Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18425

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18415 and QEN71_RS18420 are separated by 10 nucleotidesQEN71_RS18420 and QEN71_RS18425 overlap by 4 nucleotidesQEN71_RS18425 and QEN71_RS18430 are separated by 93 nucleotides QEN71_RS18415: QEN71_RS18415 - formate dehydrogenase-N subunit alpha, at 4,101,318 to 4,104,389 _RS18415 QEN71_RS18420: QEN71_RS18420 - formate dehydrogenase subunit beta, at 4,104,400 to 4,105,338 _RS18420 QEN71_RS18425: QEN71_RS18425 - formate dehydrogenase subunit gamma, at 4,105,335 to 4,105,970 _RS18425 QEN71_RS18430: QEN71_RS18430 - formate dehydrogenase accessory protein FdhE, at 4,106,064 to 4,106,996 _RS18430 Position (kb) 4105 4106Strain fitness (log2 ratio) -2 -1 0 1 2at 4104.592 kb on + strand, within QEN71_RS18420at 4104.593 kb on - strand, within QEN71_RS18420at 4104.593 kb on - strand, within QEN71_RS18420at 4104.593 kb on - strand, within QEN71_RS18420at 4104.641 kb on - strand, within QEN71_RS18420at 4104.649 kb on + strand, within QEN71_RS18420at 4104.761 kb on - strand, within QEN71_RS18420at 4104.812 kb on - strand, within QEN71_RS18420at 4104.871 kb on + strand, within QEN71_RS18420at 4104.872 kb on - strand, within QEN71_RS18420at 4104.872 kb on - strand, within QEN71_RS18420at 4104.872 kb on - strand, within QEN71_RS18420at 4104.872 kb on - strand, within QEN71_RS18420at 4105.039 kb on + strand, within QEN71_RS18420at 4105.040 kb on - strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.075 kb on + strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.076 kb on - strand, within QEN71_RS18420at 4105.108 kb on + strand, within QEN71_RS18420at 4105.226 kb on - strand, within QEN71_RS18420at 4105.377 kb on + strandat 4105.378 kb on - strandat 4105.587 kb on + strand, within QEN71_RS18425at 4105.587 kb on + strand, within QEN71_RS18425at 4105.588 kb on - strand, within QEN71_RS18425at 4105.588 kb on - strand, within QEN71_RS18425at 4105.588 kb on - strand, within QEN71_RS18425at 4105.588 kb on - strand, within QEN71_RS18425at 4105.674 kb on + strand, within QEN71_RS18425at 4105.674 kb on + strand, within QEN71_RS18425at 4105.675 kb on - strand, within QEN71_RS18425at 4105.675 kb on - strand, within QEN71_RS18425at 4105.714 kb on + strand, within QEN71_RS18425at 4105.714 kb on + strand, within QEN71_RS18425at 4105.714 kb on + strand, within QEN71_RS18425at 4105.714 kb on + strand, within QEN71_RS18425at 4105.715 kb on - strand, within QEN71_RS18425at 4105.715 kb on - strand, within QEN71_RS18425at 4105.715 kb on - strand, within QEN71_RS18425at 4105.774 kb on - strand, within QEN71_RS18425at 4105.774 kb on - strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.856 kb on + strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.857 kb on - strand, within QEN71_RS18425at 4105.860 kb on + strand, within QEN71_RS18425at 4105.861 kb on - strand, within QEN71_RS18425at 4105.861 kb on - strand, within QEN71_RS18425at 4105.861 kb on - strand, within QEN71_RS18425at 4106.023 kb on - strandat 4106.023 kb on - strandat 4106.211 kb on + strand, within QEN71_RS18430at 4106.212 kb on - strand, within QEN71_RS18430at 4106.324 kb on + strand, within QEN71_RS18430at 4106.325 kb on - strand, within QEN71_RS18430at 4106.360 kb on - strand, within QEN71_RS18430at 4106.694 kb on + strand, within QEN71_RS18430at 4106.724 kb on + strand, within QEN71_RS18430at 4106.779 kb on - strand, within QEN71_RS18430at 4106.779 kb on - strand, within QEN71_RS18430at 4106.841 kb on + strand, within QEN71_RS18430at 4106.857 kb on - strand, within QEN71_RS18430at 4106.871 kb on + strand, within QEN71_RS18430at 4106.872 kb on - strand, within QEN71_RS18430

