Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09450 and QEN71_RS09455 are separated by 43 nucleotides QEN71_RS09455 and QEN71_RS09460 are separated by 4 nucleotides QEN71_RS09460 and QEN71_RS09465 are separated by 31 nucleotides
QEN71_RS09450: QEN71_RS09450 - type VI secretion system Vgr family protein, at 2,112,085 to 2,115,219
_RS09450
QEN71_RS09455: QEN71_RS09455 - hypothetical protein, at 2,115,263 to 2,115,637
_RS09455
QEN71_RS09460: QEN71_RS09460 - hypothetical protein, at 2,115,642 to 2,116,196
_RS09460
QEN71_RS09465: QEN71_RS09465 - RHS repeat-associated core domain-containing protein, at 2,116,228 to 2,120,940
_RS09465
Position (kb)
2115
2116
2117 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2114.806 kb on + strand, within QEN71_RS09450 at 2114.806 kb on + strand, within QEN71_RS09450 at 2114.807 kb on - strand, within QEN71_RS09450 at 2114.807 kb on - strand, within QEN71_RS09450 at 2114.807 kb on - strand, within QEN71_RS09450 at 2114.835 kb on + strand, within QEN71_RS09450 at 2114.836 kb on - strand, within QEN71_RS09450 at 2114.836 kb on - strand, within QEN71_RS09450 at 2115.140 kb on + strand at 2115.404 kb on + strand, within QEN71_RS09455 at 2115.404 kb on + strand, within QEN71_RS09455 at 2115.404 kb on + strand, within QEN71_RS09455 at 2115.405 kb on - strand, within QEN71_RS09455 at 2115.405 kb on - strand, within QEN71_RS09455 at 2115.405 kb on - strand, within QEN71_RS09455 at 2115.405 kb on - strand, within QEN71_RS09455 at 2115.546 kb on + strand, within QEN71_RS09455 at 2115.547 kb on - strand, within QEN71_RS09455 at 2115.549 kb on - strand, within QEN71_RS09455 at 2116.084 kb on - strand, within QEN71_RS09460 at 2116.167 kb on + strand at 2116.167 kb on + strand at 2116.168 kb on - strand at 2116.168 kb on - strand at 2116.168 kb on - strand at 2116.168 kb on - strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.212 kb on + strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.213 kb on - strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.351 kb on + strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.352 kb on - strand at 2116.353 kb on + strand at 2116.353 kb on + strand at 2116.353 kb on + strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.354 kb on - strand at 2116.481 kb on - strand at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.834 kb on + strand, within QEN71_RS09465 at 2116.835 kb on - strand, within QEN71_RS09465 at 2116.835 kb on - strand, within QEN71_RS09465 at 2116.922 kb on - strand, within QEN71_RS09465 at 2116.922 kb on - strand, within QEN71_RS09465 at 2116.922 kb on - strand, within QEN71_RS09465 at 2116.922 kb on - strand, within QEN71_RS09465
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,114,806 + QEN71_RS09450 0.87 +0.3 2,114,806 + QEN71_RS09450 0.87 +0.5 2,114,807 - QEN71_RS09450 0.87 +0.5 2,114,807 - QEN71_RS09450 0.87 -0.1 2,114,807 - QEN71_RS09450 0.87 -0.8 2,114,835 + QEN71_RS09450 0.88 -0.7 2,114,836 - QEN71_RS09450 0.88 -0.4 2,114,836 - QEN71_RS09450 0.88 +2.3 2,115,140 + -0.3 2,115,404 + QEN71_RS09455 0.38 +0.1 2,115,404 + QEN71_RS09455 0.38 -2.7 2,115,404 + QEN71_RS09455 0.38 -0.0 2,115,405 - QEN71_RS09455 0.38 -0.8 2,115,405 - QEN71_RS09455 0.38 -0.7 2,115,405 - QEN71_RS09455 0.38 -1.0 2,115,405 - QEN71_RS09455 0.38 +0.6 2,115,546 + QEN71_RS09455 0.75 -0.7 2,115,547 - QEN71_RS09455 0.76 +0.3 2,115,549 - QEN71_RS09455 0.76 +1.0 2,116,084 - QEN71_RS09460 0.80 -0.4 2,116,167 + -0.3 2,116,167 + +0.3 2,116,168 - +0.3 2,116,168 - -2.1 2,116,168 - +0.6 2,116,168 - -0.2 2,116,212 + +0.5 2,116,212 + +0.1 2,116,212 + -0.4 2,116,212 + +0.8 2,116,212 + -1.1 2,116,212 + -0.8 2,116,212 + +0.1 2,116,212 + +0.0 2,116,212 + +0.3 2,116,212 + +1.4 2,116,213 - -0.5 2,116,213 - -1.6 2,116,213 - -0.2 2,116,213 - -0.2 2,116,213 - -1.5 2,116,213 - +0.0 2,116,213 - +0.1 2,116,213 - +0.1 2,116,213 - -0.8 2,116,213 - +1.7 2,116,213 - -1.3 2,116,213 - -0.1 2,116,213 - +0.6 2,116,351 + -0.1 2,116,351 + -0.1 2,116,351 + -0.6 2,116,351 + -0.0 2,116,351 + +0.9 2,116,351 + -0.5 2,116,351 + +0.2 2,116,351 + -0.6 2,116,351 + +0.7 2,116,352 - -1.7 2,116,352 - -0.5 2,116,352 - +0.1 2,116,352 - +2.2 2,116,352 - -1.2 2,116,352 - -0.2 2,116,352 - -0.3 2,116,353 + -0.1 2,116,353 + -1.3 2,116,353 + +0.3 2,116,354 - +0.8 2,116,354 - +0.3 2,116,354 - +0.3 2,116,354 - -0.1 2,116,354 - -0.8 2,116,354 - -0.2 2,116,354 - -1.9 2,116,481 - +0.9 2,116,834 + QEN71_RS09465 0.13 -0.5 2,116,834 + QEN71_RS09465 0.13 +0.1 2,116,834 + QEN71_RS09465 0.13 +0.6 2,116,834 + QEN71_RS09465 0.13 -0.6 2,116,834 + QEN71_RS09465 0.13 +0.8 2,116,834 + QEN71_RS09465 0.13 +0.5 2,116,835 - QEN71_RS09465 0.13 -2.2 2,116,835 - QEN71_RS09465 0.13 -2.3 2,116,922 - QEN71_RS09465 0.15 -0.0 2,116,922 - QEN71_RS09465 0.15 -1.2 2,116,922 - QEN71_RS09465 0.15 +1.0 2,116,922 - QEN71_RS09465 0.15 -0.4
Or see this region's nucleotide sequence