Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05539

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05538 and MPMX19_05539 are separated by 111 nucleotidesMPMX19_05539 and MPMX19_05540 are separated by 284 nucleotides MPMX19_05538: MPMX19_05538 - hypothetical protein, at 243,051 to 244,229 _05538 MPMX19_05539: MPMX19_05539 - Sensor histidine kinase RcsC, at 244,341 to 246,692 _05539 MPMX19_05540: MPMX19_05540 - hypothetical protein, at 246,977 to 248,209 _05540 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 243.412 kb on + strand, within MPMX19_05538at 243.413 kb on - strand, within MPMX19_05538at 243.544 kb on + strand, within MPMX19_05538at 243.545 kb on - strand, within MPMX19_05538at 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.326 kb on + strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.327 kb on - strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.328 kb on + strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.329 kb on - strandat 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.672 kb on + strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 244.673 kb on - strand, within MPMX19_05539at 245.438 kb on - strand, within MPMX19_05539at 245.438 kb on - strand, within MPMX19_05539at 245.984 kb on + strand, within MPMX19_05539at 245.984 kb on + strand, within MPMX19_05539at 245.985 kb on - strand, within MPMX19_05539at 246.410 kb on + strand, within MPMX19_05539at 246.410 kb on + strand, within MPMX19_05539at 246.410 kb on + strand, within MPMX19_05539at 246.411 kb on - strand, within MPMX19_05539at 246.411 kb on - strand, within MPMX19_05539at 246.411 kb on - strand, within MPMX19_05539at 246.411 kb on - strand, within MPMX19_05539at 246.411 kb on - strand, within MPMX19_05539at 246.577 kb on + strandat 246.577 kb on + strandat 246.577 kb on + strandat 246.577 kb on + strandat 246.578 kb on - strandat 246.578 kb on - strandat 246.578 kb on - strandat 246.578 kb on - strandat 246.723 kb on + strandat 246.723 kb on + strandat 246.724 kb on - strandat 246.738 kb on + strandat 246.738 kb on + strandat 246.738 kb on + strandat 246.739 kb on - strandat 246.739 kb on - strandat 246.739 kb on - strandat 246.739 kb on - strandat 246.777 kb on - strandat 246.777 kb on - strandat 246.829 kb on + strandat 246.839 kb on - strandat 246.997 kb on + strandat 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.175 kb on + strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.176 kb on - strand, within MPMX19_05540at 247.212 kb on + strand, within MPMX19_05540at 247.212 kb on + strand, within MPMX19_05540at 247.213 kb on - strand, within MPMX19_05540at 247.213 kb on - strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.358 kb on + strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.359 kb on - strand, within MPMX19_05540at 247.422 kb on - strand, within MPMX19_05540at 247.422 kb on - strand, within MPMX19_05540at 247.422 kb on - strand, within MPMX19_05540at 247.422 kb on - strand, within MPMX19_05540at 247.478 kb on + strand, within MPMX19_05540at 247.478 kb on + strand, within MPMX19_05540at 247.478 kb on + strand, within MPMX19_05540at 247.479 kb on - strand, within MPMX19_05540at 247.479 kb on - strand, within MPMX19_05540at 247.479 kb on - strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.490 kb on + strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.491 kb on - strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.574 kb on + strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.575 kb on - strand, within MPMX19_05540at 247.679 kb on + strand, within MPMX19_05540at 247.679 kb on + strand, within MPMX19_05540at 247.679 kb on + strand, within MPMX19_05540at 247.679 kb on + strand, within MPMX19_05540at 247.679 kb on + strand, within MPMX19_05540at 247.680 kb on - strand, within MPMX19_05540at 247.680 kb on - strand, within MPMX19_05540at 247.680 kb on - strand, within MPMX19_05540at 247.680 kb on - strand, within MPMX19_05540

