Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04195

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04193 and MPMX19_04194 are separated by 19 nucleotidesMPMX19_04194 and MPMX19_04195 are separated by 614 nucleotidesMPMX19_04195 and MPMX19_04196 are separated by 62 nucleotides MPMX19_04193: MPMX19_04193 - hypothetical protein, at 526,887 to 527,288 _04193 MPMX19_04194: MPMX19_04194 - hypothetical protein, at 527,308 to 527,652 _04194 MPMX19_04195: MPMX19_04195 - Sensor histidine kinase RcsC, at 528,267 to 530,489 _04195 MPMX19_04196: MPMX19_04196 - hypothetical protein, at 530,552 to 531,847 _04196 Position (kb) 528 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 527.371 kb on + strand, within MPMX19_04194at 527.756 kb on - strandat 527.756 kb on - strandat 527.760 kb on - strandat 527.760 kb on - strandat 527.760 kb on - strandat 527.764 kb on + strandat 527.764 kb on + strandat 527.764 kb on + strandat 527.826 kb on + strandat 527.827 kb on - strandat 527.895 kb on - strandat 527.919 kb on - strandat 527.919 kb on - strandat 527.925 kb on + strandat 527.926 kb on - strandat 527.955 kb on + strandat 527.955 kb on + strandat 527.956 kb on - strandat 527.998 kb on + strandat 527.998 kb on + strandat 527.999 kb on - strandat 527.999 kb on - strandat 527.999 kb on - strandat 527.999 kb on - strandat 528.029 kb on + strandat 528.029 kb on + strandat 528.029 kb on + strandat 528.030 kb on - strandat 528.030 kb on - strandat 528.030 kb on - strandat 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.570 kb on + strand, within MPMX19_04195at 528.571 kb on - strand, within MPMX19_04195at 528.571 kb on - strand, within MPMX19_04195at 528.571 kb on - strand, within MPMX19_04195at 528.571 kb on - strand, within MPMX19_04195at 528.828 kb on + strand, within MPMX19_04195at 528.828 kb on + strand, within MPMX19_04195at 528.828 kb on + strand, within MPMX19_04195at 528.828 kb on + strand, within MPMX19_04195at 528.829 kb on - strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.029 kb on + strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.030 kb on - strand, within MPMX19_04195at 529.052 kb on + strand, within MPMX19_04195at 529.052 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.240 kb on + strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.241 kb on - strand, within MPMX19_04195at 529.352 kb on + strand, within MPMX19_04195at 529.352 kb on + strand, within MPMX19_04195at 529.352 kb on + strand, within MPMX19_04195at 529.352 kb on + strand, within MPMX19_04195at 529.353 kb on - strand, within MPMX19_04195at 529.353 kb on - strand, within MPMX19_04195at 529.353 kb on - strand, within MPMX19_04195at 529.353 kb on - strand, within MPMX19_04195at 529.353 kb on - strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.732 kb on + strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 529.733 kb on - strand, within MPMX19_04195at 530.085 kb on + strand, within MPMX19_04195at 530.085 kb on + strand, within MPMX19_04195at 530.086 kb on - strand, within MPMX19_04195at 530.242 kb on + strand, within MPMX19_04195at 530.242 kb on + strand, within MPMX19_04195at 530.242 kb on + strand, within MPMX19_04195at 530.242 kb on + strand, within MPMX19_04195at 530.242 kb on + strand, within MPMX19_04195at 530.243 kb on - strand, within MPMX19_04195at 530.243 kb on - strand, within MPMX19_04195at 530.243 kb on - strand, within