Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18680

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18675 and QEN71_RS18680 are separated by 88 nucleotidesQEN71_RS18680 and QEN71_RS18685 are separated by 52 nucleotides QEN71_RS18675: QEN71_RS18675 - quinone oxidoreductase, at 4,156,403 to 4,157,383 _RS18675 QEN71_RS18680: QEN71_RS18680 - acetoacetate--CoA ligase, at 4,157,472 to 4,159,484 _RS18680 QEN71_RS18685: QEN71_RS18685 - MFS transporter, at 4,159,537 to 4,160,877 _RS18685 Position (kb) 4157 4158 4159 4160Strain fitness (log2 ratio) -2 -1 0 1at 4156.779 kb on - strand, within QEN71_RS18675at 4156.806 kb on + strand, within QEN71_RS18675at 4156.807 kb on - strand, within QEN71_RS18675at 4156.807 kb on - strand, within QEN71_RS18675at 4156.807 kb on - strand, within QEN71_RS18675at 4156.974 kb on + strand, within QEN71_RS18675at 4156.992 kb on + strand, within QEN71_RS18675at 4156.992 kb on + strand, within QEN71_RS18675at 4157.126 kb on - strand, within QEN71_RS18675at 4157.127 kb on + strand, within QEN71_RS18675at 4157.159 kb on + strand, within QEN71_RS18675at 4157.160 kb on - strand, within QEN71_RS18675at 4157.172 kb on - strand, within QEN71_RS18675at 4157.556 kb on + strandat 4157.765 kb on - strand, within QEN71_RS18680at 4157.962 kb on + strand, within QEN71_RS18680at 4157.962 kb on + strand, within QEN71_RS18680at 4157.962 kb on + strand, within QEN71_RS18680at 4157.962 kb on + strand, within QEN71_RS18680at 4157.962 kb on + strand, within QEN71_RS18680at 4157.963 kb on - strand, within QEN71_RS18680at 4157.963 kb on - strand, within QEN71_RS18680at 4157.963 kb on - strand, within QEN71_RS18680at 4157.963 kb on - strand, within QEN71_RS18680at 4157.975 kb on - strand, within QEN71_RS18680at 4158.069 kb on + strand, within QEN71_RS18680at 4158.070 kb on - strand, within QEN71_RS18680at 4158.070 kb on - strand, within QEN71_RS18680at 4158.142 kb on + strand, within QEN71_RS18680at 4158.143 kb on - strand, within QEN71_RS18680at 4158.150 kb on + strand, within QEN71_RS18680at 4158.247 kb on + strand, within QEN71_RS18680at 4158.292 kb on - strand, within QEN71_RS18680at 4158.350 kb on - strand, within QEN71_RS18680at 4158.350 kb on - strand, within QEN71_RS18680at 4158.352 kb on + strand, within QEN71_RS18680at 4158.706 kb on - strand, within QEN71_RS18680at 4158.720 kb on + strand, within QEN71_RS18680at 4158.721 kb on - strand, within QEN71_RS18680at 4158.759 kb on + strand, within QEN71_RS18680at 4158.998 kb on + strand, within QEN71_RS18680at 4158.998 kb on + strand, within QEN71_RS18680at 4159.010 kb on - strand, within QEN71_RS18680at 4159.180 kb on + strand, within QEN71_RS18680at 4159.180 kb on + strand, within QEN71_RS18680at 4159.180 kb on + strand, within QEN71_RS18680at 4159.180 kb on + strand, within QEN71_RS18680at 4159.180 kb on + strand, within QEN71_RS18680at 4159.181 kb on - strand, within QEN71_RS18680at 4159.181 kb on - strand, within QEN71_RS18680at 4159.181 kb on - strand, within QEN71_RS18680at 4159.336 kb on + strandat 4159.336 kb on + strandat 4159.506 kb on + strandat 4159.510 kb on + strandat 4159.510 kb on + strandat 4159.510 kb on + strandat 4159.511 kb on - strandat 4159.511 kb on - strandat 4159.619 kb on + strandat 4159.619 kb on + strandat 4159.619 kb on + strandat 4159.724 kb on - strand, within QEN71_RS18685at 4159.920 kb on + strand, within QEN71_RS18685at 4159.921 kb on - strand, within QEN71_RS18685at 4159.921 kb on - strand, within QEN71_RS18685at 4160.042 kb on - strand, within QEN71_RS18685at 4160.103 kb on - strand, within QEN71_RS18685at 4160.103 kb on - strand, within QEN71_RS18685at 4160.173 kb on + strand, within QEN71_RS18685at 4160.173 kb on + strand, within QEN71_RS18685at 4160.174 kb on - strand, within QEN71_RS18685at 4160.200 kb on + strand, within QEN71_RS18685at 4160.201 kb on - strand, within QEN71_RS18685at 4160.273 kb on + strand, within QEN71_RS18685at 4160.291 kb on + strand, within QEN71_RS18685at 4160.292 kb on - strand, within QEN71_RS18685

