Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09460

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09450 and QEN71_RS09455 are separated by 43 nucleotidesQEN71_RS09455 and QEN71_RS09460 are separated by 4 nucleotidesQEN71_RS09460 and QEN71_RS09465 are separated by 31 nucleotides QEN71_RS09450: QEN71_RS09450 - type VI secretion system Vgr family protein, at 2,112,085 to 2,115,219 _RS09450 QEN71_RS09455: QEN71_RS09455 - hypothetical protein, at 2,115,263 to 2,115,637 _RS09455 QEN71_RS09460: QEN71_RS09460 - hypothetical protein, at 2,115,642 to 2,116,196 _RS09460 QEN71_RS09465: QEN71_RS09465 - RHS repeat-associated core domain-containing protein, at 2,116,228 to 2,120,940 _RS09465 Position (kb) 2115 2116 2117Strain fitness (log2 ratio) -2 -1 0 1 2at 2114.806 kb on + strand, within QEN71_RS09450at 2114.806 kb on + strand, within QEN71_RS09450at 2114.807 kb on - strand, within QEN71_RS09450at 2114.807 kb on - strand, within QEN71_RS09450at 2114.807 kb on - strand, within QEN71_RS09450at 2114.835 kb on + strand, within QEN71_RS09450at 2114.836 kb on - strand, within QEN71_RS09450at 2114.836 kb on - strand, within QEN71_RS09450at 2115.140 kb on + strandat 2115.404 kb on + strand, within QEN71_RS09455at 2115.404 kb on + strand, within QEN71_RS09455at 2115.404 kb on + strand, within QEN71_RS09455at 2115.405 kb on - strand, within QEN71_RS09455at 2115.405 kb on - strand, within QEN71_RS09455at 2115.405 kb on - strand, within QEN71_RS09455at 2115.405 kb on - strand, within QEN71_RS09455at 2115.546 kb on + strand, within QEN71_RS09455at 2115.547 kb on - strand, within QEN71_RS09455at 2115.549 kb on - strand, within QEN71_RS09455at 2116.084 kb on - strand, within QEN71_RS09460at 2116.167 kb on + strandat 2116.167 kb on + strandat 2116.168 kb on - strandat 2116.168 kb on - strandat 2116.168 kb on - strandat 2116.168 kb on - strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.212 kb on + strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.213 kb on - strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.351 kb on + strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.352 kb on - strandat 2116.353 kb on + strandat 2116.353 kb on + strandat 2116.353 kb on + strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.354 kb on - strandat 2116.481 kb on - strandat 2116.834 kb on + strand, within QEN71_RS09465at 2116.834 kb on + strand, within QEN71_RS09465at 2116.834 kb on + strand, within QEN71_RS09465at 2116.834 kb on + strand, within QEN71_RS09465at 2116.834 kb on + strand, within QEN71_RS09465at 2116.834 kb on + strand, within QEN71_RS09465at 2116.835 kb on - strand, within QEN71_RS09465at 2116.835 kb on - strand, within QEN71_RS09465at 2116.922 kb on - strand, within QEN71_RS09465at 2116.922 kb on - strand, within QEN71_RS09465at 2116.922 kb on - strand, within QEN71_RS09465at 2116.922 kb on - strand, within QEN71_RS09465

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,114,806 + QEN71_RS09450 0.87 +0.3
2,114,806 + QEN71_RS09450 0.87 +0.5
2,114,807 - QEN71_RS09450 0.87 +0.5
2,114,807 - QEN71_RS09450 0.87 -0.1
2,114,807 - QEN71_RS09450 0.87 -0.8
2,114,835 + QEN71_RS09450 0.88 -0.7
2,114,836 - QEN71_RS09450 0.88 -0.4
2,114,836 - QEN71_RS09450 0.88 +2.3
2,115,140 + -0.3
2,115,404 + QEN71_RS09455 0.38 +0.1
2,115,404 + QEN71_RS09455 0.38 -2.7
2,115,404 + QEN71_RS09455 0.38 -0.0
2,115,405 - QEN71_RS09455 0.38 -0.8
2,115,405 - QEN71_RS09455 0.38 -0.7
2,115,405 - QEN71_RS09455 0.38 -1.0
2,115,405 - QEN71_RS09455 0.38 +0.6
2,115,546 + QEN71_RS09455 0.75 -0.7
2,115,547 - QEN71_RS09455 0.76 +0.3
2,115,549 - QEN71_RS09455 0.76 +1.0
2,116,084 - QEN71_RS09460 0.80 -0.4
2,116,167 + -0.3
2,116,167 + +0.3
2,116,168 - +0.3
2,116,168 - -2.1
2,116,168 - +0.6
2,116,168 - -0.2
2,116,212 + +0.5
2,116,212 + +0.1
2,116,212 + -0.4
2,116,212 + +0.8
2,116,212 + -1.1
2,116,212 + -0.8
2,116,212 + +0.1
2,116,212 + +0.0
2,116,212 + +0.3
2,116,212 + +1.4
2,116,213 - -0.5
2,116,213 - -1.6
2,116,213 - -0.2
2,116,213 - -0.2
2,116,213 - -1.5
2,116,213 - +0.0
2,116,213 - +0.1
2,116,213 - +0.1
2,116,213 - -0.8
2,116,213 - +1.7
2,116,213 - -1.3
2,116,213 - -0.1
2,116,213 - +0.6
2,116,351 + -0.1
2,116,351 + -0.1
2,116,351 + -0.6
2,116,351 + -0.0
2,116,351 + +0.9
2,116,351 + -0.5
2,116,351 + +0.2
2,116,351 + -0.6
2,116,351 + +0.7
2,116,352 - -1.7
2,116,352 - -0.5
2,116,352 - +0.1
2,116,352 - +2.2
2,116,352 - -1.2
2,116,352 - -0.2
2,116,352 - -0.3
2,116,353 + -0.1
2,116,353 + -1.3
2,116,353 + +0.3
2,116,354 - +0.8
2,116,354 - +0.3
2,116,354 - +0.3
2,116,354 - -0.1
2,116,354 - -0.8
2,116,354 - -0.2
2,116,354 - -1.9
2,116,481 - +0.9
2,116,834 + QEN71_RS09465 0.13 -0.5
2,116,834 + QEN71_RS09465 0.13 +0.1
2,116,834 + QEN71_RS09465 0.13 +0.6
2,116,834 + QEN71_RS09465 0.13 -0.6
2,116,834 + QEN71_RS09465 0.13 +0.8
2,116,834 + QEN71_RS09465 0.13 +0.5
2,116,835 - QEN71_RS09465 0.13 -2.2
2,116,835 - QEN71_RS09465 0.13 -2.3
2,116,922 - QEN71_RS09465 0.15 -0.0
2,116,922 - QEN71_RS09465 0.15 -1.2
2,116,922 - QEN71_RS09465 0.15 +1.0
2,116,922 - QEN71_RS09465 0.15 -0.4

Or see this region's nucleotide sequence