MPMX19_04195at 530.243 kb on - strand, within MPMX19_04195at 530.492 kb on + strandat 530.493 kb on - strandat 530.493 kb on - strandat 530.520 kb on + strandat 530.520 kb on + strandat 530.521 kb on - strandat 530.521 kb on - strandat 530.521 kb on - strandat 530.521 kb on - strandat 530.521 kb on - strandat 530.691 kb on + strand, within MPMX19_04196at 531.046 kb on + strand, within MPMX19_04196at 531.047 kb on - strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.316 kb on + strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.317 kb on - strand, within MPMX19_04196at 531.484 kb on - strand, within MPMX19_04196at 531.484 kb on - strand, within MPMX19_04196

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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527,371 + MPMX19_04194 0.18 +0.9
527,756 - +1.0
527,756 - +0.3
527,760 - +0.2
527,760 - -1.8
527,760 - +0.0
527,764 + -0.2
527,764 + -0.0
527,764 + -2.6
527,826 + +1.0
527,827 - -1.2
527,895 - -0.8
527,919 - -0.4
527,919 - +0.5
527,925 + +0.0
527,926 - +1.1
527,955 + -0.2
527,955 + +0.8
527,956 - -0.6
527,998 + +1.0
527,998 + -0.2
527,999 - +0.6
527,999 - -0.5
527,999 - +0.1
527,999 - -2.1
528,029 + +0.6
528,029 + -0.4
528,029 + -1.1
528,030 - +0.0
528,030 - -0.8
528,030 - +0.0
528,570 + MPMX19_04195 0.14 -0.4
528,570 + MPMX19_04195 0.14 -1.0
528,570 + MPMX19_04195 0.14 +0.0
528,570 + MPMX19_04195 0.14 -2.8
528,570 + MPMX19_04195 0.14 -2.7
528,570 + MPMX19_04195 0.14 -0.4
528,570 + MPMX19_04195 0.14 -0.2
528,570 + MPMX19_04195 0.14 -0.3
528,570 + MPMX19_04195 0.14 +0.5
528,570 + MPMX19_04195 0.14 -2.6
528,570 + MPMX19_04195 0.14 -0.2
528,571 - MPMX19_04195 0.14 -1.0
528,571 - MPMX19_04195 0.14 +0.4
528,571 - MPMX19_04195 0.14 -0.2
528,571 - MPMX19_04195 0.14 +0.9
528,828 + MPMX19_04195 0.25 -0.7
528,828 + MPMX19_04195 0.25 +1.4
528,828 + MPMX19_04195 0.25 -0.3
528,828 + MPMX19_04195 0.25 +0.4
528,829 - MPMX19_04195 0.25 -1.2
529,029 + MPMX19_04195 0.34 -1.1
529,029 + MPMX19_04195 0.34 +0.1
529,029 + MPMX19_04195 0.34 -0.8
529,029 + MPMX19_04195 0.34 +0.6
529,029 + MPMX19_04195 0.34 -1.1
529,029 + MPMX19_04195 0.34 -0.1
529,029 + MPMX19_04195 0.34 -2.0
529,029 + MPMX19_04195 0.34 -1.9
529,029 + MPMX19_04195 0.34 -0.2
529,029 + MPMX19_04195 0.34 +0.1
529,029 + MPMX19_04195 0.34 -0.2
529,029 + MPMX19_04195 0.34 -0.3
529,029 + MPMX19_04195 0.34 +0.3
529,029 + MPMX19_04195 0.34 -0.5
529,029 + MPMX19_04195 0.34 -0.6
529,029 + MPMX19_04195 0.34 -2.1
529,029 + MPMX19_04195 0.34 +1.2
529,029 + MPMX19_04195 0.34 -1.2
529,029 + MPMX19_04195 0.34 -0.9
529,029 + MPMX19_04195 0.34 -0.5
529,029 + MPMX19_04195 0.34 -1.3
529,029 + MPMX19_04195 0.34 +0.4
529,029 + MPMX19_04195 0.34 -0.4
529,030 - MPMX19_04195 0.34 -1.1
529,030 - MPMX19_04195 0.34 -0.5
529,030 - MPMX19_04195 0.34 +1.6
529,030 - MPMX19_04195 0.34 -0.4
529,030 - MPMX19_04195 0.34 -0.7
529,030 - MPMX19_04195 0.34 -1.0
529,030 - MPMX19_04195 0.34 -0.3
529,030 - MPMX19_04195 0.34 -0.5
529,030 - MPMX19_04195 0.34 -0.9
529,030 - MPMX19_04195 0.34 +0.8
529,030 - MPMX19_04195 0.34 +1.4
529,030 - MPMX19_04195 0.34 +1.3
529,030 - MPMX19_04195 0.34 -0.4
529,030 - MPMX19_04195 0.34 -0.1
529,030 - MPMX19_04195 0.34 -1.7
529,030 - MPMX19_04195 0.34 -1.0
529,030 - MPMX19_04195 0.34 +0.4
529,052 + MPMX19_04195 0.35 -0.4
529,052 + MPMX19_04195 0.35 -2.4
529,240 + MPMX19_04195 0.44 -0.7
529,240 + MPMX19_04195 0.44 +0.2
529,240 + MPMX19_04195 0.44 -0.7