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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4,104,592 + QEN71_RS18420 0.20 -0.3
4,104,593 - QEN71_RS18420 0.21 +0.2
4,104,593 - QEN71_RS18420 0.21 -1.3
4,104,593 - QEN71_RS18420 0.21 -1.3
4,104,641 - QEN71_RS18420 0.26 +0.6
4,104,649 + QEN71_RS18420 0.27 -0.7
4,104,761 - QEN71_RS18420 0.38 +1.9
4,104,812 - QEN71_RS18420 0.44 -0.8
4,104,871 + QEN71_RS18420 0.50 +0.2
4,104,872 - QEN71_RS18420 0.50 -0.8
4,104,872 - QEN71_RS18420 0.50 +0.3
4,104,872 - QEN71_RS18420 0.50 -0.7
4,104,872 - QEN71_RS18420 0.50 -0.5
4,105,039 + QEN71_RS18420 0.68 -0.0
4,105,040 - QEN71_RS18420 0.68 -1.1
4,105,075 + QEN71_RS18420 0.72 +0.6
4,105,075 + QEN71_RS18420 0.72 +0.0
4,105,075 + QEN71_RS18420 0.72 -0.3
4,105,075 + QEN71_RS18420 0.72 +0.1
4,105,075 + QEN71_RS18420 0.72 -0.2
4,105,075 + QEN71_RS18420 0.72 -0.4
4,105,076 - QEN71_RS18420 0.72 +0.3
4,105,076 - QEN71_RS18420 0.72 -1.8
4,105,076 - QEN71_RS18420 0.72 -0.1
4,105,076 - QEN71_RS18420 0.72 -0.7
4,105,076 - QEN71_RS18420 0.72 -0.4
4,105,076 - QEN71_RS18420 0.72 -0.5
4,105,076 - QEN71_RS18420 0.72 -0.4
4,105,076 - QEN71_RS18420 0.72 -0.2
4,105,076 - QEN71_RS18420 0.72 +0.6
4,105,076 - QEN71_RS18420 0.72 -0.1
4,105,108 + QEN71_RS18420 0.75 +0.1
4,105,226 - QEN71_RS18420 0.88 -1.6
4,105,377 + +0.1
4,105,378 - +1.2
4,105,587 + QEN71_RS18425 0.40 +0.4
4,105,587 + QEN71_RS18425 0.40 -0.1
4,105,588 - QEN71_RS18425 0.40 -0.1
4,105,588 - QEN71_RS18425 0.40 +0.8
4,105,588 - QEN71_RS18425 0.40 -0.0
4,105,588 - QEN71_RS18425 0.40 -0.0
4,105,674 + QEN71_RS18425 0.53 -0.1
4,105,674 + QEN71_RS18425 0.53 -0.1
4,105,675 - QEN71_RS18425 0.53 +0.3
4,105,675 - QEN71_RS18425 0.53 +0.4
4,105,714 + QEN71_RS18425 0.60 -0.6
4,105,714 + QEN71_RS18425 0.60 +0.4
4,105,714 + QEN71_RS18425 0.60 -1.1
4,105,714 + QEN71_RS18425 0.60 +0.6
4,105,715 - QEN71_RS18425 0.60 -0.1
4,105,715 - QEN71_RS18425 0.60 -1.7
4,105,715 - QEN71_RS18425 0.60 -0.3
4,105,774 - QEN71_RS18425 0.69 +0.2
4,105,774 - QEN71_RS18425 0.69 +1.4
4,105,856 + QEN71_RS18425 0.82 -0.8
4,105,856 + QEN71_RS18425 0.82 -2.4
4,105,856 + QEN71_RS18425 0.82 +0.8
4,105,856 + QEN71_RS18425 0.82 +0.3
4,105,856 + QEN71_RS18425 0.82 +0.3
4,105,856 + QEN71_RS18425 0.82 -0.2
4,105,857 - QEN71_RS18425 0.82 +0.9
4,105,857 - QEN71_RS18425 0.82 +0.2
4,105,857 - QEN71_RS18425 0.82 +0.3
4,105,857 - QEN71_RS18425 0.82 -0.2
4,105,857 - QEN71_RS18425 0.82 +0.2
4,105,857 - QEN71_RS18425 0.82 -0.0
4,105,857 - QEN71_RS18425 0.82 +0.5
4,105,860 + QEN71_RS18425 0.83 -0.6
4,105,861 - QEN71_RS18425 0.83 +0.5
4,105,861 - QEN71_RS18425 0.83 -0.2
4,105,861 - QEN71_RS18425 0.83 +0.2
4,106,023 - +0.0
4,106,023 - +0.5
4,106,211 + QEN71_RS18430 0.16 -0.2
4,106,212 - QEN71_RS18430 0.16 +0.6
4,106,324 + QEN71_RS18430 0.28 -0.1
4,106,325 - QEN71_RS18430 0.28 +0.8
4,106,360 - QEN71_RS18430 0.32 -0.5
4,106,694 + QEN71_RS18430 0.68 -1.8
4,106,724 + QEN71_RS18430 0.71 +0.1
4,106,779 - QEN71_RS18430 0.77 +0.1
4,106,779 - QEN71_RS18430 0.77 -0.1
4,106,841 + QEN71_RS18430 0.83 +0.3
4,106,857 - QEN71_RS18430 0.85 +0.7
4,106,871 + QEN71_RS18430 0.86 -2.1
4,106,872 - QEN71_RS18430 0.87 +0.2

Or see this region's nucleotide sequence