Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05115 and MPMX19_05116 are separated by 172 nucleotides MPMX19_05116 and MPMX19_05117 are separated by 266 nucleotides MPMX19_05117 and MPMX19_05118 are separated by 238 nucleotides
MPMX19_05115: MPMX19_05115 - Transcriptional regulatory protein DegU, at 600,585 to 601,235
_05115
MPMX19_05116: MPMX19_05116 - hypothetical protein, at 601,408 to 601,869
_05116
MPMX19_05117: MPMX19_05117 - HTH-type transcriptional regulator HexR, at 602,136 to 603,053
_05117
MPMX19_05118: MPMX19_05118 - Phosphogluconate dehydratase, at 603,292 to 605,130
_05118
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.168 kb on + strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.169 kb on - strand, within MPMX19_05115 at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.382 kb on + strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.383 kb on - strand at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.490 kb on + strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.491 kb on - strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.775 kb on + strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 601.776 kb on - strand, within MPMX19_05116 at 602.002 kb on - strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.018 kb on + strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.019 kb on - strand at 602.065 kb on + strand at 602.065 kb on + strand at 602.065 kb on + strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.066 kb on - strand at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.284 kb on + strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.285 kb on - strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.746 kb on + strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 602.747 kb on - strand, within MPMX19_05117 at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.003 kb on + strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.004 kb on - strand at 603.005 kb on + strand at 603.005 kb on + strand at 603.006 kb on - strand at 603.006 kb on - strand at 603.006 kb on - strand at 603.017 kb on + strand at 603.017 kb on + strand at 603.017 kb on + strand at 603.018 kb on - strand at 603.018 kb on - strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.058 kb on + strand at 603.059 kb on - strand at 603.059 kb on - strand at 603.059 kb on - strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.064 kb on + strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.065 kb on - strand at 603.151 kb on + strand at 603.151 kb on + strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.152 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.203 kb on - strand at 603.241 kb on + strand at 603.241 kb on + strand at 603.241 kb on + strand at 603.526 kb on + strand, within MPMX19_05118
