Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13845

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS13840 and QEN71_RS13845 are separated by 21 nucleotidesQEN71_RS13845 and QEN71_RS13850 are separated by 75 nucleotides QEN71_RS13840: QEN71_RS13840 - helix-turn-helix domain-containing protein, at 3,089,615 to 3,090,550 _RS13840 QEN71_RS13845: QEN71_RS13845 - ATP-grasp fold amidoligase family protein, at 3,090,572 to 3,091,582 _RS13845 QEN71_RS13850: QEN71_RS13850 - hypothetical protein, at 3,091,658 to 3,093,211 _RS13850 Position (kb) 3090 3091 3092Strain fitness (log2 ratio) -2 -1 0 1at 3089.614 kb on + strandat 3089.946 kb on + strand, within QEN71_RS13840at 3090.043 kb on + strand, within QEN71_RS13840at 3090.174 kb on - strand, within QEN71_RS13840at 3090.174 kb on - strand, within QEN71_RS13840at 3090.176 kb on - strand, within QEN71_RS13840at 3090.176 kb on - strand, within QEN71_RS13840at 3090.545 kb on + strandat 3090.549 kb on - strandat 3090.873 kb on + strand, within QEN71_RS13845at 3090.906 kb on - strand, within QEN71_RS13845at 3090.906 kb on - strand, within QEN71_RS13845at 3091.026 kb on + strand, within QEN71_RS13845at 3091.199 kb on - strand, within QEN71_RS13845at 3091.199 kb on - strand, within QEN71_RS13845at 3091.256 kb on + strand, within QEN71_RS13845at 3091.256 kb on + strand, within QEN71_RS13845at 3091.327 kb on + strand, within QEN71_RS13845at 3091.328 kb on - strand, within QEN71_RS13845at 3091.436 kb on + strand, within QEN71_RS13845at 3091.437 kb on - strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.440 kb on + strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.441 kb on - strand, within QEN71_RS13845at 3091.455 kb on - strand, within QEN71_RS13845at 3091.476 kb on - strand, within QEN71_RS13845at 3091.564 kb on + strandat 3091.624 kb on + strandat 3091.625 kb on - strandat 3091.626 kb on + strandat 3091.627 kb on - strandat 3091.740 kb on + strandat 3091.740 kb on + strandat 3091.741 kb on - strandat 3091.741 kb on - strandat 3091.741 kb on - strandat 3091.770 kb on + strandat 3091.770 kb on + strandat 3091.770 kb on + strandat 3091.771 kb on - strandat 3091.810 kb on - strandat 3091.810 kb on - strandat 3091.813 kb on - strandat 3091.836 kb on + strand, within QEN71_RS13850at 3091.836 kb on + strand, within QEN71_RS13850at 3091.880 kb on + strand, within QEN71_RS13850at 3091.920 kb on + strand, within QEN71_RS13850at 3091.980 kb on + strand, within QEN71_RS13850at 3091.990 kb on - strand, within QEN71_RS13850at 3091.990 kb on - strand, within QEN71_RS13850at 3092.271 kb on + strand, within QEN71_RS13850at 3092.272 kb on - strand, within QEN71_RS13850at 3092.287 kb on - strand, within QEN71_RS13850at 3092.287 kb on - strand, within QEN71_RS13850at 3092.337 kb on + strand, within QEN71_RS13850at 3092.337 kb on + strand, within QEN71_RS13850at 3092.338 kb on - strand, within QEN71_RS13850at 3092.338 kb on - strand, within QEN71_RS13850at 3092.379 kb on + strand, within QEN71_RS13850at 3092.380 kb on - strand, within QEN71_RS13850at 3092.540 kb on - strand, within QEN71_RS13850at 3092.541 kb on + strand, within QEN71_RS13850at 3092.541 kb on + strand, within QEN71_RS13850at 3092.541 kb on + strand, within QEN71_RS13850at 3092.541 kb on + strand, within QEN71_RS13850at 3092.542 kb on - strand, within QEN71_RS13850at 3092.542 kb on - strand, within QEN71_RS13850at 3092.542 kb on - strand, within QEN71_RS13850at 3092.542 kb on - strand, within QEN71_RS13850at 3092.542 kb on - strand, within QEN71_RS13850at 3092.545 kb on + strand, within QEN71_RS13850at 3092.545 kb on + strand, within QEN71_RS13850at 3092.545 kb on + strand, within QEN71_RS13850at 3092.545 kb on + strand, within QEN71_RS13850at 3092.545 kb on + strand, within QEN71_RS13850at 3092.546 kb on - strand, within QEN71_RS13850at 3092.546 kb on - strand, within QEN71_RS13850at 3092.546 kb on - strand, within QEN71_RS13850at 3092.546 kb on - strand, within QEN71_RS13850at 3092.548 kb on - strand, within QEN71_RS13850at 3092.553 kb on + strand, within QEN71_RS13850at 3092.553 kb on + strand, within QEN71_RS13850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
