_06397 0.65 -1.8 162,089 + MPMX19_06397 0.65 -1.0 162,090 - MPMX19_06397 0.65 +0.1 162,090 - MPMX19_06397 0.65 +0.4 162,090 - MPMX19_06397 0.65 +0.3 162,090 - MPMX19_06397 0.65 +0.1 162,090 - MPMX19_06397 0.65 -0.8 162,090 - MPMX19_06397 0.65 +0.1 162,090 - MPMX19_06397 0.65 -0.9 162,090 - MPMX19_06397 0.65 -0.6 162,090 - MPMX19_06397 0.65 +0.3 162,090 - MPMX19_06397 0.65 +0.2 162,090 - MPMX19_06397 0.65 -0.8 162,090 - MPMX19_06397 0.65 -0.5 162,101 + MPMX19_06397 0.67 -1.3 162,101 + MPMX19_06397 0.67 +2.0 162,101 + MPMX19_06397 0.67 -0.8 162,101 + MPMX19_06397 0.67 -2.4 162,101 + MPMX19_06397 0.67 +0.7 162,101 + MPMX19_06397 0.67 +1.0 162,101 + MPMX19_06397 0.67 -1.5 162,102 - MPMX19_06397 0.67 +0.0 162,102 - MPMX19_06397 0.67 -1.3 162,102 - MPMX19_06397 0.67 -1.1 162,102 - MPMX19_06397 0.67 +0.1 162,102 - MPMX19_06397 0.67 +0.7 162,102 - MPMX19_06397 0.67 -1.0 162,102 - MPMX19_06397 0.67 +0.7 162,290 + -1.0 162,290 + -0.8 162,290 + -2.9 162,291 - -1.1 162,291 - +0.9 162,291 - +0.8 162,291 - -0.5 162,291 - -1.6 162,291 - -0.9 162,302 + -0.1 162,303 - -0.5 162,303 - +1.3 162,303 - +0.5 162,303 - -2.1 162,333 + +0.1 162,333 + -0.1 162,334 - -0.9 162,343 + +0.4 162,343 + -0.2 162,343 + +0.0 162,344 - -0.1 162,344 - -0.8 162,344 - -1.9 162,344 - -0.0 162,344 - +0.1 162,369 + -0.1 162,369 + -1.0 162,369 + +0.8 162,369 + -0.6 162,369 + -0.8 162,369 + -0.9 162,369 + -1.9 162,369 + -1.1 162,369 + +0.9 162,369 + -0.0 162,370 - +1.3 162,370 - -0.0 162,370 - -0.8 162,370 - -1.8 162,370 - +0.5 162,370 - +2.3 162,386 + +1.7 162,387 - +0.7 162,387 - -0.9 162,432 + -0.3 162,432 + +0.6 162,433 - +0.2 162,433 - -0.3 162,433 - -0.8 162,433 - +0.1 162,433 - -0.4 162,540 + -2.0 162,540 + +0.4 162,540 + -1.1 162,540 + -2.0 162,540 + -0.3 162,540 + -1.1 162,540 + +0.2 162,540 + -1.5 162,540 + +1.0 162,540 + +0.7 162,541 - +0.1 162,541 - -1.2 162,541 - -1.5 162,541 - +0.2 162,541 - +0.4 162,541 - -0.4 162,541 - +1.1 162,541 - -0.1
Or see this region's nucleotide sequence