Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03437

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03436 and MPMX19_03437 are separated by 30 nucleotidesMPMX19_03437 and MPMX19_03438 are separated by 7 nucleotidesMPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides MPMX19_03436: MPMX19_03436 - hypothetical protein, at 828,279 to 832,529 _03436 MPMX19_03437: MPMX19_03437 - hypothetical protein, at 832,560 to 833,678 _03437 MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279 _03438 MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860 _03439 Position (kb) 832 833 834Strain fitness (log2 ratio) -2 -1 0 1 2at 831.579 kb on + strand, within MPMX19_03436at 831.580 kb on - strand, within MPMX19_03436at 831.580 kb on - strand, within MPMX19_03436at 831.840 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.954 kb on + strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 831.955 kb on - strand, within MPMX19_03436at 832.031 kb on + strand, within MPMX19_03436at 832.032 kb on - strand, within MPMX19_03436at 832.524 kb on + strandat 832.524 kb on + strandat 832.525 kb on - strandat 832.525 kb on - strandat 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.115 kb on + strand, within MPMX19_03437at 833.116 kb on - strand, within MPMX19_03437at 833.116 kb on - strand, within MPMX19_03437at 833.116 kb on - strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.193 kb on + strand, within MPMX19_03437at 833.194 kb on - strand, within MPMX19_03437at 833.194 kb on - strand, within MPMX19_03437at 833.194 kb on - strand, within MPMX19_03437at 833.194 kb on - strand, within MPMX19_03437at 833.494 kb on - strand, within MPMX19_03437at 833.521 kb on - strand, within MPMX19_03437at 833.557 kb on - strand, within MPMX19_03437at 833.557 kb on - strand, within MPMX19_03437at 833.557 kb on - strand, within MPMX19_03437at 833.607 kb on + strandat 833.607 kb on + strandat 833.608 kb on - strandat 833.608 kb on - strandat 833.608 kb on - strandat 833.608 kb on - strandat 833.704 kb on + strandat 833.705 kb on - strandat 833.741 kb on - strandat 833.741 kb on - strandat 833.836 kb on + strand, within MPMX19_03438at 833.836 kb on + strand, within MPMX19_03438at 833.836 kb on + strand, within MPMX19_03438at 833.836 kb on + strand, within MPMX19_03438at 833.837 kb on - strand, within MPMX19_03438at 833.837 kb on - strand, within MPMX19_03438at 833.837 kb on - strand, within MPMX19_03438at 833.837 kb on - strand, within MPMX19_03438at 833.846 kb on - strand, within MPMX19_03438at 833.872 kb on + strand, within MPMX19_03438at 833.872 kb on + strand, within MPMX19_03438at 833.872 kb on + strand, within MPMX19_03438at 833.872 kb on + strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 833.873 kb on - strand, within MPMX19_03438at 834.013 kb on + strand, within MPMX19_03438at 834.013 kb on + strand, within MPMX19_03438at 834.013 kb on + strand, within MPMX19_03438at 834.013 kb on + strand, within MPMX19_03438at 834.013 kb on + strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.014 kb on - strand, within MPMX19_03438at 834.130 kb on + strand, within MPMX19_03438at 834.130 kb on + strand, within MPMX19_03438at 834.130 kb on + strand, within MPMX19_03438at 834.131 kb on - strand, within MPMX19_03438at 834.131 kb on - strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.211 kb on + strand, within MPMX19_03438at 834.212 kb on - strand, within MPMX19_03438at 834.212 kb on - strand, within MPMX19_03438at 834.212 kb on - strand, within MPMX19_03438at 834.220 kb on + strandat 834.220 kb on + strandat 834.221 kb on - strandat 834.221 kb on - strandat 834.221 kb on - strandat 834.221 kb on - strandat 834.290 kb on + strandat 834.290 kb on + strandat 834.290 kb on + strandat 834.290 kb on + strandat 834.290 kb on + strandat 834.291 kb on - strandat 834.291 kb on - strandat 834.291 kb on - strandat 834.291 kb on - strandat 834.291 kb on - strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.293 kb on + strandat 834.294 kb on - strandat 834.294 kb on - strandat 834.411 kb on + strand, within MPMX19_03439at 834.412 kb on - strand, within MPMX19_03439at 834.412 kb on - strand, within MPMX19_03439at 834.412 kb on - strand, within MPMX19_03439