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 601,168 + MPMX19_05115 0.90 +0.5 601,168 + MPMX19_05115 0.90 +0.1 601,168 + MPMX19_05115 0.90 -0.4 601,168 + MPMX19_05115 0.90 -0.9 601,168 + MPMX19_05115 0.90 -0.1 601,168 + MPMX19_05115 0.90 -0.4 601,168 + MPMX19_05115 0.90 -0.6 601,168 + MPMX19_05115 0.90 +0.5 601,169 - MPMX19_05115 0.90 +1.3 601,169 - MPMX19_05115 0.90 -1.5 601,169 - MPMX19_05115 0.90 -0.5 601,169 - MPMX19_05115 0.90 -0.1 601,382 + +0.2 601,382 + -1.3 601,382 + -0.6 601,382 + -1.5 601,382 + -1.8 601,382 + -1.0 601,383 - -0.8 601,383 - -0.2 601,383 - -0.0 601,383 - +0.2 601,383 - -0.6 601,383 - -2.4 601,383 - +0.4 601,490 + MPMX19_05116 0.18 -0.1 601,490 + MPMX19_05116 0.18 +0.5 601,490 + MPMX19_05116 0.18 -0.5 601,490 + MPMX19_05116 0.18 -1.6 601,490 + MPMX19_05116 0.18 -0.5 601,490 + MPMX19_05116 0.18 -0.1 601,490 + MPMX19_05116 0.18 -2.0 601,490 + MPMX19_05116 0.18 -0.8 601,490 + MPMX19_05116 0.18 -2.6 601,490 + MPMX19_05116 0.18 -1.3 601,490 + MPMX19_05116 0.18 -0.2 601,490 + MPMX19_05116 0.18 -1.2 601,490 + MPMX19_05116 0.18 -1.9 601,490 + MPMX19_05116 0.18 +1.1 601,490 + MPMX19_05116 0.18 +1.5 601,490 + MPMX19_05116 0.18 -0.2 601,490 + MPMX19_05116 0.18 +0.0 601,490 + MPMX19_05116 0.18 +0.4 601,490 + MPMX19_05116 0.18 +0.3 601,490 + MPMX19_05116 0.18 -0.7 601,490 + MPMX19_05116 0.18 +0.8 601,490 + MPMX19_05116 0.18 +0.3 601,490 + MPMX19_05116 0.18 +0.9 601,490 + MPMX19_05116 0.18 +0.0 601,490 + MPMX19_05116 0.18 -2.1 601,490 + MPMX19_05116 0.18 +0.3 601,490 + MPMX19_05116 0.18 -1.1 601,491 - MPMX19_05116 0.18 -1.6 601,491 - MPMX19_05116 0.18 +0.4 601,491 - MPMX19_05116 0.18 -0.1 601,491 - MPMX19_05116 0.18 -1.2 601,491 - MPMX19_05116 0.18 -2.0 601,491 - MPMX19_05116 0.18 +0.4 601,491 - MPMX19_05116 0.18 -0.6 601,491 - MPMX19_05116 0.18 +0.4 601,491 - MPMX19_05116 0.18 +0.4 601,491 - MPMX19_05116 0.18 -0.3 601,491 - MPMX19_05116 0.18 +1.7 601,491 - MPMX19_05116 0.18 -0.1 601,491 - MPMX19_05116 0.18 +1.0 601,491 - MPMX19_05116 0.18 -0.8 601,491 - MPMX19_05116 0.18 -2.9 601,491 - MPMX19_05116 0.18 +0.3 601,491 - MPMX19_05116 0.18 -1.4 601,491 - MPMX19_05116 0.18 -0.1 601,491 - MPMX19_05116 0.18 -1.2 601,491 - MPMX19_05116 0.18 +0.2 601,491 - MPMX19_05116 0.18 -0.3 601,491 - MPMX19_05116 0.18 -0.5 601,491 - MPMX19_05116 0.18 -1.7 601,491 - MPMX19_05116 0.18 +0.2 601,491 - MPMX19_05116 0.18 +0.7 601,775 + MPMX19_05116 0.79 -0.2 601,775 + MPMX19_05116 0.79 -1.8 601,775 + MPMX19_05116 0.79 -2.1 601,775 + MPMX19_05116 0.79 -1.2 601,775 + MPMX19_05116 0.79 +0.0 601,775 + MPMX19_05116 0.79 -1.5 601,775 + MPMX19_05116 0.79 -0.8 601,775 + MPMX19_05116 0.79 -2.5 601,776 - MPMX19_05116 0.80 -0.1 601,776 - MPMX19_05116 0.80 +0.7 601,776 - MPMX19_05116 0.80 +0.9 601,776 - MPMX19_05116 0.80 +0.5 601,776 - MPMX19_05116 0.80 +1.4 601,776 - MPMX19_05116 0.80 -0.6 601,776 - MPMX19_05116 0.80 -0.7 601,776 - MPMX19_05116 0.80 -0.4 602,002 - +1.0 602,018 + -2.0 602,018 + -0.6 602,018 + -1.3 602,018 + -0.4 602,018 + -1.2 602,018 + -0.3 602,018 + -1.5 602,018 + -1.0 602,018 + -1.5 602,018 + -0.8 602,018 + -0.8 602,019 - -0.1 602,019 - +0.0 602,019 - +0.1 602,019 - -0.6 602,019 - -2.7 