Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03279

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03278 and MPMX19_03279 are separated by 16 nucleotidesMPMX19_03279 and MPMX19_03280 are separated by 29 nucleotidesMPMX19_03280 and MPMX19_03281 overlap by 4 nucleotides MPMX19_03278: MPMX19_03278 - hypothetical protein, at 623,896 to 624,954 _03278 MPMX19_03279: MPMX19_03279 - hypothetical protein, at 624,971 to 626,230 _03279 MPMX19_03280: MPMX19_03280 - Inner membrane ABC transporter permease protein YdcV, at 626,260 to 627,075 _03280 MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818 _03281 Position (kb) 624 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.094 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.682 kb on + strand, within MPMX19_03278at 624.683 kb on - strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.788 kb on - strand, within MPMX19_03278at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.235 kb on + strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.236 kb on - strand, within MPMX19_03279at 625.310 kb on + strand, within MPMX19_03279at 625.310 kb on + strand, within MPMX19_03279at 625.478 kb on + strand, within MPMX19_03279at 625.478 kb on + strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.479 kb on - strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.481 kb on + strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.482 kb on - strand, within MPMX19_03279at 625.517 kb on - strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.556 kb on + strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.557 kb on - strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.617 kb on + strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.618 kb on - strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.835 kb on + strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.836 kb on - strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.913 kb on + strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.914 kb on - strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.970 kb on + strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 625.971 kb on - strand, within MPMX19_03279at 626.037 kb on - strand, within MPMX19_03279at 626.037 kb on - strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.039 kb on + strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.040 kb on - strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.087 kb on + strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.088 kb on - strand, within MPMX19_03279at 626.099 kb on + strand, within MPMX19_03279at 626.099 kb on + strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.100 kb on - strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.102 kb on + strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.103 kb on - strand, within MPMX19_03279at 626.177 kb on + strandat 626.177 kb on + strandat 626.300 kb on - strandat 626.300 kb on - strandat 626.389 kb on + strand, within MPMX19_03280at 626.390 kb on - strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.419 kb on + strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.420 kb on - strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.629 kb on + strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.630 kb on - strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.665 kb on + strand, within MPMX19_03280at 626.666 kb on - strand, within MPMX19_03280at 626.666 kb on - strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.770 kb on + strand, within MPMX19_03280at 626.771 kb on - strand, within MPMX19_03280

