Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44090

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44085 and QEN71_RS44090 are separated by 4 nucleotidesQEN71_RS44090 and QEN71_RS44095 are separated by 2 nucleotidesQEN71_RS44095 and QEN71_RS44100 overlap by 4 nucleotides QEN71_RS44085: QEN71_RS44085 - type II secretory pathway protein, at 291,706 to 293,337 _RS44085 QEN71_RS44090: QEN71_RS44090 - toxin co-regulated pilus biosynthesis Q family protein, at 293,342 to 293,962 _RS44090 QEN71_RS44095: QEN71_RS44095 - lytic transglycosylase domain-containing protein, at 293,965 to 294,393 _RS44095 QEN71_RS44100: QEN71_RS44100 - TrbG/VirB9 family P-type conjugative transfer protein, at 294,390 to 295,667 _RS44100 Position (kb) 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.351 kb on - strand, within QEN71_RS44085at 292.351 kb on - strand, within QEN71_RS44085at 292.351 kb on - strand, within QEN71_RS44085at 292.405 kb on + strand, within QEN71_RS44085at 292.518 kb on + strand, within QEN71_RS44085at 292.656 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.663 kb on - strand, within QEN71_RS44085at 292.669 kb on - strand, within QEN71_RS44085at 292.696 kb on - strand, within QEN71_RS44085at 292.701 kb on + strand, within QEN71_RS44085at 292.702 kb on - strand, within QEN71_RS44085at 292.767 kb on + strand, within QEN71_RS44085at 292.788 kb on + strand, within QEN71_RS44085at 292.788 kb on + strand, within QEN71_RS44085at 292.789 kb on - strand, within QEN71_RS44085at 292.789 kb on - strand, within QEN71_RS44085at 292.850 kb on + strand, within QEN71_RS44085at 292.883 kb on + strand, within QEN71_RS44085at 292.883 kb on + strand, within QEN71_RS44085at 292.884 kb on - strand, within QEN71_RS44085at 292.884 kb on - strand, within QEN71_RS44085at 292.884 kb on - strand, within QEN71_RS44085at 293.129 kb on + strand, within QEN71_RS44085at 293.130 kb on - strand, within QEN71_RS44085at 293.130 kb on - strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.170 kb on + strand, within QEN71_RS44085at 293.171 kb on - strand, within QEN71_RS44085at 293.243 kb on + strandat 293.243 kb on + strandat 293.244 kb on - strandat 293.643 kb on - strand, within QEN71_RS44090at 293.681 kb on + strand, within QEN71_RS44090at 293.765 kb on + strand, within QEN71_RS44090at 293.765 kb on + strand, within QEN71_RS44090at 293.766 kb on - strand, within QEN71_RS44090at 293.807 kb on + strand, within QEN71_RS44090at 293.807 kb on + strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.808 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.872 kb on - strand, within QEN71_RS44090at 293.954 kb on + strandat 293.955 kb on - strandat 293.955 kb on - strandat 293.995 kb on - strandat 293.995 kb on - strandat 293.998 kb on - strandat 294.041 kb on + strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.042 kb on - strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.106 kb on + strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.107 kb on - strand, within QEN71_RS44095at 294.110 kb on + strand, within QEN71_RS44095at 294.111 kb on - strand, within QEN71_RS44095at 294.111 kb on - strand, within QEN71_RS44095at 294.148 kb on + strand, within QEN71_RS44095at 294.149 kb on - strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.249 kb on + strand, within QEN71_RS44095at 294.269 kb on - strand, within QEN71_RS44095at 294.269 kb on - strand, within QEN71_RS44095at 294.370 kb on + strandat 294.371 kb on - strandat 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.544 kb on + strand, within QEN71_RS44100at 294.545 kb on - strand, within QEN71_RS44100at 294.547 kb on + strand, within QEN71_RS44100at 294.547 kb on + strand, within QEN71_RS44100at 294.548 kb on - strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.628 kb on + strand, within QEN71_RS44100at 294.629 kb on - strand, within QEN71_RS44100at 294.629 kb on - strand, within QEN71_RS44100at 294.672 kb on - strand, within QEN71_RS44100at 294.692 kb on - strand, within QEN71_RS44100at 294.878 kb on + strand, within QEN71_RS44100

