Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02534

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02533 and MPMX19_02534 are separated by 14 nucleotidesMPMX19_02534 and MPMX19_02535 overlap by 1 nucleotidesMPMX19_02535 and MPMX19_02536 overlap by 1 nucleotides MPMX19_02533: MPMX19_02533 - Cytochrome c-type biogenesis protein CcmF, at 2,651,406 to 2,653,412 _02533 MPMX19_02534: MPMX19_02534 - Thiol:disulfide interchange protein DsbE, at 2,653,427 to 2,653,996 _02534 MPMX19_02535: MPMX19_02535 - Cytochrome c-type biogenesis protein CcmH, at 2,653,996 to 2,654,478 _02535 MPMX19_02536: MPMX19_02536 - hypothetical protein, at 2,654,478 to 2,655,911 _02536 Position (kb) 2653 2654Strain fitness (log2 ratio) -1 0 1at 2654.803 kb on - strand, within MPMX19_02536at 2654.973 kb on + strand, within MPMX19_02536at 2654.973 kb on + strand, within MPMX19_02536

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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2,654,803 - MPMX19_02536 0.23 +1.7
2,654,973 + MPMX19_02536 0.35 +0.7
2,654,973 + MPMX19_02536 0.35 +1.7

Or see this region's nucleotide sequence