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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624,094 + MPMX19_03278 0.19 -0.1
624,262 + MPMX19_03278 0.35 +0.2
624,262 + MPMX19_03278 0.35 +0.6
624,262 + MPMX19_03278 0.35 +0.5
624,263 - MPMX19_03278 0.35 -1.1
624,263 - MPMX19_03278 0.35 +0.0
624,263 - MPMX19_03278 0.35 -0.5
624,263 - MPMX19_03278 0.35 +0.3
624,310 + MPMX19_03278 0.39 -1.1
624,310 + MPMX19_03278 0.39 +0.8
624,310 + MPMX19_03278 0.39 -1.4
624,310 + MPMX19_03278 0.39 +1.5
624,310 + MPMX19_03278 0.39 -0.1
624,310 + MPMX19_03278 0.39 +1.5
624,310 + MPMX19_03278 0.39 -1.2
624,310 + MPMX19_03278 0.39 +0.7
624,311 - MPMX19_03278 0.39 -0.0
624,311 - MPMX19_03278 0.39 -1.9
624,682 + MPMX19_03278 0.74 -1.1
624,683 - MPMX19_03278 0.74 +0.2
624,787 + MPMX19_03278 0.84 -0.4
624,787 + MPMX19_03278 0.84 -0.3
624,787 + MPMX19_03278 0.84 +0.3
624,788 - MPMX19_03278 0.84 +2.0
625,235 + MPMX19_03279 0.21 -0.1
625,235 + MPMX19_03279 0.21 -1.3
625,235 + MPMX19_03279 0.21 -0.8
625,235 + MPMX19_03279 0.21 +0.8
625,236 - MPMX19_03279 0.21 +0.9
625,236 - MPMX19_03279 0.21 +0.9
625,236 - MPMX19_03279 0.21 -0.4
625,236 - MPMX19_03279 0.21 +0.2
625,310 + MPMX19_03279 0.27 -0.2
625,310 + MPMX19_03279 0.27 -0.7
625,478 + MPMX19_03279 0.40 +1.7
625,478 + MPMX19_03279 0.40 -0.3
625,479 - MPMX19_03279 0.40 -1.5
625,479 - MPMX19_03279 0.40 -0.8
625,479 - MPMX19_03279 0.40 +0.3
625,479 - MPMX19_03279 0.40 -0.9
625,479 - MPMX19_03279 0.40 +0.3
625,481 + MPMX19_03279 0.40 +0.1
625,481 + MPMX19_03279 0.40 +0.2
625,481 + MPMX19_03279 0.40 -1.5
625,481 + MPMX19_03279 0.40 +0.4
625,481 + MPMX19_03279 0.40 -0.8
625,481 + MPMX19_03279 0.40 -1.7
625,481 + MPMX19_03279 0.40 +0.1
625,481 + MPMX19_03279 0.40 +0.5
625,482 - MPMX19_03279 0.41 +0.5
625,482 - MPMX19_03279 0.41 +1.1
625,482 - MPMX19_03279 0.41 -0.8
625,482 - MPMX19_03279 0.41 +2.3
625,482 - MPMX19_03279 0.41 +1.8
625,517 - MPMX19_03279 0.43 +1.3
625,556 + MPMX19_03279 0.46 +0.2
625,556 + MPMX19_03279 0.46 +0.5
625,556 + MPMX19_03279 0.46 +1.3
625,556 + MPMX19_03279 0.46 -0.8
625,556 + MPMX19_03279 0.46 -0.2
625,557 - MPMX19_03279 0.47 -0.3
625,557 - MPMX19_03279 0.47 -2.3
625,557 - MPMX19_03279 0.47 +0.0
625,557 - MPMX19_03279 0.47 -0.5
625,557 - MPMX19_03279 0.47 -1.8
625,557 - MPMX19_03279 0.47 +1.2
625,557 - MPMX19_03279 0.47 +0.5
625,617 + MPMX19_03279 0.51 +0.7
625,617 + MPMX19_03279 0.51 -0.2
625,617 + MPMX19_03279 0.51 +0.2
625,617 + MPMX19_03279 0.51 +0.9
625,618 - MPMX19_03279 0.51 -0.8
625,618 - MPMX19_03279 0.51 +0.4
625,618 - MPMX19_03279 0.51 +0.3
625,835 + MPMX19_03279 0.69 -0.5
625,835 + MPMX19_03279 0.69 -0.2
625,835 + MPMX19_03279 0.69 +0.3
625,835 + MPMX19_03279 0.69 -0.7
625,836 - MPMX19_03279 0.69 +1.3
625,836 - MPMX19_03279 0.69 +0.4
625,836 - MPMX19_03279 0.69 +0.8
625,836 - MPMX19_03279 0.69 +2.3
625,836 - MPMX19_03279 0.69 -1.7
625,836 - MPMX19_03279 0.69 +0.1
625,913 + MPMX19_03279 0.75 +0.3
625,913 + MPMX19_03279 0.75 -1.1
625,913 + MPMX19_03279 0.75 -0.3
625,913 + MPMX19_03279 0.75 -0.4
625,913 + MPMX19_03279 0.75 +0.2
625,913 + MPMX19_03279 0.75 +0.6
625,913 + MPMX19_03279 0.75 +0.7
625,914 - MPMX19_03279 0.75 -0.8
625,914 - MPMX19_03279 0.75 -1.3
625,914 - MPMX19_03279 0.75 +0.3
625,914 - MPMX19_03279 0.75 -1.2
625,914 - MPMX19_03279 0.75 +0.5
625,914 - MPMX19_03279 0.75 +0.2
625,914 - MPMX19_03279 0.75 -0.6
625,914 - MPMX19_03279 0.75 -1.3
625,914 - MPMX19_03279 0.75 +0.8
625,914 - MPMX19_03279 0.75 +0.8
625,914 - MPMX19_03279 0.75 +0.8
625,914 - MPMX19_03279 0.75 +0.8
