Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04659

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04658 and MPMX19_04659 are separated by 26 nucleotidesMPMX19_04659 and MPMX19_04660 overlap by 8 nucleotidesMPMX19_04660 and MPMX19_04661 overlap by 14 nucleotides MPMX19_04658: MPMX19_04658 - hypothetical protein, at 44,901 to 46,328 _04658 MPMX19_04659: MPMX19_04659 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 46,355 to 47,068 _04659 MPMX19_04660: MPMX19_04660 - Lipopolysaccharide export system ATP-binding protein LptB, at 47,061 to 47,807 _04660 MPMX19_04661: MPMX19_04661 - hypothetical protein, at 47,794 to 48,792 _04661 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.880 kb on + strand, within MPMX19_04658at 45.985 kb on + strand, within MPMX19_04658at 45.986 kb on - strand, within MPMX19_04658at 45.986 kb on - strand, within MPMX19_04658at 46.368 kb on + strandat 46.368 kb on + strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 47.116 kb on + strandat 47.116 kb on + strandat 47.116 kb on + strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.503 kb on + strand, within MPMX19_04660at 47.504 kb on - strand, within MPMX19_04660at 47.567 kb on + strand, within MPMX19_04660at 47.567 kb on + strand, within MPMX19_04660at 47.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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45,373 + MPMX19_04658 0.33 -0.4
45,373 + MPMX19_04658 0.33 +0.7
45,373 + MPMX19_04658 0.33 -0.5
45,373 + MPMX19_04658 0.33 +0.1
45,373 + MPMX19_04658 0.33 -0.7
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 +0.3
45,373 + MPMX19_04658 0.33 -1.1
45,373 + MPMX19_04658 0.33 -2.2
45,373 + MPMX19_04658 0.33 +1.5
45,373 + MPMX19_04658 0.33 +0.2
45,373 + MPMX19_04658 0.33 +1.0
45,373 + MPMX19_04658 0.33 +0.5
45,373 + MPMX19_04658 0.33 +1.7
45,373 + MPMX19_04658 0.33 -0.6
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 +0.3
45,373 + MPMX19_04658 0.33 -1.3
45,373 + MPMX19_04658 0.33 +0.9
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 +0.1
45,373 + MPMX19_04658 0.33 +1.7
45,373 + MPMX19_04658 0.33 -2.3
45,373 + MPMX19_04658 0.33 +0.2
45,373 + MPMX19_04658 0.33 -0.0
45,373 + MPMX19_04658 0.33 +0.9
45,373 + MPMX19_04658 0.33 -1.5
45,373 + MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 -0.1
45,374 - MPMX19_04658 0.33 +0.2
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 -0.7
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 +1.8
45,374 - MPMX19_04658 0.33 -1.8
45,374 - MPMX19_04658 0.33 +2.8
45,374 - MPMX19_04658 0.33 +0.9
45,374 - MPMX19_04658 0.33 -0.1
45,374 - MPMX19_04658 0.33 -0.8
45,374 - MPMX19_04658 0.33 -0.0
45,374 - MPMX19_04658 0.33 +0.6
45,374 - MPMX19_04658 0.33 -1.4
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 -1.2
45,374 - MPMX19_04658 0.33 +0.1
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 -0.5
45,374 - MPMX19_04658 0.33 -1.5
45,374 - MPMX19_04658 0.33 +0.8
45,374 - MPMX19_04658 0.33 -0.3
45,374 - MPMX19_04658 0.33 +0.7
45,374 - MPMX19_04658 0.33 -0.0
