Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38565 and QEN71_RS38570 are separated by 80 nucleotides QEN71_RS38570 and QEN71_RS38575 are separated by 182 nucleotides QEN71_RS38575 and QEN71_RS38580 are separated by 49 nucleotides
QEN71_RS38565: QEN71_RS38565 - LysR family transcriptional regulator, at 2,036,711 to 2,037,634
_RS38565
QEN71_RS38570: QEN71_RS38570 - TetR/AcrR family transcriptional regulator, at 2,037,715 to 2,038,278
_RS38570
QEN71_RS38575: QEN71_RS38575 - organic hydroperoxide resistance protein, at 2,038,461 to 2,038,886
_RS38575
QEN71_RS38580: QEN71_RS38580 - alpha/beta hydrolase, at 2,038,936 to 2,039,964
_RS38580
Position (kb)
2037
2038
2039 Strain fitness (log2 ratio)
-2
-1
0
1 at 2037.005 kb on - strand, within QEN71_RS38565 at 2037.042 kb on + strand, within QEN71_RS38565 at 2037.102 kb on - strand, within QEN71_RS38565 at 2037.264 kb on - strand, within QEN71_RS38565 at 2037.295 kb on - strand, within QEN71_RS38565 at 2037.359 kb on + strand, within QEN71_RS38565 at 2037.429 kb on + strand, within QEN71_RS38565 at 2037.561 kb on - strand at 2037.561 kb on - strand at 2037.563 kb on + strand at 2037.563 kb on + strand at 2037.564 kb on - strand at 2037.574 kb on + strand at 2037.574 kb on + strand at 2037.575 kb on - strand at 2037.633 kb on - strand at 2037.964 kb on + strand, within QEN71_RS38570 at 2038.193 kb on - strand, within QEN71_RS38570 at 2038.277 kb on - strand at 2038.282 kb on + strand at 2038.282 kb on + strand at 2038.283 kb on - strand at 2038.894 kb on - strand at 2038.905 kb on + strand at 2039.088 kb on + strand, within QEN71_RS38580
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,037,005 - QEN71_RS38565 0.32 -0.0 2,037,042 + QEN71_RS38565 0.36 -1.0 2,037,102 - QEN71_RS38565 0.42 -1.0 2,037,264 - QEN71_RS38565 0.60 -0.6 2,037,295 - QEN71_RS38565 0.63 -0.2 2,037,359 + QEN71_RS38565 0.70 +0.4 2,037,429 + QEN71_RS38565 0.78 -0.2 2,037,561 - +0.6 2,037,561 - +0.4 2,037,563 + -0.1 2,037,563 + -0.4 2,037,564 - -0.1 2,037,574 + -0.5 2,037,574 + -1.3 2,037,575 - +0.1 2,037,633 - +0.6 2,037,964 + QEN71_RS38570 0.44 -2.1 2,038,193 - QEN71_RS38570 0.85 -1.4 2,038,277 - -0.6 2,038,282 + +0.1 2,038,282 + +1.3 2,038,283 - +0.3 2,038,894 - +0.6 2,038,905 + -1.0 2,039,088 + QEN71_RS38580 0.15 +0.3
Or see this region's nucleotide sequence