Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05157

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05156 and MPMX19_05157 are separated by 319 nucleotidesMPMX19_05157 and MPMX19_05158 are separated by 98 nucleotides MPMX19_05156: MPMX19_05156 - hypothetical protein, at 654,806 to 655,540 _05156 MPMX19_05157: MPMX19_05157 - hypothetical protein, at 655,860 to 656,849 _05157 MPMX19_05158: MPMX19_05158 - Adaptive-response sensory-kinase SasA, at 656,948 to 658,513 _05158 Position (kb) 655 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.287 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.443 kb on + strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.478 kb on - strandat 655.561 kb on + strandat 655.561 kb on + strandat 655.675 kb on - strandat 655.683 kb on + strandat 656.098 kb on - strand, within MPMX19_05157at 656.253 kb on + strand, within MPMX19_05157at 656.254 kb on - strand, within MPMX19_05157at 656.640 kb on + strand, within MPMX19_05157at 656.640 kb on + strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.641 kb on - strand, within MPMX19_05157at 656.691 kb on + strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 656.692 kb on - strand, within MPMX19_05157at 657.329 kb on + strand, within MPMX19_05158at 657.329 kb on + strand, within MPMX19_05158at 657.330 kb on - strand, within MPMX19_05158at 657.330 kb on - strand, within MPMX19_05158at 657.479 kb on - strand, within MPMX19_05158at 657.479 kb on - strand, within MPMX19_05158at 657.626 kb on - strand, within MPMX19_05158at 657.626 kb on - strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.636 kb on + strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158at 657.637 kb on - strand, within MPMX19_05158

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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655,005 + MPMX19_05156 0.27 -0.8
655,005 + MPMX19_05156 0.27 -0.1
655,005 + MPMX19_05156 0.27 -1.5
655,005 + MPMX19_05156 0.27 +0.5
655,006 - MPMX19_05156 0.27 -0.3
655,006 - MPMX19_05156 0.27 -1.5
655,006 - MPMX19_05156 0.27 +0.3
655,006 - MPMX19_05156 0.27 +0.9
655,006 - MPMX19_05156 0.27 -2.6
655,017 + MPMX19_05156 0.29 -1.5
655,017 + MPMX19_05156 0.29 -2.5
655,017 + MPMX19_05156 0.29 +1.0
655,017 + MPMX19_05156 0.29 -0.0
655,017 + MPMX19_05156 0.29 -0.0
655,018 - MPMX19_05156 0.29 +0.0
655,018 - MPMX19_05156 0.29 +0.4
655,018 - MPMX19_05156 0.29 +1.2
655,018 - MPMX19_05156 0.29 -0.1
655,018 - MPMX19_05156 0.29 -0.1
655,018 - MPMX19_05156 0.29 +0.7
655,018 - MPMX19_05156 0.29 -2.9
655,146 + MPMX19_05156 0.46 +1.1
655,146 + MPMX19_05156 0.46 -0.2
655,146 + MPMX19_05156 0.46 -1.3
655,146 + MPMX19_05156 0.46 -0.1
655,146 + MPMX19_05156 0.46 +0.2
655,146 + MPMX19_05156 0.46 +1.5
655,147 - MPMX19_05156 0.46 +0.5
655,147 - MPMX19_05156 0.46 +0.5
655,147 - MPMX19_05156 0.46 -0.1
655,147 - MPMX19_05156 0.46 +0.8
655,147 - MPMX19_05156 0.46 +0.3
655,287 + MPMX19_05156 0.65 -1.3
655,299 + MPMX19_05156 0.67 -1.5
655,299 + MPMX19_05156 0.67 -0.6
655,300 - MPMX19_05156 0.67 +1.8
655,300 - MPMX19_05156 0.67 -1.8
655,300 - MPMX19_05156 0.67 -0.1
655,372 + MPMX19_05156 0.77 -1.0
655,372 + MPMX19_05156 0.77 +0.8
655,372 + MPMX19_05156 0.77 -0.5
655,372 + MPMX19_05156 0.77 -0.6
655,372 + MPMX19_05156 0.77 +0.7
655,372 + MPMX19_05156 0.77 -2.2
655,372 + MPMX19_05156 0.77 -0.5
655,373 - MPMX19_05156 0.77 +0.3
655,373 - MPMX19_05156 0.77 -1.1
655,373 - MPMX19_05156 0.77 -0.7
655,373 - MPMX19_05156 0.77 -0.7
655,373 - MPMX19_05156 0.77 +0.5
655,373 - MPMX19_05156 0.77 -1.3
655,373 - MPMX19_05156 0.77 -0.3
655,373 - MPMX19_05156 0.77 -1.3
655,373 - MPMX19_05156 0.77 +1.0
655,373 - MPMX19_05156 0.77 +0.5
655,373 - MPMX19_05156 0.77 -0.4
655,443 + MPMX19_05156 0.87 -1.8
655,444 - MPMX19_05156 0.87 +0.3
655,444 - MPMX19_05156 0.87 +0.3
655,478 - +1.8
655,561 + -0.1
655,561 + +0.3
655,675 - -1.8
655,683 + -0.7
656,098 - MPMX19_05157 0.24 +1.4
656,253 + MPMX19_05157 0.40 -0.8
656,254 - MPMX19_05157 0.40 -0.0
656,640 + MPMX19_05157 0.79 +1.2
656,640 + MPMX19_05157 0.79 -0.1
656,641 - MPMX19_05157 0.79 +1.7
656,641 - MPMX19_05157 0.79 +1.7
656,641 - MPMX19_05157 0.79 -0.3
656,641 - MPMX19_05157 0.79 +1.2
656,641 - MPMX19_05157 0.79 -0.5
656,641 - MPMX19_05157 0.79 +0.3
656,641 - MPMX19_05157 0.79 -1.5
656,641 - MPMX19_05157 0.79 +0.6
656,641 - MPMX19_05157 0.79 -2.5
656,691 + MPMX19_05157 0.84 -0.4
656,692 - MPMX19_05157 0.84 +1.1
656,692 - MPMX19_05157 0.84 +0.5
656,692 - MPMX19_05157 0.84 -0.2
657,329 + MPMX19_05158 0.24 -0.4
657,329 + MPMX19_05158 0.24 +0.3
657,330 - MPMX19_05158 0.24 +2.1
657,330 - MPMX19_05158 0.24 -0.5
657,479 - MPMX19_05158 0.34 +0.1
657,479 - MPMX19_05158 0.34 -0.2
657,626 - MPMX19_05158 0.43 +0.5
657,626 - MPMX19_05158 0.43 +2.2
657,636 + MPMX19_05158 0.44 +0.1
657,636 + MPMX19_05158 0.44 -1.1
657,636 + MPMX19_05158 0.44 -1.0
657,636 + MPMX19_05158 0.44 +0.5
657,637 - MPMX19_05158 0.44 +0.9
657,637 - MPMX19_05158 0.44 -0.5
657,637 - MPMX19_05158 0.44 -0.7
657,637 - MPMX19_05158 0.44 -0.3
657,637 - MPMX19_05158 0.44 +0.3
657,637 - MPMX19_05158 0.44 +0.5
657,637 - MPMX19_05158 0.44 -1.0
657,637 - MPMX19_05158 0.44 -0.7
657,637 - MPMX19_05158 0.44 +1.2
657,637 - MPMX19_05158 0.44 -1.9
657,637 - MPMX19_05158 0.44 -0.5
657,637 - MPMX19_05158 0.44 -1.0

Or see this region's nucleotide sequence