45,374 - MPMX19_04658 0.33 +0.0
45,374 - MPMX19_04658 0.33 -0.7
45,374 - MPMX19_04658 0.33 -0.3
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 -0.0
45,374 - MPMX19_04658 0.33 +0.6
45,469 + MPMX19_04658 0.40 -0.7
45,469 + MPMX19_04658 0.40 -1.3
45,469 + MPMX19_04658 0.40 +0.3
45,470 - MPMX19_04658 0.40 -2.1
45,470 - MPMX19_04658 0.40 -0.5
45,470 - MPMX19_04658 0.40 -0.4
45,496 + MPMX19_04658 0.42 +0.5
45,496 + MPMX19_04658 0.42 -1.5
45,496 + MPMX19_04658 0.42 +0.9
45,496 + MPMX19_04658 0.42 +1.0
45,496 + MPMX19_04658 0.42 -3.7
45,496 + MPMX19_04658 0.42 -1.5
45,497 - MPMX19_04658 0.42 -1.1
45,497 - MPMX19_04658 0.42 -0.0
45,497 - MPMX19_04658 0.42 +1.5
45,497 - MPMX19_04658 0.42 -1.5
45,497 - MPMX19_04658 0.42 +0.2
45,497 - MPMX19_04658 0.42 -0.3
45,667 + MPMX19_04658 0.54 -0.1
45,667 + MPMX19_04658 0.54 +0.6
45,667 + MPMX19_04658 0.54 -0.1
45,880 + MPMX19_04658 0.69 +0.1
45,985 + MPMX19_04658 0.76 +1.5
45,986 - MPMX19_04658 0.76 -2.0
45,986 - MPMX19_04658 0.76 -0.1
46,368 + -0.4
46,368 + +0.1
46,369 - -0.1
46,369 - -2.8
46,369 - -0.8
46,369 - +0.7
46,369 - -0.8
46,369 - +0.1
46,369 - -1.8
46,369 - -0.8
46,446 + MPMX19_04659 0.13 +0.7
46,446 + MPMX19_04659 0.13 -0.1
46,446 + MPMX19_04659 0.13 -0.4
46,446 + MPMX19_04659 0.13 +0.1
46,446 + MPMX19_04659 0.13 -2.1
46,446 + MPMX19_04659 0.13 +0.9
46,446 + MPMX19_04659 0.13 +0.7
46,446 + MPMX19_04659 0.13 -0.0
46,446 + MPMX19_04659 0.13 +0.5
46,446 + MPMX19_04659 0.13 +0.2
46,446 + MPMX19_04659 0.13 -1.4
46,446 + MPMX19_04659 0.13 +2.0
46,446 + MPMX19_04659 0.13 +1.1
46,447 - MPMX19_04659 0.13 -0.7
46,447 - MPMX19_04659 0.13 -1.0
46,447 - MPMX19_04659 0.13 -0.8
46,447 - MPMX19_04659 0.13 +1.0
46,447 - MPMX19_04659 0.13 +1.8
46,447 - MPMX19_04659 0.13 +1.0
46,447 - MPMX19_04659 0.13 +0.1
46,447 - MPMX19_04659 0.13 -1.4
46,447 - MPMX19_04659 0.13 -2.4
46,447 - MPMX19_04659 0.13 -0.3
46,447 - MPMX19_04659 0.13 +1.1
46,447 - MPMX19_04659 0.13 +0.9
46,447 - MPMX19_04659 0.13 +0.1
46,447 - MPMX19_04659 0.13 +0.7
46,447 - MPMX19_04659 0.13 +1.7
47,116 + +1.9
47,116 + +1.1
47,116 + +0.6
47,117 - +0.7
47,117 - +0.2
47,194 + MPMX19_04660 0.18 +0.2
47,194 + MPMX19_04660 0.18 -0.4
47,194 + MPMX19_04660 0.18 +1.5
47,194 + MPMX19_04660 0.18 +0.7
47,194 + MPMX19_04660 0.18 +0.4
47,194 + MPMX19_04660 0.18 -1.7
47,194 + MPMX19_04660 0.18 +0.2
47,194 + MPMX19_04660 0.18 -0.7
47,194 + MPMX19_04660 0.18 +1.1
47,194 + MPMX19_04660 0.18 -2.1
47,194 + MPMX19_04660 0.18 +1.7
47,194 + MPMX19_04660 0.18 +0.5
47,194 + MPMX19_04660 0.18 -1.9
47,195 - MPMX19_04660 0.18 -2.7
47,195 - MPMX19_04660 0.18 +1.0
47,195 - MPMX19_04660 0.18 -0.3
47,195 - MPMX19_04660 0.18 +0.5
47,195 - MPMX19_04660 0.18 +0.1
47,195 - MPMX19_04660 0.18 -0.7
47,195 - MPMX19_04660 0.18 -2.1
47,195 - MPMX19_04660 0.18 -0.0
47,195 - MPMX19_04660 0.18 -0.8
47,503 + MPMX19_04660 0.59 +0.3
47,503 + MPMX19_04660 0.59 +1.4
47,503 + MPMX19_04660 0.59 -0.0
47,504 - MPMX19_04660 0.59 +0.7
47,567 + MPMX19_04660 0.68 +0.5
47,567 + MPMX19_04660 0.68 +0.9
47,858 - -2.4

Or see this region's nucleotide sequence