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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243,412 + MPMX19_05538 0.31 +1.6
243,413 - MPMX19_05538 0.31 -1.2
243,544 + MPMX19_05538 0.42 -0.5
243,545 - MPMX19_05538 0.42 -2.5
244,326 + +0.1
244,326 + -1.9
244,326 + -0.3
244,326 + -0.2
244,326 + -0.0
244,326 + -2.5
244,326 + -0.9
244,326 + -0.9
244,326 + +0.5
244,326 + -1.0
244,326 + -0.2
244,326 + +0.8
244,326 + +0.6
244,326 + -1.5
244,326 + -1.2
244,326 + -0.7
244,326 + +0.1
244,326 + -1.2
244,326 + +0.1
244,327 - -2.9
244,327 - +0.5
244,327 - +0.1
244,327 - -0.1
244,327 - -0.6
244,327 - +0.4
244,327 - -1.5
244,327 - -0.8
244,327 - +0.3
244,327 - +0.6
244,328 + -1.1
244,328 + -1.1
244,328 + +1.4
244,328 + -0.2
244,328 + -0.4
244,328 + -1.5
244,328 + +1.1
244,328 + +3.6
244,328 + -0.6
244,328 + -0.7
244,328 + +0.4
244,328 + +1.0
244,328 + -0.4
244,328 + -0.1
244,328 + -1.2
244,328 + -2.8
244,328 + +0.8
244,328 + +0.6
244,329 - +1.2
244,329 - -0.4
244,329 - -1.3
244,329 - +0.1
244,329 - -0.5
244,329 - -1.7
244,329 - -0.2
244,329 - -2.1
244,329 - -0.8
244,329 - +0.1
244,329 - +0.2
244,329 - +0.2
244,329 - +1.0
244,329 - -0.9
244,329 - -0.0
244,329 - +1.1
244,329 - -1.1
244,672 + MPMX19_05539 0.14 -1.5
244,672 + MPMX19_05539 0.14 -0.5
244,672 + MPMX19_05539 0.14 +1.0
244,672 + MPMX19_05539 0.14 +1.8
244,672 + MPMX19_05539 0.14 -0.2
244,673 - MPMX19_05539 0.14 -1.2
244,673 - MPMX19_05539 0.14 -0.9
244,673 - MPMX19_05539 0.14 -0.5
244,673 - MPMX19_05539 0.14 +0.5
245,438 - MPMX19_05539 0.47 +1.0
245,438 - MPMX19_05539 0.47 -1.2
245,984 + MPMX19_05539 0.70 +0.2
245,984 + MPMX19_05539 0.70 -0.7
245,985 - MPMX19_05539 0.70 -2.4
246,410 + MPMX19_05539 0.88 +1.1
246,410 + MPMX19_05539 0.88 +1.3
246,410 + MPMX19_05539 0.88 -2.0
246,411 - MPMX19_05539 0.88 -2.4
246,411 - MPMX19_05539 0.88 +0.8
246,411 - MPMX19_05539 0.88 +0.4
246,411 - MPMX19_05539 0.88 +0.9
246,411 - MPMX19_05539 0.88 +0.6
246,577 + -0.6
246,577 + -0.5
246,577 + -1.0
246,577 + -0.0
246,578 - +1.3
246,578 - -0.3
246,578 - +0.0
246,578 - +1.0
246,723 + -1.1
246,723 + -0.7
246,724 - -0.4
246,738 + +0.4
246,738 + +0.0
246,738 + +0.0
246,739 - -0.1
246,739 - -0.1
246,739 - +1.1
246,739 - -0.4
246,777 - +0.2
246,777 - +0.5
246,829 + +0.1
246,839 - -0.5
246,997 + -0.4
247,175 + MPMX19_05540 0.16 -1.1
247,175 + MPMX19_05540 0.16 +0.8
247,175 + MPMX19_05540 0.16 -1.5
247,175 + MPMX19_05540 0.16 -0.2
247,175 + MPMX19_05540 0.16 -0.7
247,175 + MPMX19_05540 0.16 -0.0
247,175 + MPMX19_05540 0.16 -0.0
247,175 + MPMX19_05540 0.16 +0.2
247,175 + MPMX19_05540 0.16 +0.6
247,175 + MPMX19_05540 0.16 +0.2
247,175 + MPMX19_05540 0.16 -0.2
247,175 + MPMX19_05540 0.16 -1.6
247,175 + MPMX19_05540 0.16 +0.6
247,175 + MPMX19_05540 0.16 -1.0
247,175 + MPMX19_05540 0.16 +0.6
247,175 + MPMX19_05540 0.16 +1.5
247,175 + MPMX19_05540 0.16 +1.0
247,175 + MPMX19_05540 0.16 -0.9
247,175 + MPMX19_05540 0.16 -0.7
247,175 + MPMX19_05540 0.16 -1.5
247,176 - MPMX19_05540 0.16 -1.0
247,176 - MPMX19_05540 0.16 +0.4
247,176 - MPMX19_05540 0.16 -1.4
247,176 - MPMX19_05540 0.16 -0.4
