Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35220

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35215 and QEN71_RS35220 are separated by 14 nucleotides QEN71_RS35215: QEN71_RS35215 - flagellar hook-associated protein FlgK, at 1,249,263 to 1,251,248 _RS35215 QEN71_RS35220: QEN71_RS35220 - hypothetical protein, at 1,251,263 to 1,251,589 _RS35220 Position (kb) 1251 1252Strain fitness (log2 ratio) -1 0 1at 1250.364 kb on + strand, within QEN71_RS35215at 1250.365 kb on - strand, within QEN71_RS35215at 1250.365 kb on - strand, within QEN71_RS35215at 1250.379 kb on + strand, within QEN71_RS35215at 1250.380 kb on - strand, within QEN71_RS35215at 1250.510 kb on + strand, within QEN71_RS35215at 1250.563 kb on + strand, within QEN71_RS35215at 1250.563 kb on + strand, within QEN71_RS35215at 1250.683 kb on - strand, within QEN71_RS35215at 1250.772 kb on + strand, within QEN71_RS35215at 1250.772 kb on + strand, within QEN71_RS35215at 1250.773 kb on - strand, within QEN71_RS35215at 1250.805 kb on + strand, within QEN71_RS35215at 1250.806 kb on - strand, within QEN71_RS35215at 1251.016 kb on - strand, within QEN71_RS35215at 1251.016 kb on - strand, within QEN71_RS35215at 1251.024 kb on + strand, within QEN71_RS35215at 1251.025 kb on - strand, within QEN71_RS35215at 1251.025 kb on - strand, within QEN71_RS35215at 1251.025 kb on - strand, within QEN71_RS35215at 1251.251 kb on + strandat 1251.262 kb on + strandat 1251.262 kb on + strandat 1251.262 kb on + strandat 1251.554 kb on + strand, within QEN71_RS35220at 1251.555 kb on - strand, within QEN71_RS35220at 1251.555 kb on - strand, within QEN71_RS35220at 1251.881 kb on - strandat 1252.000 kb on + strandat 1252.000 kb on + strandat 1252.001 kb on - strandat 1252.086 kb on + strandat 1252.086 kb on + strandat 1252.087 kb on - strandat 1252.306 kb on + strandat 1252.348 kb on + strandat 1252.348 kb on + strandat 1252.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,250,364 + QEN71_RS35215 0.55 -1.4
1,250,365 - QEN71_RS35215 0.55 -0.4
1,250,365 - QEN71_RS35215 0.55 -0.8
1,250,379 + QEN71_RS35215 0.56 +0.1
1,250,380 - QEN71_RS35215 0.56 -0.1
1,250,510 + QEN71_RS35215 0.63 -0.2
1,250,563 + QEN71_RS35215 0.65 +0.3
1,250,563 + QEN71_RS35215 0.65 +1.1
1,250,683 - QEN71_RS35215 0.72 -0.2
1,250,772 + QEN71_RS35215 0.76 -0.9
1,250,772 + QEN71_RS35215 0.76 +0.5
1,250,773 - QEN71_RS35215 0.76 -0.3
1,250,805 + QEN71_RS35215 0.78 +0.1
1,250,806 - QEN71_RS35215 0.78 -0.3
1,251,016 - QEN71_RS35215 0.88 +0.1
1,251,016 - QEN71_RS35215 0.88 -0.9
1,251,024 + QEN71_RS35215 0.89 -1.7
1,251,025 - QEN71_RS35215 0.89 +0.7
1,251,025 - QEN71_RS35215 0.89 +0.5
1,251,025 - QEN71_RS35215 0.89 +0.6
1,251,251 + +0.7
1,251,262 + -0.2
1,251,262 + -0.1
1,251,262 + +0.1
1,251,554 + QEN71_RS35220 0.89 -1.0
1,251,555 - QEN71_RS35220 0.89 -1.5
1,251,555 - QEN71_RS35220 0.89 -0.9
1,251,881 - -0.8
1,252,000 + -0.5
1,252,000 + +0.4
1,252,001 - +0.2
1,252,086 + +1.4
1,252,086 + +0.3
1,252,087 - -1.5
1,252,306 + +0.2
1,252,348 + -0.6
1,252,348 + -0.4
1,252,382 + +0.7

Or see this region's nucleotide sequence