Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05954 and MPMX19_05955 are separated by 207 nucleotides MPMX19_05955 and MPMX19_05956 are separated by 107 nucleotides MPMX19_05956 and MPMX19_05957 are separated by 147 nucleotides
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
MPMX19_05955: MPMX19_05955 - Riboflavin transporter, at 103,582 to 104,520
_05955
MPMX19_05956: MPMX19_05956 - hypothetical protein, at 104,628 to 105,179
_05956
MPMX19_05957: MPMX19_05957 - hypothetical protein, at 105,327 to 105,938
_05957
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 102.720 kb on - strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.393 kb on + strand at 103.393 kb on + strand at 103.394 kb on - strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.538 kb on + strand at 103.538 kb on + strand at 103.539 kb on - strand at 103.539 kb on - strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.796 kb on + strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 104.265 kb on + strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955 at 104.534 kb on + strand at 104.534 kb on + strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.535 kb on - strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.607 kb on + strand at 104.608 kb on - strand at 104.728 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.866 kb on + strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.867 kb on - strand, within MPMX19_05956 at 104.868 kb on - strand, within MPMX19_05956 at 105.232 kb on + strand at 105.232 kb on + strand at 105.233 kb on - strand at 105.233 kb on - strand at 105.244 kb on - strand at 105.352 kb on + strand at 105.353 kb on - strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.355 kb on + strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.356 kb on - strand at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.424 kb on + strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.425 kb on - strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.460 kb on + strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957 at 105.461 kb on - strand, within MPMX19_05957
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 102,720 - MPMX19_05954 0.76 -0.7 102,878 + MPMX19_05954 0.82 -0.6 102,878 + MPMX19_05954 0.82 -0.3 102,879 - MPMX19_05954 0.82 -0.3 102,879 - MPMX19_05954 0.82 -1.4 102,879 - MPMX19_05954 0.82 +0.3 103,117 + +1.3 103,117 + -1.2 103,117 + -1.2 103,117 + +0.3 103,117 + -0.4 103,117 + -0.5 103,117 + -0.1 103,118 - -0.8 103,118 - -0.5 103,118 - -0.2 103,118 - -0.6 103,393 + +0.3 103,393 + -1.0 103,394 - -0.9 103,455 + -0.5 103,455 + -0.2 103,455 + -0.4 103,455 + +0.6 103,455 + -0.5 103,455 + -0.2 103,455 + -1.1 103,455 + -1.8 103,455 + +0.0 103,455 + +0.0 103,455 + -1.4 103,455 + -1.3 103,455 + +0.6 103,455 + -0.0 103,455 + -0.5 103,455 + +0.3 103,455 + -1.7 103,455 + +0.5 103,455 + +0.5 103,455 + +0.3 103,455 + -0.2 103,455 + -0.6 103,456 - -2.1 103,456 - +1.2 103,456 - -2.4 103,456 - +0.3 103,456 - +0.3 103,456 - -1.2 103,456 - +0.0 103,456 - -1.5 103,456 - +0.0 103,456 - +0.5 103,456 - -1.1 103,456 - +0.4 103,456 - -0.4 103,456 - +0.9 103,456 - -0.4 103,456 - +0.2 103,456 - -0.8 103,456 - -0.3 103,456 - +0.4 103,456 - -2.3 103,456 - -2.2 103,456 - -1.4 103,457 + +0.0 103,457 + +1.4 103,457 + -2.0 103,457 + -1.3 103,457 + -1.0 103,457 + +0.6 103,457 + +0.9 103,457 + -0.5 103,458 - -1.6 103,458 - -1.1 103,458 - -0.2 103,458 - -0.1 103,458 - -1.4 103,458 - -0.4 103,458 - +1.5 103,458 - +0.5 103,458 - +0.2 103,458 - -1.5 103,458 - +0.4 103,458 - -1.2 103,509 + -1.3 103,509 + -0.7 103,509 + +1.0 103,509 + +1.0 103,510 - -1.7 103,510 - +0.8 103,510 - -0.7 103,510 - -1.7 103,538 + -1.0 103,538 + +0.9 103,539 - -1.9 103,539 - -0.6 103,652 + +0.2 103,652 + -0.6 103,652 + -2.3 103,652 + -1.7 103,652 + -1.6 103,652 + +0.0 103,652 + +1.6 103,652 + -0.4 103,652 + -0.7 103,652 + -2.2 103,652 + +0.3 103,652 + -0.9 103,652 + +0.5 103,653 - -1.4 103,653 - -1.0 103,653 - -0.4 103,653 - +0.6 103,653 - +0.8 103,653 - -1.2 103,653 - -1.1 103,653 - -1.3 103,653 - -0.3 103,653 - +0.2 103,653 - -1.2 103,653 - -2.6 103,653 - -0.3 103,757 + MPMX19_05955 0.19 +0.8 103,757 + MPMX19_05955 0.19 +0.5 103,757 + MPMX19_05955 0.19 +0.4 103,757 + MPMX19_05955 0.19 -1.6 103,757 + MPMX19_05955 0.19 -0.6 103,758 - MPMX19_05955 0.19 +0.8 103,758 - MPMX19_05955 0.19 -0.3 103,758 - MPMX19_05955 0.19 -0.5 103,758 - MPMX19_05955 0.19 +0.0 103,796 + MPMX19_05955 0.23 -0.1 103,797 - MPMX19_05955 0.23 -3.2 103,797 - MPMX19_05955 0.23 +0.0 103,934 + MPMX19_05955 0.37 -0.6 103,934 + MPMX19_05955 0.37 -1.4 103,934 + MPMX19_05955 0.37 +0.1 103,934 + MPMX19_05955 0.37 -0.5 103,934 + MPMX19_05955 0.37 -0.7 103,934 + MPMX19_05955 0.37 +0.1 103,934 + MPMX19_05955 0.37 -1.3 103,934 + MPMX19_05955 0.37 +1.0 103,934 + MPMX19_05955 0.37 -0.7 103,934 + MPMX19_05955 0.37 +2.2 103,935 - MPMX19_05955 0.38 +1.2 103,935 - MPMX19_05955 0.38 -0.8 103,935 - MPMX19_05955 0.38 -1.6 103,935 - MPMX19_05955 0.38 -1.7 103,935 - MPMX19_05955 0.38 -1.7 103,935 - MPMX19_05955 0.38 -1.3 103,935 - MPMX19_05955 0.38 +0.0 104,265 + MPMX19_05955 0.73 +2.0 104,266 - MPMX19_05955 0.73 -0.3 104,266 - MPMX19_05955 0.73 +0.0 104,280 - MPMX19_05955 0.74 -0.8 104,280 - MPMX19_05955 0.74 +0.1 104,534 + -0.1 104,534 + +0.0 104,535 - -0.6 104,535 - +0.5 104,535 - -0.5 104,535 - +0.6 104,535 - +0.4 104,607 + +0.8 104,607 + +0.2 104,607 + -1.1 104,608 - -1.6 104,728 + MPMX19_05956 0.18 -1.0 104,866 + MPMX19_05956 0.43 -0.6 104,866 + MPMX19_05956 0.43 +0.2 104,866 + MPMX19_05956 0.43 +0.8 104,866 + MPMX19_05956 0.43 +1.2 104,866 + MPMX19_05956 0.43 -1.7 104,866 + MPMX19_05956 0.43 +1.7 104,866 + MPMX19_05956 0.43 -1.0 104,866 + MPMX19_05956 0.43 -0.7 104,866 + MPMX19_05956 0.43 -1.1 104,866 + MPMX19_05956 0.43 -0.4 104,866 + MPMX19_05956 0.43 -1.1 104,866 + MPMX19_05956 0.43 -0.4 104,866 + MPMX19_05956 0.43 -0.5 104,866 + MPMX19_05956 0.43 +0.3 104,867 - MPMX19_05956 0.43 -1.0 104,867 - MPMX19_05956 0.43 -2.2 104,867 - MPMX19_05956 0.43 -0.6 104,867 - MPMX19_05956 0.43 -0.1 104,867 - MPMX19_05956 0.43 -0.3 104,867 - MPMX19_05956 0.43 -1.0 104,867 - MPMX19_05956 0.43 -0.8 104,867 - MPMX19_05956 0.43 +0.0 104,867 - MPMX19_05956 0.43 -1.1 104,867 - MPMX19_05956 0.43 +1.2 104,867 - MPMX19_05956 0.43 -0.7 104,867 - MPMX19_05956 0.43 -0.6 104,867 - MPMX19_05956 0.43 +1.0 104,867 - MPMX19_05956 0.43 +0.6 104,868 - MPMX19_05956 0.43 +0.0 105,232 + +0.3 105,232 + +0.2 105,233 - +1.3 105,233 - +0.3 105,244 - -0.1 105,352 + -1.7 105,353 - +0.3 105,355 + -0.1 105,355 + +0.7 105,355 + -0.8 105,355 + -1.3 105,355 + -0.0 105,355 + -1.4 105,355 + -0.3 105,356 - -0.9 105,356 - +1.6 105,356 - -1.3 105,356 - +0.2 105,356 - -1.6 105,356 - -0.6 105,356 - -0.7 105,424 + MPMX19_05957 0.16 -0.1 105,424 + MPMX19_05957 0.16 -0.6 105,424 + MPMX19_05957 0.16 -0.2 105,424 + MPMX19_05957 0.16 -0.6 105,425 - MPMX19_05957 0.16 -0.3 105,425 - MPMX19_05957 0.16 -1.6 105,425 - MPMX19_05957 0.16 +0.3 105,425 - MPMX19_05957 0.16 -1.1 105,425 - MPMX19_05957 0.16 +0.7 105,425 - MPMX19_05957 0.16 +0.5 105,425 - MPMX19_05957 0.16 -0.0 105,460 + MPMX19_05957 0.22 -1.0 105,460 + MPMX19_05957 0.22 -0.7 105,461 - MPMX19_05957 0.22 -0.7 105,461 - MPMX19_05957 0.22 +0.0 105,461 - MPMX19_05957 0.22 -1.1
Or see this region's nucleotide sequence