625,914 - MPMX19_03279 0.75 -0.4
625,914 - MPMX19_03279 0.75 +0.3
625,914 - MPMX19_03279 0.75 +1.5
625,914 - MPMX19_03279 0.75 +0.2
625,914 - MPMX19_03279 0.75 -0.4
625,970 + MPMX19_03279 0.79 +0.7
625,970 + MPMX19_03279 0.79 -0.1
625,970 + MPMX19_03279 0.79 -0.1
625,970 + MPMX19_03279 0.79 -0.7
625,970 + MPMX19_03279 0.79 +1.0
625,970 + MPMX19_03279 0.79 -0.7
625,970 + MPMX19_03279 0.79 +0.6
625,971 - MPMX19_03279 0.79 -0.7
625,971 - MPMX19_03279 0.79 -0.9
625,971 - MPMX19_03279 0.79 -0.2
625,971 - MPMX19_03279 0.79 +0.3
625,971 - MPMX19_03279 0.79 -0.5
625,971 - MPMX19_03279 0.79 +1.7
625,971 - MPMX19_03279 0.79 -0.2
626,037 - MPMX19_03279 0.85 +0.4
626,037 - MPMX19_03279 0.85 +1.5
626,039 + MPMX19_03279 0.85 -0.7
626,039 + MPMX19_03279 0.85 +0.7
626,039 + MPMX19_03279 0.85 -0.9
626,039 + MPMX19_03279 0.85 -0.1
626,039 + MPMX19_03279 0.85 +0.7
626,039 + MPMX19_03279 0.85 +0.1
626,039 + MPMX19_03279 0.85 -0.9
626,039 + MPMX19_03279 0.85 -0.1
626,039 + MPMX19_03279 0.85 +0.6
626,039 + MPMX19_03279 0.85 -0.8
626,039 + MPMX19_03279 0.85 +1.1
626,040 - MPMX19_03279 0.85 -1.9
626,040 - MPMX19_03279 0.85 -1.1
626,040 - MPMX19_03279 0.85 +0.3
626,040 - MPMX19_03279 0.85 -0.9
626,040 - MPMX19_03279 0.85 -2.4
626,040 - MPMX19_03279 0.85 -0.1
626,040 - MPMX19_03279 0.85 -1.3
626,040 - MPMX19_03279 0.85 +0.1
626,040 - MPMX19_03279 0.85 -2.2
626,087 + MPMX19_03279 0.89 -0.8
626,087 + MPMX19_03279 0.89 -1.7
626,087 + MPMX19_03279 0.89 -0.1
626,087 + MPMX19_03279 0.89 +0.1
626,087 + MPMX19_03279 0.89 -0.2
626,087 + MPMX19_03279 0.89 -2.1
626,087 + MPMX19_03279 0.89 +1.9
626,087 + MPMX19_03279 0.89 -0.1
626,087 + MPMX19_03279 0.89 -0.9
626,088 - MPMX19_03279 0.89 -0.8
626,088 - MPMX19_03279 0.89 +0.5
626,088 - MPMX19_03279 0.89 +0.8
626,088 - MPMX19_03279 0.89 -1.1
626,088 - MPMX19_03279 0.89 -0.3
626,088 - MPMX19_03279 0.89 -0.2
626,088 - MPMX19_03279 0.89 -0.9
626,088 - MPMX19_03279 0.89 -0.7
626,099 + MPMX19_03279 0.90 +0.5
626,099 + MPMX19_03279 0.90 -2.8
626,100 - MPMX19_03279 0.90 +0.7
626,100 - MPMX19_03279 0.90 +0.4
626,100 - MPMX19_03279 0.90 -0.1
626,102 + MPMX19_03279 0.90 +0.8
626,102 + MPMX19_03279 0.90 -0.4
626,102 + MPMX19_03279 0.90 -0.8
626,102 + MPMX19_03279 0.90 +0.3
626,103 - MPMX19_03279 0.90 +0.1
626,103 - MPMX19_03279 0.90 +0.4
626,103 - MPMX19_03279 0.90 +0.3
626,177 + +0.5
626,177 + +0.3
626,300 - -0.3
626,300 - -1.5
626,389 + MPMX19_03280 0.16 -1.6
626,390 - MPMX19_03280 0.16 -0.8
626,419 + MPMX19_03280 0.19 -0.7
626,419 + MPMX19_03280 0.19 +1.3
626,419 + MPMX19_03280 0.19 -0.1
626,419 + MPMX19_03280 0.19 -0.1
626,420 - MPMX19_03280 0.20 -0.1
626,420 - MPMX19_03280 0.20 +1.5
626,420 - MPMX19_03280 0.20 -1.1
626,420 - MPMX19_03280 0.20 -0.3
626,629 + MPMX19_03280 0.45 -1.2
626,629 + MPMX19_03280 0.45 +0.7
626,629 + MPMX19_03280 0.45 -0.1
626,629 + MPMX19_03280 0.45 -2.2
626,629 + MPMX19_03280 0.45 +1.0
626,629 + MPMX19_03280 0.45 -0.2
626,629 + MPMX19_03280 0.45 +0.1
626,629 + MPMX19_03280 0.45 +1.3
626,630 - MPMX19_03280 0.45 +0.2
626,630 - MPMX19_03280 0.45 -1.4
626,630 - MPMX19_03280 0.45 -1.8
626,630 - MPMX19_03280 0.45 -0.8
626,630 - MPMX19_03280 0.45 +0.7
626,630 - MPMX19_03280 0.45 +0.5
626,665 + MPMX19_03280 0.50 +0.3
626,665 + MPMX19_03280 0.50 -1.3
626,665 + MPMX19_03280 0.50 +0.1
626,665 + MPMX19_03280 0.50 +0.6
626,665 + MPMX19_03280 0.50 -0.6
626,666 - MPMX19_03280 0.50 -0.3
626,666 - MPMX19_03280 0.50 -1.8
626,770 + MPMX19_03280 0.62 +1.6
626,770 + MPMX19_03280 0.62 -0.6
626,770 + MPMX19_03280 0.62 -0.8
626,771 - MPMX19_03280 0.63 +0.4

Or see this region's nucleotide sequence