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,156,779 - QEN71_RS18675 0.38 +0.3
4,156,806 + QEN71_RS18675 0.41 -1.3
4,156,807 - QEN71_RS18675 0.41 +0.5
4,156,807 - QEN71_RS18675 0.41 -1.2
4,156,807 - QEN71_RS18675 0.41 -0.5
4,156,974 + QEN71_RS18675 0.58 +0.2
4,156,992 + QEN71_RS18675 0.60 +0.6
4,156,992 + QEN71_RS18675 0.60 +0.4
4,157,126 - QEN71_RS18675 0.74 +0.1
4,157,127 + QEN71_RS18675 0.74 -0.6
4,157,159 + QEN71_RS18675 0.77 +0.5
4,157,160 - QEN71_RS18675 0.77 -1.3
4,157,172 - QEN71_RS18675 0.78 -0.2
4,157,556 + -0.3
4,157,765 - QEN71_RS18680 0.15 +0.7
4,157,962 + QEN71_RS18680 0.24 -1.0
4,157,962 + QEN71_RS18680 0.24 +0.4
4,157,962 + QEN71_RS18680 0.24 +0.3
4,157,962 + QEN71_RS18680 0.24 +0.1
4,157,962 + QEN71_RS18680 0.24 -0.2
4,157,963 - QEN71_RS18680 0.24 -0.5
4,157,963 - QEN71_RS18680 0.24 -0.8
4,157,963 - QEN71_RS18680 0.24 -1.0
4,157,963 - QEN71_RS18680 0.24 +0.4
4,157,975 - QEN71_RS18680 0.25 -0.7
4,158,069 + QEN71_RS18680 0.30 +0.5
4,158,070 - QEN71_RS18680 0.30 +0.6
4,158,070 - QEN71_RS18680 0.30 -1.1
4,158,142 + QEN71_RS18680 0.33 -0.0
4,158,143 - QEN71_RS18680 0.33 +1.1
4,158,150 + QEN71_RS18680 0.34 -0.5
4,158,247 + QEN71_RS18680 0.38 -1.3
4,158,292 - QEN71_RS18680 0.41 +0.4
4,158,350 - QEN71_RS18680 0.44 +0.3
4,158,350 - QEN71_RS18680 0.44 +0.3
4,158,352 + QEN71_RS18680 0.44 -0.1
4,158,706 - QEN71_RS18680 0.61 -0.5
4,158,720 + QEN71_RS18680 0.62 -0.3
4,158,721 - QEN71_RS18680 0.62 +0.1
4,158,759 + QEN71_RS18680 0.64 +0.3
4,158,998 + QEN71_RS18680 0.76 -0.1
4,158,998 + QEN71_RS18680 0.76 +1.7
4,159,010 - QEN71_RS18680 0.76 -0.6
4,159,180 + QEN71_RS18680 0.85 +1.1
4,159,180 + QEN71_RS18680 0.85 -1.6
4,159,180 + QEN71_RS18680 0.85 -0.3
4,159,180 + QEN71_RS18680 0.85 +0.4
4,159,180 + QEN71_RS18680 0.85 -1.0
4,159,181 - QEN71_RS18680 0.85 -1.0
4,159,181 - QEN71_RS18680 0.85 -0.3
4,159,181 - QEN71_RS18680 0.85 -0.6
4,159,336 + +0.1
4,159,336 + -1.2
4,159,506 + +1.1
4,159,510 + +0.1
4,159,510 + -1.8
4,159,510 + -0.9
4,159,511 - -0.0
4,159,511 - +0.5
4,159,619 + -0.0
4,159,619 + +0.2
4,159,619 + -0.5
4,159,724 - QEN71_RS18685 0.14 +1.5
4,159,920 + QEN71_RS18685 0.29 -1.5
4,159,921 - QEN71_RS18685 0.29 +1.1
4,159,921 - QEN71_RS18685 0.29 -0.1
4,160,042 - QEN71_RS18685 0.38 +0.1
4,160,103 - QEN71_RS18685 0.42 -0.0
4,160,103 - QEN71_RS18685 0.42 -0.6
4,160,173 + QEN71_RS18685 0.47 +0.4
4,160,173 + QEN71_RS18685 0.47 -0.0
4,160,174 - QEN71_RS18685 0.48 -0.4
4,160,200 + QEN71_RS18685 0.49 +0.4
4,160,201 - QEN71_RS18685 0.50 +0.0
4,160,273 + QEN71_RS18685 0.55 +0.3
4,160,291 + QEN71_RS18685 0.56 -1.3
4,160,292 - QEN71_RS18685 0.56 -0.0

Or see this region's nucleotide sequence