Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15785

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15780 and QEN71_RS15785 are separated by 49 nucleotidesQEN71_RS15785 and QEN71_RS15790 are separated by 64 nucleotides QEN71_RS15780: QEN71_RS15780 - TonB-dependent siderophore receptor, at 3,506,461 to 3,508,683 _RS15780 QEN71_RS15785: QEN71_RS15785 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 3,508,733 to 3,510,133 _RS15785 QEN71_RS15790: QEN71_RS15790 - GNAT family N-acetyltransferase, at 3,510,198 to 3,511,223 _RS15790 Position (kb) 3508 3509 3510 3511Strain fitness (log2 ratio) -1 0 1at 3507.764 kb on + strand, within QEN71_RS15780at 3507.846 kb on + strand, within QEN71_RS15780at 3507.858 kb on - strand, within QEN71_RS15780at 3508.144 kb on + strand, within QEN71_RS15780at 3508.144 kb on + strand, within QEN71_RS15780at 3508.332 kb on - strand, within QEN71_RS15780at 3508.604 kb on + strandat 3508.686 kb on - strandat 3509.218 kb on - strand, within QEN71_RS15785at 3509.266 kb on - strand, within QEN71_RS15785at 3509.322 kb on + strand, within QEN71_RS15785at 3509.454 kb on - strand, within QEN71_RS15785at 3509.553 kb on + strand, within QEN71_RS15785at 3509.553 kb on + strand, within QEN71_RS15785at 3509.829 kb on + strand, within QEN71_RS15785at 3509.829 kb on + strand, within QEN71_RS15785at 3509.880 kb on + strand, within QEN71_RS15785at 3509.880 kb on + strand, within QEN71_RS15785at 3509.881 kb on - strand, within QEN71_RS15785at 3510.164 kb on - strandat 3510.382 kb on + strand, within QEN71_RS15790at 3510.382 kb on + strand, within QEN71_RS15790at 3510.383 kb on - strand, within QEN71_RS15790at 3510.517 kb on + strand, within QEN71_RS15790at 3510.518 kb on - strand, within QEN71_RS15790at 3510.573 kb on - strand, within QEN71_RS15790at 3510.573 kb on - strand, within QEN71_RS15790at 3510.769 kb on + strand, within QEN71_RS15790

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,507,764 + QEN71_RS15780 0.59 +0.3
3,507,846 + QEN71_RS15780 0.62 +0.3
3,507,858 - QEN71_RS15780 0.63 -0.2
3,508,144 + QEN71_RS15780 0.76 -0.7
3,508,144 + QEN71_RS15780 0.76 +0.9
3,508,332 - QEN71_RS15780 0.84 -0.9
3,508,604 + -0.2
3,508,686 - -0.5
3,509,218 - QEN71_RS15785 0.35 +0.7
3,509,266 - QEN71_RS15785 0.38 +0.3
3,509,322 + QEN71_RS15785 0.42 +0.2
3,509,454 - QEN71_RS15785 0.51 +1.5
3,509,553 + QEN71_RS15785 0.59 -1.3
3,509,553 + QEN71_RS15785 0.59 -0.4
3,509,829 + QEN71_RS15785 0.78 +1.4
3,509,829 + QEN71_RS15785 0.78 +0.2
3,509,880 + QEN71_RS15785 0.82 -0.1
3,509,880 + QEN71_RS15785 0.82 +0.3
3,509,881 - QEN71_RS15785 0.82 +0.6
3,510,164 - +0.2
3,510,382 + QEN71_RS15790 0.18 -0.1
3,510,382 + QEN71_RS15790 0.18 -0.0
3,510,383 - QEN71_RS15790 0.18 -0.6
3,510,517 + QEN71_RS15790 0.31 +0.5
3,510,518 - QEN71_RS15790 0.31 -1.0
3,510,573 - QEN71_RS15790 0.37 -0.3
3,510,573 - QEN71_RS15790 0.37 -0.1
3,510,769 + QEN71_RS15790 0.56 +0.9

Or see this region's nucleotide sequence