529,240 + MPMX19_04195 0.44 -1.0
529,240 + MPMX19_04195 0.44 -1.0
529,240 + MPMX19_04195 0.44 +0.2
529,240 + MPMX19_04195 0.44 -0.9
529,241 - MPMX19_04195 0.44 -2.2
529,241 - MPMX19_04195 0.44 -1.7
529,241 - MPMX19_04195 0.44 -0.5
529,241 - MPMX19_04195 0.44 +0.7
529,241 - MPMX19_04195 0.44 +1.4
529,241 - MPMX19_04195 0.44 -0.0
529,241 - MPMX19_04195 0.44 +0.6
529,241 - MPMX19_04195 0.44 +0.8
529,241 - MPMX19_04195 0.44 -0.3
529,352 + MPMX19_04195 0.49 -0.5
529,352 + MPMX19_04195 0.49 -0.7
529,352 + MPMX19_04195 0.49 +1.2
529,352 + MPMX19_04195 0.49 -1.0
529,353 - MPMX19_04195 0.49 +0.2
529,353 - MPMX19_04195 0.49 +0.0
529,353 - MPMX19_04195 0.49 +1.6
529,353 - MPMX19_04195 0.49 -0.9
529,353 - MPMX19_04195 0.49 -1.1
529,732 + MPMX19_04195 0.66 +0.3
529,732 + MPMX19_04195 0.66 -0.6
529,732 + MPMX19_04195 0.66 -2.3
529,732 + MPMX19_04195 0.66 -1.1
529,732 + MPMX19_04195 0.66 -0.2
529,732 + MPMX19_04195 0.66 -2.1
529,732 + MPMX19_04195 0.66 -0.2
529,732 + MPMX19_04195 0.66 +0.4
529,732 + MPMX19_04195 0.66 +0.2
529,732 + MPMX19_04195 0.66 -0.4
529,732 + MPMX19_04195 0.66 -0.4
529,733 - MPMX19_04195 0.66 +0.2
529,733 - MPMX19_04195 0.66 +0.0
529,733 - MPMX19_04195 0.66 -0.4
529,733 - MPMX19_04195 0.66 -0.7
529,733 - MPMX19_04195 0.66 +0.3
529,733 - MPMX19_04195 0.66 -0.9
529,733 - MPMX19_04195 0.66 +1.4
529,733 - MPMX19_04195 0.66 +0.8
529,733 - MPMX19_04195 0.66 +0.3
529,733 - MPMX19_04195 0.66 +1.2
529,733 - MPMX19_04195 0.66 -0.1
529,733 - MPMX19_04195 0.66 -0.6
529,733 - MPMX19_04195 0.66 +1.6
529,733 - MPMX19_04195 0.66 +0.6
529,733 - MPMX19_04195 0.66 -1.6
530,085 + MPMX19_04195 0.82 -1.3
530,085 + MPMX19_04195 0.82 +0.0
530,086 - MPMX19_04195 0.82 -0.6
530,242 + MPMX19_04195 0.89 +0.1
530,242 + MPMX19_04195 0.89 -0.7
530,242 + MPMX19_04195 0.89 +0.4
530,242 + MPMX19_04195 0.89 -0.2
530,242 + MPMX19_04195 0.89 +0.2
530,243 - MPMX19_04195 0.89 -1.6
530,243 - MPMX19_04195 0.89 -0.4
530,243 - MPMX19_04195 0.89 +0.0
530,243 - MPMX19_04195 0.89 -0.4
530,492 + +0.4
530,493 - +0.9
530,493 - -1.8
530,520 + -1.1
530,520 + -0.9
530,521 - +0.9
530,521 - -1.8
530,521 - +0.0
530,521 - +1.1
530,521 - -0.6
530,691 + MPMX19_04196 0.11 +0.6
531,046 + MPMX19_04196 0.38 -0.0
531,047 - MPMX19_04196 0.38 -0.5
531,316 + MPMX19_04196 0.59 -1.1
531,316 + MPMX19_04196 0.59 -0.5
531,316 + MPMX19_04196 0.59 +0.2
531,316 + MPMX19_04196 0.59 +0.4
531,316 + MPMX19_04196 0.59 -1.0
531,316 + MPMX19_04196 0.59 -0.1
531,316 + MPMX19_04196 0.59 -2.4
531,316 + MPMX19_04196 0.59 +0.3
531,316 + MPMX19_04196 0.59 -0.5
531,316 + MPMX19_04196 0.59 +0.4
531,316 + MPMX19_04196 0.59 +0.3
531,316 + MPMX19_04196 0.59 -0.1
531,316 + MPMX19_04196 0.59 -0.2
531,316 + MPMX19_04196 0.59 +1.4
531,316 + MPMX19_04196 0.59 -1.4
531,317 - MPMX19_04196 0.59 -1.8
531,317 - MPMX19_04196 0.59 +0.2
531,317 - MPMX19_04196 0.59 -1.4
531,317 - MPMX19_04196 0.59 -1.0
531,317 - MPMX19_04196 0.59 +1.6
531,317 - MPMX19_04196 0.59 +2.3
531,317 - MPMX19_04196 0.59 +0.8
531,317 - MPMX19_04196 0.59 +0.4
531,317 - MPMX19_04196 0.59 -0.2
531,317 - MPMX19_04196 0.59 -0.2
531,317 - MPMX19_04196 0.59 +0.9
531,317 - MPMX19_04196 0.59 -2.5
531,317 - MPMX19_04196 0.59 -2.0
531,317 - MPMX19_04196 0.59 -1.2
531,317 - MPMX19_04196 0.59 +0.0
531,317 - MPMX19_04196 0.59 -1.4
531,317 - MPMX19_04196 0.59 -0.1
531,484 - MPMX19_04196 0.72 -0.4
531,484 - MPMX19_04196 0.72 +0.8

Or see this region's nucleotide sequence