247,176 - MPMX19_05540 0.16 +0.0
247,176 - MPMX19_05540 0.16 -1.4
247,176 - MPMX19_05540 0.16 +1.2
247,176 - MPMX19_05540 0.16 +0.5
247,176 - MPMX19_05540 0.16 -0.4
247,176 - MPMX19_05540 0.16 -0.2
247,176 - MPMX19_05540 0.16 -0.4
247,176 - MPMX19_05540 0.16 -0.2
247,176 - MPMX19_05540 0.16 -0.1
247,176 - MPMX19_05540 0.16 -0.8
247,212 + MPMX19_05540 0.19 -0.7
247,212 + MPMX19_05540 0.19 -0.9
247,213 - MPMX19_05540 0.19 -0.7
247,213 - MPMX19_05540 0.19 -1.1
247,358 + MPMX19_05540 0.31 +0.3
247,358 + MPMX19_05540 0.31 -1.4
247,358 + MPMX19_05540 0.31 -0.4
247,358 + MPMX19_05540 0.31 -0.5
247,358 + MPMX19_05540 0.31 -0.8
247,358 + MPMX19_05540 0.31 -0.6
247,358 + MPMX19_05540 0.31 -0.3
247,358 + MPMX19_05540 0.31 -0.2
247,358 + MPMX19_05540 0.31 -0.2
247,359 - MPMX19_05540 0.31 +0.5
247,359 - MPMX19_05540 0.31 +0.6
247,359 - MPMX19_05540 0.31 -0.6
247,359 - MPMX19_05540 0.31 -1.5
247,359 - MPMX19_05540 0.31 +0.6
247,359 - MPMX19_05540 0.31 +0.6
247,359 - MPMX19_05540 0.31 +0.5
247,422 - MPMX19_05540 0.36 +0.8
247,422 - MPMX19_05540 0.36 -0.7
247,422 - MPMX19_05540 0.36 +0.3
247,422 - MPMX19_05540 0.36 +0.6
247,478 + MPMX19_05540 0.41 -0.5
247,478 + MPMX19_05540 0.41 +0.0
247,478 + MPMX19_05540 0.41 -0.2
247,479 - MPMX19_05540 0.41 +2.4
247,479 - MPMX19_05540 0.41 +1.0
247,479 - MPMX19_05540 0.41 +2.4
247,490 + MPMX19_05540 0.42 +0.2
247,490 + MPMX19_05540 0.42 -0.8
247,490 + MPMX19_05540 0.42 -0.7
247,490 + MPMX19_05540 0.42 -1.4
247,490 + MPMX19_05540 0.42 -1.7
247,490 + MPMX19_05540 0.42 -0.4
247,490 + MPMX19_05540 0.42 -0.3
247,490 + MPMX19_05540 0.42 -0.9
247,490 + MPMX19_05540 0.42 +0.5
247,490 + MPMX19_05540 0.42 +0.3
247,490 + MPMX19_05540 0.42 -1.0
247,491 - MPMX19_05540 0.42 +0.8
247,491 - MPMX19_05540 0.42 -1.9
247,491 - MPMX19_05540 0.42 +0.3
247,491 - MPMX19_05540 0.42 +0.4
247,491 - MPMX19_05540 0.42 -0.3
247,491 - MPMX19_05540 0.42 +0.5
247,491 - MPMX19_05540 0.42 -0.6
247,491 - MPMX19_05540 0.42 +0.0
247,491 - MPMX19_05540 0.42 -0.4
247,491 - MPMX19_05540 0.42 -1.1
247,491 - MPMX19_05540 0.42 -0.0
247,491 - MPMX19_05540 0.42 -0.9
247,491 - MPMX19_05540 0.42 -0.1
247,491 - MPMX19_05540 0.42 -0.2
247,491 - MPMX19_05540 0.42 -0.8
247,574 + MPMX19_05540 0.48 -1.3
247,574 + MPMX19_05540 0.48 +1.4
247,574 + MPMX19_05540 0.48 +0.3
247,574 + MPMX19_05540 0.48 -1.3
247,574 + MPMX19_05540 0.48 +1.0
247,574 + MPMX19_05540 0.48 +1.0
247,574 + MPMX19_05540 0.48 +0.7
247,574 + MPMX19_05540 0.48 +0.0
247,574 + MPMX19_05540 0.48 -0.4
247,574 + MPMX19_05540 0.48 -0.3
247,574 + MPMX19_05540 0.48 -2.2
247,574 + MPMX19_05540 0.48 +1.7
247,574 + MPMX19_05540 0.48 +0.0
247,574 + MPMX19_05540 0.48 +0.5
247,574 + MPMX19_05540 0.48 +0.4
247,575 - MPMX19_05540 0.48 -0.2
247,575 - MPMX19_05540 0.48 +0.9
247,575 - MPMX19_05540 0.48 -0.7
247,575 - MPMX19_05540 0.48 +1.2
247,575 - MPMX19_05540 0.48 +0.0
247,575 - MPMX19_05540 0.48 -0.1
247,575 - MPMX19_05540 0.48 -0.2
247,575 - MPMX19_05540 0.48 +0.1
247,575 - MPMX19_05540 0.48 +1.3
247,575 - MPMX19_05540 0.48 +1.9
247,575 - MPMX19_05540 0.48 +0.1
247,575 - MPMX19_05540 0.48 +0.1
247,575 - MPMX19_05540 0.48 +0.0
247,575 - MPMX19_05540 0.48 -1.0
247,575 - MPMX19_05540 0.48 -0.4
247,679 + MPMX19_05540 0.57 +0.2
247,679 + MPMX19_05540 0.57 -0.8
247,679 + MPMX19_05540 0.57 +0.0
247,679 + MPMX19_05540 0.57 -0.5
247,679 + MPMX19_05540 0.57 -0.6
247,680 - MPMX19_05540 0.57 -0.2
247,680 - MPMX19_05540 0.57 +0.6
247,680 - MPMX19_05540 0.57 -0.4
247,680 - MPMX19_05540 0.57 -0.7

Or see this region's nucleotide sequence