Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04483

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04482 and MPMX19_04483 are separated by 43 nucleotidesMPMX19_04483 and MPMX19_04484 are separated by 105 nucleotidesMPMX19_04484 and MPMX19_04485 are separated by 33 nucleotides MPMX19_04482: MPMX19_04482 - HTH-type transcriptional regulator DegA, at 849,659 to 850,759 _04482 MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837 _04483 MPMX19_04484: MPMX19_04484 - 2-iminobutanoate/2-iminopropanoate deaminase, at 851,943 to 852,287 _04484 MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121 _04485 Position (kb) 850 851 852Strain fitness (log2 ratio) -2 -1 0 1at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.101 kb on + strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.102 kb on - strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.203 kb on + strand, within MPMX19_04482at 850.204 kb on - strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.341 kb on + strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.342 kb on - strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.347 kb on + strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.348 kb on - strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.374 kb on + strand, within MPMX19_04482at 850.509 kb on + strand, within MPMX19_04482at 850.510 kb on - strand, within MPMX19_04482at 851.044 kb on + strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.045 kb on - strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.173 kb on + strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.174 kb on - strand, within MPMX19_04483at 851.299 kb on + strand, within MPMX19_04483at 851.299 kb on + strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.300 kb on - strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.740 kb on + strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.743 kb on + strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.821 kb on + strandat 851.822 kb on - strandat 851.822 kb on - strandat 851.944 kb on + strandat 851.944 kb on + strandat 851.944 kb on + strandat 851.945 kb on - strandat 851.945 kb on - strandat 851.945 kb on - strandat 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.322 kb on + strandat 852.322 kb on + strandat 852.322 kb on + strandat 852.322 kb on + strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.398 kb on - strandat 852.398 kb on - strandat 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.575 kb on - strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.734 kb on - strand, within MPMX19_04485at 852.734 kb on - strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.758 kb on - strand, within MPMX19_04485at 852.758 kb on - strand, within MPMX19_04485