3,089,614 + -1.0
3,089,946 + QEN71_RS13840 0.35 +1.6
3,090,043 + QEN71_RS13840 0.46 +0.1
3,090,174 - QEN71_RS13840 0.60 -1.1
3,090,174 - QEN71_RS13840 0.60 +0.7
3,090,176 - QEN71_RS13840 0.60 +0.6
3,090,176 - QEN71_RS13840 0.60 -1.4
3,090,545 + +1.4
3,090,549 - -0.7
3,090,873 + QEN71_RS13845 0.30 -1.6
3,090,906 - QEN71_RS13845 0.33 +0.6
3,090,906 - QEN71_RS13845 0.33 -1.6
3,091,026 + QEN71_RS13845 0.45 -0.3
3,091,199 - QEN71_RS13845 0.62 -0.6
3,091,199 - QEN71_RS13845 0.62 +1.0
3,091,256 + QEN71_RS13845 0.68 -0.3
3,091,256 + QEN71_RS13845 0.68 +1.6
3,091,327 + QEN71_RS13845 0.75 +0.6
3,091,328 - QEN71_RS13845 0.75 +0.3
3,091,436 + QEN71_RS13845 0.85 -2.1
3,091,437 - QEN71_RS13845 0.86 -0.5
3,091,440 + QEN71_RS13845 0.86 +0.2
3,091,440 + QEN71_RS13845 0.86 +0.2
3,091,440 + QEN71_RS13845 0.86 +0.6
3,091,440 + QEN71_RS13845 0.86 -0.9
3,091,440 + QEN71_RS13845 0.86 +0.3
3,091,441 - QEN71_RS13845 0.86 -0.4
3,091,441 - QEN71_RS13845 0.86 +0.4
3,091,441 - QEN71_RS13845 0.86 -0.0
3,091,441 - QEN71_RS13845 0.86 -0.3
3,091,441 - QEN71_RS13845 0.86 -0.1
3,091,441 - QEN71_RS13845 0.86 +0.1
3,091,441 - QEN71_RS13845 0.86 +0.1
3,091,441 - QEN71_RS13845 0.86 -0.8
3,091,441 - QEN71_RS13845 0.86 +0.5
3,091,441 - QEN71_RS13845 0.86 -2.0
3,091,441 - QEN71_RS13845 0.86 +0.6
3,091,455 - QEN71_RS13845 0.87 -0.3
3,091,476 - QEN71_RS13845 0.89 -0.4
3,091,564 + -0.9
3,091,624 + -0.8
3,091,625 - -2.0
3,091,626 + -0.4
3,091,627 - -0.8
3,091,740 + -0.4
3,091,740 + -1.3
3,091,741 - -2.6
3,091,741 - +0.3
3,091,741 - -0.7
3,091,770 + +0.2
3,091,770 + -0.3
3,091,770 + -0.0
3,091,771 - -0.4
3,091,810 - -0.7
3,091,810 - +0.6
3,091,813 - +0.6
3,091,836 + QEN71_RS13850 0.11 +0.8
3,091,836 + QEN71_RS13850 0.11 -0.5
3,091,880 + QEN71_RS13850 0.14 -0.1
3,091,920 + QEN71_RS13850 0.17 -1.1
3,091,980 + QEN71_RS13850 0.21 +0.4
3,091,990 - QEN71_RS13850 0.21 -0.6
3,091,990 - QEN71_RS13850 0.21 +0.7
3,092,271 + QEN71_RS13850 0.39 +0.3
3,092,272 - QEN71_RS13850 0.40 +0.5
3,092,287 - QEN71_RS13850 0.40 -0.0
3,092,287 - QEN71_RS13850 0.40 +0.6
3,092,337 + QEN71_RS13850 0.44 -0.4
3,092,337 + QEN71_RS13850 0.44 -0.3
3,092,338 - QEN71_RS13850 0.44 +0.6
3,092,338 - QEN71_RS13850 0.44 -0.3
3,092,379 + QEN71_RS13850 0.46 -0.2
3,092,380 - QEN71_RS13850 0.46 +0.2
3,092,540 - QEN71_RS13850 0.57 -0.3
3,092,541 + QEN71_RS13850 0.57 -0.1
3,092,541 + QEN71_RS13850 0.57 +1.3
3,092,541 + QEN71_RS13850 0.57 +0.3
3,092,541 + QEN71_RS13850 0.57 -0.5
3,092,542 - QEN71_RS13850 0.57 -0.0
3,092,542 - QEN71_RS13850 0.57 -1.3
3,092,542 - QEN71_RS13850 0.57 -0.5
3,092,542 - QEN71_RS13850 0.57 +0.5
3,092,542 - QEN71_RS13850 0.57 +0.4
3,092,545 + QEN71_RS13850 0.57 +0.1
3,092,545 + QEN71_RS13850 0.57 -0.4
3,092,545 + QEN71_RS13850 0.57 -0.6
3,092,545 + QEN71_RS13850 0.57 +0.4
3,092,545 + QEN71_RS13850 0.57 -0.2
3,092,546 - QEN71_RS13850 0.57 -0.5
3,092,546 - QEN71_RS13850 0.57 +0.3
3,092,546 - QEN71_RS13850 0.57 -0.1
3,092,546 - QEN71_RS13850 0.57 -0.2
3,092,548 - QEN71_RS13850 0.57 -0.4
3,092,553 + QEN71_RS13850 0.58 +0.6
3,092,553 + QEN71_RS13850 0.58 -0.5

Or see this region's nucleotide sequence