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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831,579 + MPMX19_03436 0.78 -0.8
831,580 - MPMX19_03436 0.78 -0.5
831,580 - MPMX19_03436 0.78 -0.1
831,840 + MPMX19_03436 0.84 -0.8
831,954 + MPMX19_03436 0.86 -0.0
831,954 + MPMX19_03436 0.86 +0.6
831,954 + MPMX19_03436 0.86 -0.0
831,954 + MPMX19_03436 0.86 +2.2
831,954 + MPMX19_03436 0.86 -1.4
831,954 + MPMX19_03436 0.86 -0.7
831,954 + MPMX19_03436 0.86 +0.1
831,954 + MPMX19_03436 0.86 -0.9
831,955 - MPMX19_03436 0.86 +0.2
831,955 - MPMX19_03436 0.86 -1.0
831,955 - MPMX19_03436 0.86 +0.3
831,955 - MPMX19_03436 0.86 -0.7
831,955 - MPMX19_03436 0.86 +0.5
831,955 - MPMX19_03436 0.86 -0.1
831,955 - MPMX19_03436 0.86 -0.3
831,955 - MPMX19_03436 0.86 +0.1
832,031 + MPMX19_03436 0.88 +2.3
832,032 - MPMX19_03436 0.88 -1.9
832,524 + -0.5
832,524 + -0.1
832,525 - +1.3
832,525 - -1.3
833,115 + MPMX19_03437 0.50 -0.1
833,115 + MPMX19_03437 0.50 -0.1
833,115 + MPMX19_03437 0.50 -0.3
833,115 + MPMX19_03437 0.50 -0.9
833,115 + MPMX19_03437 0.50 +1.3
833,115 + MPMX19_03437 0.50 -1.3
833,115 + MPMX19_03437 0.50 +0.5
833,116 - MPMX19_03437 0.50 +1.2
833,116 - MPMX19_03437 0.50 -0.7
833,116 - MPMX19_03437 0.50 -1.3
833,193 + MPMX19_03437 0.57 +0.7
833,193 + MPMX19_03437 0.57 -0.8
833,193 + MPMX19_03437 0.57 +0.1
833,193 + MPMX19_03437 0.57 +0.1
833,193 + MPMX19_03437 0.57 -1.1
833,193 + MPMX19_03437 0.57 +0.8
833,193 + MPMX19_03437 0.57 -0.5
833,193 + MPMX19_03437 0.57 -0.4
833,194 - MPMX19_03437 0.57 -2.0
833,194 - MPMX19_03437 0.57 +0.3
833,194 - MPMX19_03437 0.57 -1.3
833,194 - MPMX19_03437 0.57 -0.4
833,494 - MPMX19_03437 0.83 +0.3
833,521 - MPMX19_03437 0.86 -0.2
833,557 - MPMX19_03437 0.89 -0.3
833,557 - MPMX19_03437 0.89 -0.0
833,557 - MPMX19_03437 0.89 -1.1
833,607 + +0.7
833,607 + -1.2
833,608 - -0.3
833,608 - -0.1
833,608 - -0.4
833,608 - +0.0
833,704 + -1.5
833,705 - -0.3
833,741 - -1.9
833,741 - -0.3
833,836 + MPMX19_03438 0.25 +0.3
833,836 + MPMX19_03438 0.25 -0.9
833,836 + MPMX19_03438 0.25 +0.6
833,836 + MPMX19_03438 0.25 -0.2
833,837 - MPMX19_03438 0.25 +0.5
833,837 - MPMX19_03438 0.25 -1.7
833,837 - MPMX19_03438 0.25 -0.6
833,837 - MPMX19_03438 0.25 -0.9
833,846 - MPMX19_03438 0.27 -1.7
833,872 + MPMX19_03438 0.31 -0.1
833,872 + MPMX19_03438 0.31 -1.9
833,872 + MPMX19_03438 0.31 +1.2
833,872 + MPMX19_03438 0.31 +0.5
833,873 - MPMX19_03438 0.31 -0.1
833,873 - MPMX19_03438 0.31 -0.4
833,873 - MPMX19_03438 0.31 -0.4
833,873 - MPMX19_03438 0.31 -1.1
833,873 - MPMX19_03438 0.31 -0.6
833,873 - MPMX19_03438 0.31 +0.5
833,873 - MPMX19_03438 0.31 -1.0
834,013 + MPMX19_03438 0.55 +0.0
834,013 + MPMX19_03438 0.55 +1.0
834,013 + MPMX19_03438 0.55 -0.3
834,013 + MPMX19_03438 0.55 -0.7
834,013 + MPMX19_03438 0.55 -0.7
834,014 - MPMX19_03438 0.55 +0.3
834,014 - MPMX19_03438 0.55 -0.9
834,014 - MPMX19_03438 0.55 +0.2
834,014 - MPMX19_03438 0.55 -0.3
834,014 - MPMX19_03438 0.55 -2.2
834,014 - MPMX19_03438 0.55 +0.3
834,014 - MPMX19_03438 0.55 -0.9
834,130 + MPMX19_03438 0.75 -1.5
834,130 + MPMX19_03438 0.75 +0.9
834,130 + MPMX19_03438 0.75 +0.0
834,131 - MPMX19_03438 0.75 -0.1
834,131 - MPMX19_03438 0.75 -0.4
834,211 + MPMX19_03438 0.88 -1.7
834,211 + MPMX19_03438 0.88 -2.2
834,211 + MPMX19_03438 0.88 -1.1
834,211 + MPMX19_03438 0.88 -1.9
834,211 + MPMX19_03438 0.88 +0.5
834,211 + MPMX19_03438 0.88 +1.5
834,211 + MPMX19_03438 0.88 +0.5
834,211 + MPMX19_03438 0.88 -1.9
834,211 + MPMX19_03438 0.88 +1.5
834,211 + MPMX19_03438 0.88 -1.7
834,212 - MPMX19_03438 0.89 -1.3
834,212 - MPMX19_03438 0.89 +0.1
834,212 - MPMX19_03438 0.89 -0.9
834,220 + -0.4
834,220 + -2.3
834,221 - +0.9
834,221 - -0.4
834,221 - +0.6
834,221 - -0.7
834,290 + -0.0
834,290 + +1.5
834,290 + -0.3
834,290 + +0.9
834,290 + +0.5
834,291 - -2.0
834,291 - +0.1
834,291 - -1.9
834,291 - -0.4
834,291 - -1.5
834,293 + -0.0
834,293 + +0.7
834,293 + -0.1
834,293 + -1.9
834,293 + -1.2
834,293 + -0.4
834,293 + +0.4
834,293 + -1.1
834,293 + +1.0
834,294 - +0.3
834,294 - -2.0
834,411 + MPMX19_03439 0.23 -0.4
834,412 - MPMX19_03439 0.23 -0.4
834,412 - MPMX19_03439 0.23 +1.0
834,412 - MPMX19_03439 0.23 -0.1

Or see this region's nucleotide sequence