602,065 + -0.3 602,065 + -2.4 602,065 + +0.8 602,066 - +0.6 602,066 - -1.3 602,066 - +0.4 602,066 - -1.4 602,066 - -0.7 602,066 - +0.5 602,066 - -1.3 602,066 - -0.7 602,066 - +0.8 602,066 - -2.3 602,284 + MPMX19_05117 0.16 -1.0 602,284 + MPMX19_05117 0.16 -0.1 602,284 + MPMX19_05117 0.16 -0.1 602,284 + MPMX19_05117 0.16 -1.3 602,284 + MPMX19_05117 0.16 -0.8 602,284 + MPMX19_05117 0.16 -1.7 602,284 + MPMX19_05117 0.16 +0.2 602,284 + MPMX19_05117 0.16 +0.3 602,284 + MPMX19_05117 0.16 -1.5 602,284 + MPMX19_05117 0.16 -0.3 602,284 + MPMX19_05117 0.16 +1.2 602,284 + MPMX19_05117 0.16 +0.8 602,284 + MPMX19_05117 0.16 -1.0 602,284 + MPMX19_05117 0.16 -0.4 602,284 + MPMX19_05117 0.16 -0.1 602,284 + MPMX19_05117 0.16 +0.5 602,285 - MPMX19_05117 0.16 -1.1 602,285 - MPMX19_05117 0.16 -0.2 602,285 - MPMX19_05117 0.16 -1.1 602,285 - MPMX19_05117 0.16 -2.2 602,285 - MPMX19_05117 0.16 -0.6 602,285 - MPMX19_05117 0.16 -1.8 602,285 - MPMX19_05117 0.16 +0.4 602,285 - MPMX19_05117 0.16 +0.5 602,285 - MPMX19_05117 0.16 -0.2 602,285 - MPMX19_05117 0.16 +0.1 602,285 - MPMX19_05117 0.16 -1.2 602,746 + MPMX19_05117 0.66 -0.6 602,746 + MPMX19_05117 0.66 -0.1 602,746 + MPMX19_05117 0.66 -2.0 602,746 + MPMX19_05117 0.66 -0.2 602,746 + MPMX19_05117 0.66 -0.2 602,746 + MPMX19_05117 0.66 -0.1 602,747 - MPMX19_05117 0.67 -1.5 602,747 - MPMX19_05117 0.67 +0.3 602,747 - MPMX19_05117 0.67 +0.8 602,747 - MPMX19_05117 0.67 -1.0 602,747 - MPMX19_05117 0.67 -2.5 602,747 - MPMX19_05117 0.67 -0.2 603,003 + -0.2 603,003 + -0.6 603,003 + +0.8 603,003 + -1.5 603,003 + +0.8 603,003 + -1.2 603,003 + +0.1 603,003 + +0.9 603,003 + +0.5 603,003 + +1.1 603,003 + -0.1 603,004 - +0.6 603,004 - +1.0 603,004 - -1.1 603,004 - -0.6 603,004 - -0.7 603,004 - -0.8 603,004 - -1.2 603,004 - -2.5 603,004 - -1.3 603,004 - +1.5 603,004 - +0.7 603,005 + +0.3 603,005 + +0.5 603,006 - -0.4 603,006 - -1.0 603,006 - -0.8 603,017 + +1.2 603,017 + -1.5 603,017 + -0.3 603,018 - -0.7 603,018 - -0.4 603,058 + -1.4 603,058 + -0.2 603,058 + -0.1 603,058 + -0.1 603,059 - +0.6 603,059 - -1.3 603,059 - -0.1 603,064 + -1.7 603,064 + -1.7 603,064 + +0.3 603,064 + +1.2 603,064 + +0.0 603,064 + +0.1 603,064 + -1.6 603,064 + -1.1 603,064 + -2.2 603,064 + -0.8 603,064 + -0.8 603,064 + +0.2 603,064 + -1.7 603,064 + -0.6 603,064 + -1.7 603,064 + -0.1 603,064 + +0.0 603,064 + -1.2 603,064 + +1.3 603,064 + -1.1 603,064 + -0.8 603,065 - -0.9 603,065 - -1.8 603,065 - +1.2 603,065 - -1.6 603,065 - +0.2 603,065 - -0.9 603,065 - -0.5 603,065 - -0.6 603,065 - -1.0 603,065 - +0.3 603,065 - +0.5 603,065 - -1.1 603,065 - -0.1 603,065 - -0.4 603,065 - -0.7 603,065 - -0.6 603,065 - +0.6 603,065 - +0.5 603,065 - -2.2 603,065 - -0.3 603,065 - -1.2 603,065 - -1.4 603,151 + +0.2 603,151 + +0.3 603,152 - -0.5 603,152 - +1.1 603,152 - +0.4 603,152 - -2.0 603,203 - -0.8 603,203 - -0.2 603,203 - -0.3 603,203 - -1.0 603,241 + -2.2 603,241 + -0.5 603,241 + -0.4 603,526 + MPMX19_05118 0.13 -0.5
Or see this region's nucleotide sequence