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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292,351 - QEN71_RS44085 0.40 -0.7
292,351 - QEN71_RS44085 0.40 +2.1
292,351 - QEN71_RS44085 0.40 -0.3
292,405 + QEN71_RS44085 0.43 +0.6
292,518 + QEN71_RS44085 0.50 -0.3
292,656 + QEN71_RS44085 0.58 -0.4
292,662 + QEN71_RS44085 0.59 +0.3
292,662 + QEN71_RS44085 0.59 -0.2
292,662 + QEN71_RS44085 0.59 -0.0
292,662 + QEN71_RS44085 0.59 -1.2
292,662 + QEN71_RS44085 0.59 +0.9
292,663 - QEN71_RS44085 0.59 +0.6
292,669 - QEN71_RS44085 0.59 -1.1
292,696 - QEN71_RS44085 0.61 +0.4
292,701 + QEN71_RS44085 0.61 -0.9
292,702 - QEN71_RS44085 0.61 +0.3
292,767 + QEN71_RS44085 0.65 -0.2
292,788 + QEN71_RS44085 0.66 +0.5
292,788 + QEN71_RS44085 0.66 +0.2
292,789 - QEN71_RS44085 0.66 -0.1
292,789 - QEN71_RS44085 0.66 +0.3
292,850 + QEN71_RS44085 0.70 +0.6
292,883 + QEN71_RS44085 0.72 +0.1
292,883 + QEN71_RS44085 0.72 -3.0
292,884 - QEN71_RS44085 0.72 -0.4
292,884 - QEN71_RS44085 0.72 -0.7
292,884 - QEN71_RS44085 0.72 +0.1
293,129 + QEN71_RS44085 0.87 -0.9
293,130 - QEN71_RS44085 0.87 +0.3
293,130 - QEN71_RS44085 0.87 +0.3
293,170 + QEN71_RS44085 0.90 +0.2
293,170 + QEN71_RS44085 0.90 -0.3
293,170 + QEN71_RS44085 0.90 -1.0
293,171 - QEN71_RS44085 0.90 -0.8
293,243 + -0.6
293,243 + -0.9
293,244 - -0.3
293,643 - QEN71_RS44090 0.48 +0.7
293,681 + QEN71_RS44090 0.55 +0.5
293,765 + QEN71_RS44090 0.68 -0.8
293,765 + QEN71_RS44090 0.68 -0.4
293,766 - QEN71_RS44090 0.68 -0.6
293,807 + QEN71_RS44090 0.75 -0.4
293,807 + QEN71_RS44090 0.75 -0.3
293,808 - QEN71_RS44090 0.75 +0.6
293,808 - QEN71_RS44090 0.75 +0.3
293,808 - QEN71_RS44090 0.75 -0.2
293,872 - QEN71_RS44090 0.85 +0.3
293,872 - QEN71_RS44090 0.85 +0.7
293,872 - QEN71_RS44090 0.85 +0.8
293,872 - QEN71_RS44090 0.85 -0.7
293,872 - QEN71_RS44090 0.85 +0.7
293,954 + -1.1
293,955 - +1.5
293,955 - -1.1
293,995 - +0.3
293,995 - +0.0
293,998 - +0.1
294,041 + QEN71_RS44095 0.18 -0.5
294,042 - QEN71_RS44095 0.18 +0.9
294,042 - QEN71_RS44095 0.18 -1.8
294,042 - QEN71_RS44095 0.18 +0.1
294,042 - QEN71_RS44095 0.18 +0.9
294,042 - QEN71_RS44095 0.18 -0.8
294,042 - QEN71_RS44095 0.18 +1.1
294,042 - QEN71_RS44095 0.18 -0.8
294,106 + QEN71_RS44095 0.33 -0.4
294,106 + QEN71_RS44095 0.33 +0.7
294,106 + QEN71_RS44095 0.33 -1.4
294,106 + QEN71_RS44095 0.33 -1.1
294,106 + QEN71_RS44095 0.33 -0.5
294,106 + QEN71_RS44095 0.33 +0.5
294,106 + QEN71_RS44095 0.33 -0.5
294,106 + QEN71_RS44095 0.33 +2.4
294,106 + QEN71_RS44095 0.33 -0.8
294,106 + QEN71_RS44095 0.33 +0.3
294,106 + QEN71_RS44095 0.33 -0.1
294,106 + QEN71_RS44095 0.33 -0.1
294,106 + QEN71_RS44095 0.33 +0.6
294,107 - QEN71_RS44095 0.33 +0.7
294,107 - QEN71_RS44095 0.33 -0.6
294,107 - QEN71_RS44095 0.33 -1.3
294,107 - QEN71_RS44095 0.33 +0.6
294,107 - QEN71_RS44095 0.33 +0.5
294,107 - QEN71_RS44095 0.33 -1.1
294,107 - QEN71_RS44095 0.33 -0.8
294,110 + QEN71_RS44095 0.34 -0.4
294,111 - QEN71_RS44095 0.34 +0.0
294,111 - QEN71_RS44095 0.34 +0.3
294,148 + QEN71_RS44095 0.43 +0.8
294,149 - QEN71_RS44095 0.43 +0.3
294,249 + QEN71_RS44095 0.66 -0.5
294,249 + QEN71_RS44095 0.66 -0.7
294,249 + QEN71_RS44095 0.66 +0.9
294,269 - QEN71_RS44095 0.71 +0.8
294,269 - QEN71_RS44095 0.71 +0.3
294,370 + +0.5
294,371 - -0.3
294,544 + QEN71_RS44100 0.12 -0.8
294,544 + QEN71_RS44100 0.12 -0.5
294,544 + QEN71_RS44100 0.12 -0.5
294,544 + QEN71_RS44100 0.12 +0.4
294,544 + QEN71_RS44100 0.12 -0.1
294,544 + QEN71_RS44100 0.12 -1.0
294,545 - QEN71_RS44100 0.12 +0.1
294,547 + QEN71_RS44100 0.12 -0.8
294,547 + QEN71_RS44100 0.12 +0.8
294,548 - QEN71_RS44100 0.12 +0.5
294,628 + QEN71_RS44100 0.19 -1.2
294,628 + QEN71_RS44100 0.19 +0.3
294,628 + QEN71_RS44100 0.19 -0.8
294,628 + QEN71_RS44100 0.19 -1.5
294,629 - QEN71_RS44100 0.19 -0.6
294,629 - QEN71_RS44100 0.19 +0.5
294,672 - QEN71_RS44100 0.22 -0.1
294,692 - QEN71_RS44100 0.24 -0.4
294,878 + QEN71_RS44100 0.38 -0.8

Or see this region's nucleotide sequence