Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04985 and MPMX19_04986 are separated by 122 nucleotides MPMX19_04986 and MPMX19_04987 are separated by 41 nucleotides MPMX19_04987 and MPMX19_04988 are separated by 28 nucleotides
MPMX19_04985: MPMX19_04985 - HTH-type transcriptional regulator DmlR, at 462,286 to 463,206
_04985
MPMX19_04986: MPMX19_04986 - hypothetical protein, at 463,329 to 463,973
_04986
MPMX19_04987: MPMX19_04987 - hypothetical protein, at 464,015 to 464,938
_04987
MPMX19_04988: MPMX19_04988 - hypothetical protein, at 464,967 to 465,848
_04988
Position (kb) 463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 462.458 kb on + strand, within MPMX19_04985 at 462.459 kb on - strand, within MPMX19_04985 at 462.893 kb on + strand, within MPMX19_04985 at 463.172 kb on + strand at 463.172 kb on + strand at 463.172 kb on + strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.242 kb on + strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.383 kb on + strand at 463.383 kb on + strand at 463.384 kb on - strand at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986 at 464.268 kb on + strand, within MPMX19_04987 at 464.268 kb on + strand, within MPMX19_04987 at 464.268 kb on + strand, within MPMX19_04987 at 464.269 kb on - strand, within MPMX19_04987 at 464.269 kb on - strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.300 kb on + strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.301 kb on - strand, within MPMX19_04987 at 464.324 kb on + strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.325 kb on - strand, within MPMX19_04987 at 464.327 kb on + strand, within MPMX19_04987 at 464.327 kb on + strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.328 kb on - strand, within MPMX19_04987 at 464.574 kb on - strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.789 kb on + strand, within MPMX19_04987 at 464.790 kb on - strand, within MPMX19_04987 at 464.790 kb on - strand, within MPMX19_04987
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 462,458 + MPMX19_04985 0.19 -1.6 462,459 - MPMX19_04985 0.19 +1.0 462,893 + MPMX19_04985 0.66 -0.5 463,172 + -2.3 463,172 + -0.5 463,172 + +1.6 463,173 - -0.1 463,173 - +0.3 463,173 - -0.0 463,242 + +0.5 463,243 - +0.2 463,243 - -1.2 463,243 - -0.1 463,243 - +0.1 463,353 + -0.6 463,353 + +0.9 463,353 + -1.0 463,353 + +1.3 463,353 + -0.4 463,353 + +1.1 463,353 + +0.8 463,353 + -0.9 463,353 + +0.1 463,353 + -0.1 463,353 + +1.6 463,353 + -1.4 463,353 + +0.6 463,353 + -0.6 463,353 + -1.6 463,353 + -0.9 463,354 - -0.8 463,354 - +0.8 463,354 - -2.0 463,354 - -2.2 463,354 - -0.4 463,354 - -2.7 463,354 - +0.8 463,354 - +0.8 463,383 + -1.1 463,383 + -1.0 463,384 - -1.2 463,515 + MPMX19_04986 0.29 +0.2 463,515 + MPMX19_04986 0.29 -1.0 463,515 + MPMX19_04986 0.29 -1.6 463,516 - MPMX19_04986 0.29 +1.4 463,516 - MPMX19_04986 0.29 -1.4 463,695 + MPMX19_04986 0.57 +0.3 463,695 + MPMX19_04986 0.57 +0.2 463,696 - MPMX19_04986 0.57 +0.4 463,696 - MPMX19_04986 0.57 -1.8 464,268 + MPMX19_04987 0.27 -0.4 464,268 + MPMX19_04987 0.27 +0.4 464,268 + MPMX19_04987 0.27 +0.6 464,269 - MPMX19_04987 0.27 +2.0 464,269 - MPMX19_04987 0.27 -1.4 464,300 + MPMX19_04987 0.31 -0.3 464,300 + MPMX19_04987 0.31 -1.3 464,300 + MPMX19_04987 0.31 -0.9 464,300 + MPMX19_04987 0.31 +2.1 464,300 + MPMX19_04987 0.31 +0.5 464,300 + MPMX19_04987 0.31 +0.6 464,300 + MPMX19_04987 0.31 +1.2 464,300 + MPMX19_04987 0.31 -0.2 464,300 + MPMX19_04987 0.31 -1.7 464,300 + MPMX19_04987 0.31 -2.3 464,300 + MPMX19_04987 0.31 -1.2 464,300 + MPMX19_04987 0.31 -0.4 464,300 + MPMX19_04987 0.31 +0.1 464,300 + MPMX19_04987 0.31 -0.4 464,300 + MPMX19_04987 0.31 -0.0 464,300 + MPMX19_04987 0.31 +0.3 464,300 + MPMX19_04987 0.31 +2.3 464,300 + MPMX19_04987 0.31 -1.3 464,300 + MPMX19_04987 0.31 -0.9 464,300 + MPMX19_04987 0.31 +1.1 464,300 + MPMX19_04987 0.31 +0.7 464,300 + MPMX19_04987 0.31 +1.2 464,300 + MPMX19_04987 0.31 -1.3 464,300 + MPMX19_04987 0.31 -1.2 464,300 + MPMX19_04987 0.31 +2.3 464,300 + MPMX19_04987 0.31 +0.7 464,300 + MPMX19_04987 0.31 -0.8 464,300 + MPMX19_04987 0.31 +1.1 464,300 + MPMX19_04987 0.31 +0.6 464,300 + MPMX19_04987 0.31 +0.6 464,300 + MPMX19_04987 0.31 -0.6 464,300 + MPMX19_04987 0.31 +0.2 464,301 - MPMX19_04987 0.31 +0.0 464,301 - MPMX19_04987 0.31 +0.9 464,301 - MPMX19_04987 0.31 +1.0 464,301 - MPMX19_04987 0.31 -0.1 464,301 - MPMX19_04987 0.31 +0.7 464,301 - MPMX19_04987 0.31 -0.2 464,301 - MPMX19_04987 0.31 -1.3 464,301 - MPMX19_04987 0.31 -0.4 464,301 - MPMX19_04987 0.31 -0.6 464,301 - MPMX19_04987 0.31 -1.4 464,301 - MPMX19_04987 0.31 -1.7 464,301 - MPMX19_04987 0.31 -2.3 464,301 - MPMX19_04987 0.31 +1.3 464,301 - MPMX19_04987 0.31 +0.9 464,301 - MPMX19_04987 0.31 -1.8 464,301 - MPMX19_04987 0.31 -2.2 464,301 - MPMX19_04987 0.31 -0.9 464,301 - MPMX19_04987 0.31 -0.6 464,301 - MPMX19_04987 0.31 +1.6 464,301 - MPMX19_04987 0.31 +0.2 464,301 - MPMX19_04987 0.31 +0.1 464,301 - MPMX19_04987 0.31 -0.4 464,301 - MPMX19_04987 0.31 -1.3 464,324 + MPMX19_04987 0.33 -0.9 464,325 - MPMX19_04987 0.34 -0.8 464,325 - MPMX19_04987 0.34 +0.6 464,325 - MPMX19_04987 0.34 +0.7 464,325 - MPMX19_04987 0.34 +0.1 464,327 + MPMX19_04987 0.34 -0.5 464,327 + MPMX19_04987 0.34 -1.4 464,328 - MPMX19_04987 0.34 -1.3 464,328 - MPMX19_04987 0.34 +0.8 464,328 - MPMX19_04987 0.34 -0.8 464,328 - MPMX19_04987 0.34 -0.6 464,328 - MPMX19_04987 0.34 +1.6 464,574 - MPMX19_04987 0.60 +0.1 464,789 + MPMX19_04987 0.84 +0.1 464,789 + MPMX19_04987 0.84 -0.4 464,789 + MPMX19_04987 0.84 +0.7 464,789 + MPMX19_04987 0.84 -1.3 464,790 - MPMX19_04987 0.84 -0.6 464,790 - MPMX19_04987 0.84 +0.1
Or see this region's nucleotide sequence