Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38980

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38970 and QEN71_RS38975 are separated by 99 nucleotidesQEN71_RS38975 and QEN71_RS38980 are separated by 104 nucleotidesQEN71_RS38980 and QEN71_RS38985 are separated by 1 nucleotides QEN71_RS38970: QEN71_RS38970 - PLP-dependent aminotransferase family protein, at 2,120,252 to 2,121,586 _RS38970 QEN71_RS38975: QEN71_RS38975 - DJ-1/PfpI family protein, at 2,121,686 to 2,122,303 _RS38975 QEN71_RS38980: QEN71_RS38980 - hypothetical protein, at 2,122,408 to 2,122,533 _RS38980 QEN71_RS38985: QEN71_RS38985 - methyl-accepting chemotaxis protein, at 2,122,535 to 2,124,427 _RS38985 Position (kb) 2122 2123Strain fitness (log2 ratio) -1 0 1 2 3at 2121.441 kb on + strand, within QEN71_RS38970at 2121.550 kb on - strandat 2121.560 kb on + strandat 2121.561 kb on - strandat 2121.570 kb on + strandat 2121.606 kb on + strandat 2121.606 kb on + strandat 2121.606 kb on + strandat 2121.607 kb on - strandat 2121.607 kb on - strandat 2121.629 kb on + strandat 2121.629 kb on + strandat 2121.629 kb on + strandat 2121.645 kb on + strandat 2121.645 kb on + strandat 2121.692 kb on - strandat 2121.845 kb on - strand, within QEN71_RS38975at 2121.845 kb on - strand, within QEN71_RS38975at 2121.845 kb on - strand, within QEN71_RS38975at 2121.966 kb on + strand, within QEN71_RS38975at 2121.966 kb on + strand, within QEN71_RS38975at 2121.967 kb on - strand, within QEN71_RS38975at 2121.967 kb on - strand, within QEN71_RS38975at 2122.211 kb on + strand, within QEN71_RS38975at 2122.212 kb on - strand, within QEN71_RS38975at 2122.212 kb on - strand, within QEN71_RS38975at 2122.241 kb on + strand, within QEN71_RS38975at 2122.242 kb on - strandat 2122.345 kb on + strandat 2122.397 kb on + strandat 2122.455 kb on - strand, within QEN71_RS38980at 2122.543 kb on + strandat 2122.742 kb on + strand, within QEN71_RS38985at 2122.742 kb on + strand, within QEN71_RS38985at 2122.742 kb on + strand, within QEN71_RS38985at 2122.742 kb on + strand, within QEN71_RS38985at 2122.967 kb on + strand, within QEN71_RS38985at 2122.968 kb on - strand, within QEN71_RS38985at 2122.992 kb on - strand, within QEN71_RS38985at 2123.039 kb on + strand, within QEN71_RS38985at 2123.071 kb on + strand, within QEN71_RS38985at 2123.192 kb on + strand, within QEN71_RS38985at 2123.360 kb on + strand, within QEN71_RS38985at 2123.363 kb on - strand, within QEN71_RS38985at 2123.387 kb on + strand, within QEN71_RS38985at 2123.388 kb on - strand, within QEN71_RS38985

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,121,441 + QEN71_RS38970 0.89 -0.5
2,121,550 - +0.0
2,121,560 + -0.0
2,121,561 - +0.4
2,121,570 + -1.1
2,121,606 + +0.3
2,121,606 + +0.4
2,121,606 + -0.8
2,121,607 - -0.4
2,121,607 - +0.2
2,121,629 + +0.2
2,121,629 + +0.4
2,121,629 + +0.6
2,121,645 + +0.4
2,121,645 + -0.3
2,121,692 - +2.2
2,121,845 - QEN71_RS38975 0.26 +0.2
2,121,845 - QEN71_RS38975 0.26 -0.1
2,121,845 - QEN71_RS38975 0.26 -0.2
2,121,966 + QEN71_RS38975 0.45 +0.4
2,121,966 + QEN71_RS38975 0.45 -0.5
2,121,967 - QEN71_RS38975 0.45 +0.3
2,121,967 - QEN71_RS38975 0.45 -0.3
2,122,211 + QEN71_RS38975 0.85 +0.4
2,122,212 - QEN71_RS38975 0.85 +0.2
2,122,212 - QEN71_RS38975 0.85 -0.2
2,122,241 + QEN71_RS38975 0.90 +0.2
2,122,242 - -0.0
2,122,345 + +1.9
2,122,397 + -1.0
2,122,455 - QEN71_RS38980 0.37 -1.7
2,122,543 + -0.0
2,122,742 + QEN71_RS38985 0.11 +0.2
2,122,742 + QEN71_RS38985 0.11 -1.5
2,122,742 + QEN71_RS38985 0.11 -1.2
2,122,742 + QEN71_RS38985 0.11 -0.2
2,122,967 + QEN71_RS38985 0.23 +0.5
2,122,968 - QEN71_RS38985 0.23 -0.3
2,122,992 - QEN71_RS38985 0.24 -0.7
2,123,039 + QEN71_RS38985 0.27 -0.8
2,123,071 + QEN71_RS38985 0.28 +0.1
2,123,192 + QEN71_RS38985 0.35 -0.1
2,123,360 + QEN71_RS38985 0.44 +3.1
2,123,363 - QEN71_RS38985 0.44 -0.5
2,123,387 + QEN71_RS38985 0.45 -0.3
2,123,388 - QEN71_RS38985 0.45 +0.2

Or see this region's nucleotide sequence