Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04772 and MPMX19_04773 are separated by 495 nucleotides MPMX19_04773 and MPMX19_04774 are separated by 361 nucleotides MPMX19_04774 and MPMX19_04775 are separated by 153 nucleotides
MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016
_04772
MPMX19_04773: MPMX19_04773 - tRNA-Ser, at 165,512 to 165,605
_04773
MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016
_04774
MPMX19_04775: MPMX19_04775 - hypothetical protein, at 167,170 to 169,359
_04775
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.175 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.843 kb on - strand at 165.851 kb on + strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 166.285 kb on + strand, within MPMX19_04774 at 166.286 kb on - strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.511 kb on - strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.565 kb on - strand, within MPMX19_04774 at 166.597 kb on + strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.739 kb on - strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.930 kb on + strand at 166.930 kb on + strand at 166.931 kb on - strand at 166.931 kb on - strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.028 kb on + strand at 167.029 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 165,175 + -0.2 165,391 + -0.2 165,391 + -0.3 165,391 + -1.3 165,391 + -1.4 165,391 + +1.1 165,392 - -0.5 165,392 - -0.0 165,392 - +1.0 165,392 - -3.3 165,392 - +0.3 165,778 + -0.8 165,778 + -0.1 165,778 + +0.1 165,778 + -0.3 165,778 + -0.1 165,778 + +0.9 165,778 + +1.2 165,778 + +0.8 165,779 - +0.2 165,779 - +0.2 165,779 - +0.3 165,779 - -0.4 165,779 - -0.6 165,779 - -1.3 165,843 - -0.5 165,851 + -0.4 165,852 - -0.1 165,852 - +0.7 165,852 - -1.3 165,852 - -0.4 165,852 - -0.1 165,852 - -0.9 165,900 - -2.0 165,900 - +0.1 165,900 - -0.6 165,900 - +0.7 166,285 + MPMX19_04774 0.30 -0.3 166,286 - MPMX19_04774 0.30 -0.8 166,333 + MPMX19_04774 0.35 -1.6 166,333 + MPMX19_04774 0.35 -1.1 166,333 + MPMX19_04774 0.35 +0.1 166,333 + MPMX19_04774 0.35 +0.1 166,333 + MPMX19_04774 0.35 -0.5 166,333 + MPMX19_04774 0.35 -1.0 166,333 + MPMX19_04774 0.35 -0.9 166,333 + MPMX19_04774 0.35 +0.5 166,334 - MPMX19_04774 0.35 +0.2 166,334 - MPMX19_04774 0.35 +2.1 166,334 - MPMX19_04774 0.35 -0.6 166,334 - MPMX19_04774 0.35 +0.7 166,334 - MPMX19_04774 0.35 +0.9 166,366 + MPMX19_04774 0.38 -0.8 166,366 + MPMX19_04774 0.38 +0.7 166,366 + MPMX19_04774 0.38 +0.5 166,366 + MPMX19_04774 0.38 -0.3 166,366 + MPMX19_04774 0.38 -0.6 166,366 + MPMX19_04774 0.38 +0.9 166,366 + MPMX19_04774 0.38 -2.0 166,366 + MPMX19_04774 0.38 -0.8 166,366 + MPMX19_04774 0.38 +0.1 166,366 + MPMX19_04774 0.38 +0.2 166,366 + MPMX19_04774 0.38 -0.1 166,367 - MPMX19_04774 0.38 +0.5 166,367 - MPMX19_04774 0.38 +0.9 166,367 - MPMX19_04774 0.38 +1.5 166,367 - MPMX19_04774 0.38 +0.8 166,367 - MPMX19_04774 0.38 +0.0 166,367 - MPMX19_04774 0.38 +0.7 166,367 - MPMX19_04774 0.38 -0.1 166,367 - MPMX19_04774 0.38 -0.3 166,367 - MPMX19_04774 0.38 -0.1 166,367 - MPMX19_04774 0.38 +0.5 166,367 - MPMX19_04774 0.38 +1.2 166,367 - MPMX19_04774 0.38 +0.5 166,367 - MPMX19_04774 0.38 -1.1 166,390 + MPMX19_04774 0.40 -0.6 166,390 + MPMX19_04774 0.40 +1.1 166,390 + MPMX19_04774 0.40 -0.6 166,510 + MPMX19_04774 0.52 -1.3 166,510 + MPMX19_04774 0.52 +0.8 166,511 - MPMX19_04774 0.52 -1.0 166,564 + MPMX19_04774 0.57 -1.8 166,564 + MPMX19_04774 0.57 +0.9 166,565 - MPMX19_04774 0.57 +0.7 166,597 + MPMX19_04774 0.60 +1.0 166,598 - MPMX19_04774 0.60 +0.7 166,598 - MPMX19_04774 0.60 -0.1 166,598 - MPMX19_04774 0.60 -0.7 166,598 - MPMX19_04774 0.60 -1.3 166,739 - MPMX19_04774 0.74 +0.7 166,801 + MPMX19_04774 0.79 -0.3 166,801 + MPMX19_04774 0.79 -1.3 166,801 + MPMX19_04774 0.79 +0.3 166,801 + MPMX19_04774 0.79 -0.1 166,801 + MPMX19_04774 0.79 -0.3 166,802 - MPMX19_04774 0.80 +1.5 166,802 - MPMX19_04774 0.80 +0.5 166,802 - MPMX19_04774 0.80 -1.3 166,802 - MPMX19_04774 0.80 +0.1 166,930 + -0.1 166,930 + -1.1 166,931 - -0.5 166,931 - +0.1 167,014 + -0.0 167,014 + +0.3 167,014 + -0.6 167,014 + +0.1 167,015 - -1.5 167,015 - -1.8 167,015 - +1.4 167,028 + -1.0 167,029 - +1.5 167,050 - +0.6 167,050 - +0.1 167,050 - +0.5 167,692 + MPMX19_04775 0.24 -0.3 167,692 + MPMX19_04775 0.24 +0.1 167,692 + MPMX19_04775 0.24 -0.8 167,692 + MPMX19_04775 0.24 +1.0 167,693 - MPMX19_04775 0.24 +0.5 167,693 - MPMX19_04775 0.24 -1.1 167,693 - MPMX19_04775 0.24 -0.1 167,693 - MPMX19_04775 0.24 -0.6 167,693 - MPMX19_04775 0.24 -0.9
Or see this region's nucleotide sequence