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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850,101 + MPMX19_04482 0.40 -0.2
850,101 + MPMX19_04482 0.40 +1.5
850,101 + MPMX19_04482 0.40 +0.7
850,101 + MPMX19_04482 0.40 -0.3
850,101 + MPMX19_04482 0.40 +0.1
850,102 - MPMX19_04482 0.40 +0.9
850,102 - MPMX19_04482 0.40 -1.3
850,102 - MPMX19_04482 0.40 +0.6
850,102 - MPMX19_04482 0.40 -1.0
850,102 - MPMX19_04482 0.40 +0.8
850,203 + MPMX19_04482 0.49 -1.7
850,203 + MPMX19_04482 0.49 -1.1
850,203 + MPMX19_04482 0.49 +0.9
850,204 - MPMX19_04482 0.50 +0.2
850,341 + MPMX19_04482 0.62 +0.7
850,341 + MPMX19_04482 0.62 +0.9
850,341 + MPMX19_04482 0.62 -1.5
850,342 - MPMX19_04482 0.62 +0.9
850,342 - MPMX19_04482 0.62 -0.0
850,342 - MPMX19_04482 0.62 -1.3
850,342 - MPMX19_04482 0.62 -1.7
850,347 + MPMX19_04482 0.62 -0.7
850,347 + MPMX19_04482 0.62 -0.8
850,347 + MPMX19_04482 0.62 +1.2
850,347 + MPMX19_04482 0.62 +1.0
850,348 - MPMX19_04482 0.63 -0.8
850,348 - MPMX19_04482 0.63 -1.7
850,374 + MPMX19_04482 0.65 +0.3
850,374 + MPMX19_04482 0.65 +0.7
850,374 + MPMX19_04482 0.65 -1.9
850,509 + MPMX19_04482 0.77 -0.3
850,510 - MPMX19_04482 0.77 -0.3
851,044 + MPMX19_04483 0.23 +0.7
851,045 - MPMX19_04483 0.23 -1.5
851,045 - MPMX19_04483 0.23 +0.6
851,045 - MPMX19_04483 0.23 -0.3
851,045 - MPMX19_04483 0.23 -0.1
851,173 + MPMX19_04483 0.36 -0.6
851,173 + MPMX19_04483 0.36 -0.3
851,173 + MPMX19_04483 0.36 -2.4
851,173 + MPMX19_04483 0.36 -0.5
851,174 - MPMX19_04483 0.36 +0.9
851,174 - MPMX19_04483 0.36 -1.7
851,174 - MPMX19_04483 0.36 -0.1
851,174 - MPMX19_04483 0.36 +0.7
851,299 + MPMX19_04483 0.48 +0.6
851,299 + MPMX19_04483 0.48 +1.2
851,300 - MPMX19_04483 0.48 -2.2
851,300 - MPMX19_04483 0.48 -0.5
851,300 - MPMX19_04483 0.48 -0.5
851,300 - MPMX19_04483 0.48 -0.3
851,656 + MPMX19_04483 0.82 -1.6
851,656 + MPMX19_04483 0.82 +1.4
851,656 + MPMX19_04483 0.82 -1.7
851,656 + MPMX19_04483 0.82 -0.8
851,656 + MPMX19_04483 0.82 -0.3
851,657 - MPMX19_04483 0.83 +0.4
851,657 - MPMX19_04483 0.83 -1.0
851,740 + -1.8
851,741 - -0.2
851,741 - -0.7
851,741 - -0.5
851,741 - +0.6
851,743 + -1.7
851,744 - +0.2
851,744 - +0.5
851,744 - -0.5
851,744 - -0.8
851,821 + -0.1
851,822 - -0.5
851,822 - -0.9
851,944 + +0.0
851,944 + +0.5
851,944 + +0.1
851,945 - +0.2
851,945 - +0.8
851,945 - -1.0
852,049 + MPMX19_04484 0.31 +0.3
852,049 + MPMX19_04484 0.31 +1.5
852,049 + MPMX19_04484 0.31 -1.5
852,049 + MPMX19_04484 0.31 -0.4
852,049 + MPMX19_04484 0.31 -0.7
852,049 + MPMX19_04484 0.31 -0.6
852,049 + MPMX19_04484 0.31 -2.7
852,049 + MPMX19_04484 0.31 +0.1
852,049 + MPMX19_04484 0.31 -1.5
852,049 + MPMX19_04484 0.31 -1.8
852,050 - MPMX19_04484 0.31 +0.3
852,050 - MPMX19_04484 0.31 +0.1
852,050 - MPMX19_04484 0.31 -0.0
852,050 - MPMX19_04484 0.31 -0.5
852,050 - MPMX19_04484 0.31 +0.5
852,050 - MPMX19_04484 0.31 -0.6
852,050 - MPMX19_04484 0.31 -0.1
852,050 - MPMX19_04484 0.31 +1.1
852,050 - MPMX19_04484 0.31 -1.9
852,050 - MPMX19_04484 0.31 -0.0
852,050 - MPMX19_04484 0.31 -2.3
852,322 + +0.8
852,322 + +0.2
852,322 + -0.7
852,322 + +1.7
852,323 - +0.5
852,323 - -0.1
852,323 - -1.5
852,323 - +0.9
852,398 - +0.6
852,398 - -1.5
852,574 + MPMX19_04485 0.32 +0.1
852,574 + MPMX19_04485 0.32 +0.7
852,574 + MPMX19_04485 0.32 -0.4
852,574 + MPMX19_04485 0.32 -0.1
852,575 - MPMX19_04485 0.32 -0.5
852,733 + MPMX19_04485 0.51 -1.9
852,733 + MPMX19_04485 0.51 -1.1
852,733 + MPMX19_04485 0.51 -1.1
852,733 + MPMX19_04485 0.51 +0.9
852,733 + MPMX19_04485 0.51 +1.7
852,734 - MPMX19_04485 0.52 -0.0
852,734 - MPMX19_04485 0.52 +0.7
852,757 + MPMX19_04485 0.54 -0.2
852,757 + MPMX19_04485 0.54 -2.0
852,757 + MPMX19_04485 0.54 +1.4
852,757 + MPMX19_04485 0.54 -0.1
852,757 + MPMX19_04485 0.54 -0.8
852,758 - MPMX19_04485 0.55 -0.7
852,758 - MPMX19_04485 0.55 -0.9

Or see this region's nucleotide sequence