Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10955

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10945 and QEN71_RS10950 are separated by 57 nucleotidesQEN71_RS10950 and QEN71_RS10955 are separated by 86 nucleotidesQEN71_RS10955 and QEN71_RS10960 are separated by 99 nucleotidesQEN71_RS10960 and QEN71_RS10965 are separated by 325 nucleotides QEN71_RS10945: QEN71_RS10945 - MFS transporter, at 2,435,206 to 2,436,684 _RS10945 QEN71_RS10950: QEN71_RS10950 - TetR/AcrR family transcriptional regulator, at 2,436,742 to 2,437,374 _RS10950 QEN71_RS10955: QEN71_RS10955 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 2,437,461 to 2,438,297 _RS10955 QEN71_RS10960: QEN71_RS10960 - OsmC family protein, at 2,438,397 to 2,438,822 _RS10960 QEN71_RS10965: QEN71_RS10965 - DUF4148 domain-containing protein, at 2,439,148 to 2,439,441 _RS10965 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -2 -1 0 1 2at 2436.551 kb on + strandat 2436.551 kb on + strandat 2436.551 kb on + strandat 2436.552 kb on - strandat 2436.552 kb on - strandat 2436.552 kb on - strandat 2436.552 kb on - strandat 2436.552 kb on - strandat 2436.586 kb on + strandat 2436.586 kb on + strandat 2436.586 kb on + strandat 2436.587 kb on - strandat 2436.587 kb on - strandat 2436.587 kb on - strandat 2436.587 kb on - strandat 2436.737 kb on - strandat 2437.181 kb on + strand, within QEN71_RS10950at 2437.182 kb on - strand, within QEN71_RS10950at 2437.336 kb on + strandat 2437.336 kb on + strandat 2437.337 kb on - strandat 2437.419 kb on - strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.528 kb on + strandat 2437.529 kb on - strandat 2437.529 kb on - strandat 2437.529 kb on - strandat 2437.529 kb on - strandat 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.608 kb on + strand, within QEN71_RS10955at 2437.609 kb on - strand, within QEN71_RS10955at 2437.750 kb on + strand, within QEN71_RS10955at 2437.750 kb on + strand, within QEN71_RS10955at 2437.751 kb on - strand, within QEN71_RS10955at 2437.751 kb on - strand, within QEN71_RS10955at 2437.828 kb on + strand, within QEN71_RS10955at 2437.828 kb on + strand, within QEN71_RS10955at 2437.828 kb on + strand, within QEN71_RS10955at 2437.829 kb on - strand, within QEN71_RS10955at 2437.829 kb on - strand, within QEN71_RS10955at 2437.829 kb on - strand, within QEN71_RS10955at 2437.829 kb on - strand, within QEN71_RS10955at 2437.971 kb on + strand, within QEN71_RS10955at 2437.971 kb on + strand, within QEN71_RS10955at 2437.971 kb on + strand, within QEN71_RS10955at 2438.149 kb on + strand, within QEN71_RS10955at 2438.149 kb on + strand, within QEN71_RS10955at 2438.149 kb on + strand, within QEN71_RS10955at 2438.150 kb on - strand, within QEN71_RS10955at 2438.150 kb on - strand, within QEN71_RS10955at 2438.279 kb on + strandat 2438.279 kb on + strandat 2438.279 kb on + strandat 2438.280 kb on - strandat 2438.280 kb on - strandat 2438.280 kb on - strandat 2438.280 kb on - strandat 2438.728 kb on + strand, within QEN71_RS10960at 2438.729 kb on - strand, within QEN71_RS10960at 2438.729 kb on - strand, within QEN71_RS10960at 2438.729 kb on - strand, within QEN71_RS10960at 2438.946 kb on - strandat 2438.946 kb on - strandat 2438.969 kb on + strandat 2438.969 kb on + strandat 2438.969 kb on + strandat 2438.969 kb on + strandat 2438.970 kb on - strandat 2439.015 kb on + strandat 2439.015 kb on + strandat 2439.015 kb on + strandat 2439.016 kb on - strandat 2439.016 kb on - strandat 2439.016 kb on - strandat 2439.077 kb on + strandat 2439.077 kb on + strandat 2439.077 kb on + strandat 2439.077 kb on + strandat 2439.077 kb on + strandat 2439.078 kb on - strandat 2439.078 kb on - strandat 2439.078 kb on - strandat 2439.124 kb on + strandat 2439.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,436,551 + +1.1
2,436,551 + -1.2
2,436,551 + -2.0
2,436,552 - -0.3
2,436,552 - +1.8
2,436,552 - -0.7
2,436,552 - +1.1
2,436,552 - -0.0
2,436,586 + -1.0
2,436,586 + -1.3
2,436,586 + -0.8
2,436,587 - -0.3
2,436,587 - -0.2
2,436,587 - -0.5
2,436,587 - -0.2
2,436,737 - -0.1
2,437,181 + QEN71_RS10950 0.69 -0.5
2,437,182 - QEN71_RS10950 0.70 -0.8
2,437,336 + -0.4
2,437,336 + -1.3
2,437,337 - -0.5
2,437,419 - -0.2
2,437,528 + +2.5
2,437,528 + -2.3
2,437,528 + -0.0
2,437,528 + -0.7
2,437,528 + +0.3
2,437,528 + -0.5
2,437,528 + -1.8
2,437,529 - -0.4
2,437,529 - -0.7
2,437,529 - -0.3
2,437,529 - +0.4
2,437,608 + QEN71_RS10955 0.18 -0.6
2,437,608 + QEN71_RS10955 0.18 -1.5
2,437,608 + QEN71_RS10955 0.18 +0.2
2,437,608 + QEN71_RS10955 0.18 -0.6
2,437,608 + QEN71_RS10955 0.18 +0.3
2,437,608 + QEN71_RS10955 0.18 +1.1
2,437,608 + QEN71_RS10955 0.18 -0.2
2,437,609 - QEN71_RS10955 0.18 +0.6
2,437,750 + QEN71_RS10955 0.35 -0.2
2,437,750 + QEN71_RS10955 0.35 -0.2
2,437,751 - QEN71_RS10955 0.35 -0.0
2,437,751 - QEN71_RS10955 0.35 -0.3
2,437,828 + QEN71_RS10955 0.44 +0.1
2,437,828 + QEN71_RS10955 0.44 -1.2
2,437,828 + QEN71_RS10955 0.44 -1.1
2,437,829 - QEN71_RS10955 0.44 +1.2
2,437,829 - QEN71_RS10955 0.44 -1.7
2,437,829 - QEN71_RS10955 0.44 -0.6
2,437,829 - QEN71_RS10955 0.44 -0.0
2,437,971 + QEN71_RS10955 0.61 +1.8
2,437,971 + QEN71_RS10955 0.61 +0.6
2,437,971 + QEN71_RS10955 0.61 +0.1
2,438,149 + QEN71_RS10955 0.82 -0.8
2,438,149 + QEN71_RS10955 0.82 -0.9
2,438,149 + QEN71_RS10955 0.82 +0.5
2,438,150 - QEN71_RS10955 0.82 +1.1
2,438,150 - QEN71_RS10955 0.82 -0.6
2,438,279 + +0.9
2,438,279 + +0.7
2,438,279 + -0.3
2,438,280 - -0.0
2,438,280 - +0.1
2,438,280 - +0.3
2,438,280 - +0.1
2,438,728 + QEN71_RS10960 0.78 -1.1
2,438,729 - QEN71_RS10960 0.78 -0.5
2,438,729 - QEN71_RS10960 0.78 -0.7
2,438,729 - QEN71_RS10960 0.78 +0.4
2,438,946 - -0.7
2,438,946 - +1.2
2,438,969 + +0.4
2,438,969 + -0.0
2,438,969 + -1.0
2,438,969 + +0.9
2,438,970 - +0.5
2,439,015 + +0.6
2,439,015 + -0.1
2,439,015 + -1.1
2,439,016 - +1.1
2,439,016 - +0.8
2,439,016 - -0.2
2,439,077 + +0.5
2,439,077 + +0.6
2,439,077 + +1.5
2,439,077 + -0.5
2,439,077 + +0.2
2,439,078 - +0.4
2,439,078 - -0.9
2,439,078 - -1.7
2,439,124 + +0.3
2,439,124 + +0.9

Or see this region's nucleotide sequence