Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24110

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS24100 and QEN71_RS24105 are separated by 18 nucleotidesQEN71_RS24105 and QEN71_RS24110 are separated by 174 nucleotidesQEN71_RS24110 and QEN71_RS24115 are separated by 14 nucleotides QEN71_RS24100: QEN71_RS24100 - NADH-quinone oxidoreductase subunit NuoK, at 5,364,379 to 5,364,684 _RS24100 QEN71_RS24105: QEN71_RS24105 - NADH-quinone oxidoreductase subunit J, at 5,364,703 to 5,365,371 _RS24105 QEN71_RS24110: QEN71_RS24110 - NADH-quinone oxidoreductase subunit NuoI, at 5,365,546 to 5,366,034 _RS24110 QEN71_RS24115: QEN71_RS24115 - NADH-quinone oxidoreductase subunit NuoH, at 5,366,049 to 5,367,113 _RS24115 Position (kb) 5365 5366 5367Strain fitness (log2 ratio) -1 0 1at 5364.685 kb on - strandat 5364.685 kb on - strandat 5365.536 kb on - strandat 5365.548 kb on - strandat 5366.051 kb on - strandat 5366.051 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
5,364,685 - -0.0
5,364,685 - -1.2
5,365,536 - -0.9
5,365,548 - -1.0
5,366,051 - -0.0
5,366,051 - +0.7

Or see this region's nucleotide sequence