Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36810

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36800 and QEN71_RS36805 are separated by 41 nucleotidesQEN71_RS36805 and QEN71_RS36810 are separated by 15 nucleotidesQEN71_RS36810 and QEN71_RS36815 are separated by 245 nucleotides QEN71_RS36800: QEN71_RS36800 - type III secretion inner membrane ring lipoprotein SctJ, at 1,635,815 to 1,636,573 _RS36800 QEN71_RS36805: QEN71_RS36805 - type III secretion protein, at 1,636,615 to 1,637,007 _RS36805 QEN71_RS36810: QEN71_RS36810 - HrpB1 family type III secretion system apparatus protein, at 1,637,023 to 1,637,616 _RS36810 QEN71_RS36815: QEN71_RS36815 - type III secretion system export apparatus subunit SctU, at 1,637,862 to 1,638,950 _RS36815 Position (kb) 1637 1638Strain fitness (log2 ratio) -1 0 1at 1636.064 kb on + strand, within QEN71_RS36800at 1636.064 kb on + strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800at 1636.129 kb on - strand, within QEN71_RS36800at 1636.266 kb on + strand, within QEN71_RS36800at 1636.517 kb on - strandat 1637.001 kb on + strandat 1637.002 kb on - strandat 1637.082 kb on + strandat 1637.082 kb on + strandat 1637.082 kb on + strandat 1637.298 kb on - strand, within QEN71_RS36810at 1637.304 kb on - strand, within QEN71_RS36810at 1637.318 kb on + strand, within QEN71_RS36810at 1637.670 kb on + strandat 1637.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,636,064 + QEN71_RS36800 0.33 -1.2
1,636,064 + QEN71_RS36800 0.33 -0.4
1,636,065 - QEN71_RS36800 0.33 -0.4
1,636,065 - QEN71_RS36800 0.33 -0.5
1,636,065 - QEN71_RS36800 0.33 -0.8
1,636,129 - QEN71_RS36800 0.41 -1.4
1,636,266 + QEN71_RS36800 0.59 +0.4
1,636,517 - -1.0
1,637,001 + -0.1
1,637,002 - -0.2
1,637,082 + -0.2
1,637,082 + -0.2
1,637,082 + +0.0
1,637,298 - QEN71_RS36810 0.46 +0.0
1,637,304 - QEN71_RS36810 0.47 -0.1
1,637,318 + QEN71_RS36810 0.50 -0.3
1,637,670 + -0.7
1,637,671 - +1.3

Or see this region's nucleotide sequence