Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04667

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04665 and MPMX19_04666 are separated by 29 nucleotidesMPMX19_04666 and MPMX19_04667 are separated by 154 nucleotidesMPMX19_04667 and MPMX19_04668 are separated by 19 nucleotides MPMX19_04665: MPMX19_04665 - hypothetical protein, at 52,278 to 52,586 _04665 MPMX19_04666: MPMX19_04666 - hypothetical protein, at 52,616 to 53,212 _04666 MPMX19_04667: MPMX19_04667 - Acetyl-CoA acetyltransferase, at 53,367 to 54,566 _04667 MPMX19_04668: MPMX19_04668 - HTH-type transcriptional regulator DmlR, at 54,586 to 55,485 _04668 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1at 52.410 kb on + strand, within MPMX19_04665at 52.410 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.456 kb on - strand, within MPMX19_04665at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.751 kb on + strand, within MPMX19_04667at 53.752 kb on - strand, within MPMX19_04667at 53.752 kb on - strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.838 kb on + strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.839 kb on - strand, within MPMX19_04667at 53.889 kb on + strand, within MPMX19_04667at 53.890 kb on - strand, within MPMX19_04667at 53.890 kb on - strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.919 kb on + strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 53.920 kb on - strand, within MPMX19_04667at 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.587 kb on + strandat 54.588 kb on - strandat 54.588 kb on - strandat 54.909 kb on - strand, within MPMX19_04668at 54.971 kb on + strand, within MPMX19_04668at 54.971 kb on + strand, within MPMX19_04668at 54.972 kb on - strand, within MPMX19_04668at 55.286 kb on + strand, within MPMX19_04668at 55.286 kb on + strand, within MPMX19_04668at 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.517 kb on + strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.518 kb on - strandat 55.537 kb on + strandat 55.537 kb on + strandat 55.537 kb on + strandat 55.538 kb on - strandat 55.560 kb on + strandat 55.560 kb on + strandat 55.561 kb on - strandat 55.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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52,410 + MPMX19_04665 0.43 -2.1
52,410 + MPMX19_04665 0.43 +1.6
52,455 + MPMX19_04665 0.57 +0.3
52,455 + MPMX19_04665 0.57 +1.3
52,455 + MPMX19_04665 0.57 -0.5
52,455 + MPMX19_04665 0.57 -0.1
52,455 + MPMX19_04665 0.57 -0.2
52,455 + MPMX19_04665 0.57 +0.4
52,455 + MPMX19_04665 0.57 +0.6
52,455 + MPMX19_04665 0.57 +1.0
52,456 - MPMX19_04665 0.58 -0.1
52,938 + MPMX19_04666 0.54 +0.3
52,938 + MPMX19_04666 0.54 -0.8
52,938 + MPMX19_04666 0.54 -0.3
52,938 + MPMX19_04666 0.54 +0.7
52,938 + MPMX19_04666 0.54 -1.6
52,938 + MPMX19_04666 0.54 -0.3
52,938 + MPMX19_04666 0.54 -0.5
52,938 + MPMX19_04666 0.54 +0.3
52,938 + MPMX19_04666 0.54 -1.9
52,938 + MPMX19_04666 0.54 -1.7
52,938 + MPMX19_04666 0.54 +0.7
52,938 + MPMX19_04666 0.54 -0.5
52,938 + MPMX19_04666 0.54 -1.0
52,938 + MPMX19_04666 0.54 -0.4
52,938 + MPMX19_04666 0.54 +0.7
52,938 + MPMX19_04666 0.54 +0.3
52,939 - MPMX19_04666 0.54 -0.1
52,939 - MPMX19_04666 0.54 -0.3
52,939 - MPMX19_04666 0.54 +1.5
52,939 - MPMX19_04666 0.54 +0.4
52,939 - MPMX19_04666 0.54 -0.3
52,939 - MPMX19_04666 0.54 -1.0
52,939 - MPMX19_04666 0.54 -1.4
52,939 - MPMX19_04666 0.54 +1.1
52,939 - MPMX19_04666 0.54 -0.5
52,939 - MPMX19_04666 0.54 +1.7
52,939 - MPMX19_04666 0.54 -1.2
52,939 - MPMX19_04666 0.54 +0.7
52,939 - MPMX19_04666 0.54 +0.6
53,070 + MPMX19_04666 0.76 -0.2
53,070 + MPMX19_04666 0.76 +0.2
53,070 + MPMX19_04666 0.76 -1.5
53,070 + MPMX19_04666 0.76 -1.2
53,071 - MPMX19_04666 0.76 -3.1
53,071 - MPMX19_04666 0.76 +0.9
53,071 - MPMX19_04666 0.76 -0.1
53,751 + MPMX19_04667 0.32 -1.3
53,751 + MPMX19_04667 0.32 -0.0
53,751 + MPMX19_04667 0.32 -0.5
53,751 + MPMX19_04667 0.32 -1.2
53,752 - MPMX19_04667 0.32 -0.4
53,752 - MPMX19_04667 0.32 -0.9
53,838 + MPMX19_04667 0.39 +0.9
53,838 + MPMX19_04667 0.39 -1.0
53,838 + MPMX19_04667 0.39 +0.2
53,838 + MPMX19_04667 0.39 +1.6
53,839 - MPMX19_04667 0.39 -0.8
53,839 - MPMX19_04667 0.39 +0.4
53,839 - MPMX19_04667 0.39 -1.5
53,839 - MPMX19_04667 0.39 +1.3
53,839 - MPMX19_04667 0.39 -0.9
53,839 - MPMX19_04667 0.39 -0.5
53,889 + MPMX19_04667 0.43 -1.7
53,890 - MPMX19_04667 0.44 -1.3
53,890 - MPMX19_04667 0.44 -1.5
53,919 + MPMX19_04667 0.46 -0.5
53,919 + MPMX19_04667 0.46 +0.3
53,919 + MPMX19_04667 0.46 -1.2
53,919 + MPMX19_04667 0.46 +1.1
53,919 + MPMX19_04667 0.46 -1.4
53,919 + MPMX19_04667 0.46 +0.9
53,919 + MPMX19_04667 0.46 -0.1
53,920 - MPMX19_04667 0.46 -0.2
53,920 - MPMX19_04667 0.46 -2.1
53,920 - MPMX19_04667 0.46 +0.0
54,587 + +0.3
54,587 + +0.2
54,587 + -0.1
54,587 + +0.3
54,587 + -1.5
54,588 - -0.9
54,588 - +1.6
54,909 - MPMX19_04668 0.36 -0.7
54,971 + MPMX19_04668 0.43 -0.3
54,971 + MPMX19_04668 0.43 -0.7
54,972 - MPMX19_04668 0.43 -1.3
55,286 + MPMX19_04668 0.78 -0.5
55,286 + MPMX19_04668 0.78 -0.8
55,517 + -1.1
55,517 + -0.1
55,517 + +0.7
55,517 + -0.0
55,517 + -0.5
55,517 + -0.2
55,517 + -1.0
55,517 + +0.0
55,517 + -0.8
55,518 - -1.7
55,518 - +0.1
55,518 - -0.4
55,518 - -0.8
55,518 - +0.1
55,518 - -1.3
55,518 - -0.2
55,518 - -2.8
55,537 + +0.7
55,537 + +1.7
55,537 + +0.1
55,538 - -0.2
55,560 + +0.2
55,560 + -0.8
55,561 - +0.0
55,561 - -1.1

Or see this region's nucleotide sequence