Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08215

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08210 and QEN71_RS08215 are separated by 40 nucleotidesQEN71_RS08215 and QEN71_RS08220 are separated by 19 nucleotides QEN71_RS08210: QEN71_RS08210 - SDR family oxidoreductase, at 1,819,331 to 1,820,116 _RS08210 QEN71_RS08215: QEN71_RS08215 - DUF1254 domain-containing protein, at 1,820,157 to 1,821,626 _RS08215 QEN71_RS08220: QEN71_RS08220 - LuxR C-terminal-related transcriptional regulator, at 1,821,646 to 1,824,348 _RS08220 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -1 0 1at 1819.175 kb on - strandat 1819.206 kb on - strandat 1819.240 kb on - strandat 1819.334 kb on + strandat 1819.351 kb on - strandat 1819.599 kb on + strand, within QEN71_RS08210at 1819.599 kb on + strand, within QEN71_RS08210at 1819.600 kb on - strand, within QEN71_RS08210at 1819.600 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1820.304 kb on + strand, within QEN71_RS08215at 1820.304 kb on + strand, within QEN71_RS08215at 1820.305 kb on - strand, within QEN71_RS08215at 1820.460 kb on + strand, within QEN71_RS08215at 1820.460 kb on + strand, within QEN71_RS08215at 1820.461 kb on - strand, within QEN71_RS08215at 1820.463 kb on - strand, within QEN71_RS08215at 1820.640 kb on + strand, within QEN71_RS08215at 1820.640 kb on + strand, within QEN71_RS08215at 1820.641 kb on - strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.662 kb on - strand, within QEN71_RS08215at 1820.729 kb on + strand, within QEN71_RS08215at 1820.729 kb on + strand, within QEN71_RS08215at 1820.730 kb on - strand, within QEN71_RS08215at 1821.189 kb on + strand, within QEN71_RS08215at 1821.252 kb on + strand, within QEN71_RS08215at 1821.252 kb on + strand, within QEN71_RS08215at 1821.255 kb on + strand, within QEN71_RS08215at 1821.255 kb on + strand, within QEN71_RS08215at 1821.429 kb on - strand, within QEN71_RS08215at 1821.444 kb on + strand, within QEN71_RS08215at 1821.444 kb on + strand, within QEN71_RS08215at 1821.445 kb on - strand, within QEN71_RS08215at 1821.445 kb on - strand, within QEN71_RS08215at 1821.471 kb on + strand, within QEN71_RS08215at 1821.472 kb on - strand, within QEN71_RS08215at 1821.610 kb on + strandat 1821.647 kb on + strandat 1821.647 kb on + strandat 1821.647 kb on + strandat 1821.721 kb on - strandat 1821.932 kb on + strand, within QEN71_RS08220at 1822.018 kb on - strand, within QEN71_RS08220at 1822.589 kb on + strand, within QEN71_RS08220

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,819,175 - +0.8
1,819,206 - -0.2
1,819,240 - -0.6
1,819,334 + -0.3
1,819,351 - -0.2
1,819,599 + QEN71_RS08210 0.34 -0.5
1,819,599 + QEN71_RS08210 0.34 -0.1
1,819,600 - QEN71_RS08210 0.34 -0.7
1,819,600 - QEN71_RS08210 0.34 -0.7
1,819,974 - QEN71_RS08210 0.82 +0.6
1,819,974 - QEN71_RS08210 0.82 -0.7
1,819,974 - QEN71_RS08210 0.82 -0.5
1,819,974 - QEN71_RS08210 0.82 -0.5
1,820,304 + QEN71_RS08215 0.10 -0.1
1,820,304 + QEN71_RS08215 0.10 -1.2
1,820,305 - QEN71_RS08215 0.10 -0.2
1,820,460 + QEN71_RS08215 0.21 +0.4
1,820,460 + QEN71_RS08215 0.21 -1.1
1,820,461 - QEN71_RS08215 0.21 +0.1
1,820,463 - QEN71_RS08215 0.21 +1.0
1,820,640 + QEN71_RS08215 0.33 +0.2
1,820,640 + QEN71_RS08215 0.33 -0.3
1,820,641 - QEN71_RS08215 0.33 +0.1
1,820,661 + QEN71_RS08215 0.34 -0.7
1,820,661 + QEN71_RS08215 0.34 -0.2
1,820,661 + QEN71_RS08215 0.34 -0.3
1,820,662 - QEN71_RS08215 0.34 +0.4
1,820,729 + QEN71_RS08215 0.39 +0.0
1,820,729 + QEN71_RS08215 0.39 -0.6
1,820,730 - QEN71_RS08215 0.39 +0.1
1,821,189 + QEN71_RS08215 0.70 -0.6
1,821,252 + QEN71_RS08215 0.74 +1.5
1,821,252 + QEN71_RS08215 0.74 -0.3
1,821,255 + QEN71_RS08215 0.75 +0.0
1,821,255 + QEN71_RS08215 0.75 +0.5
1,821,429 - QEN71_RS08215 0.87 -0.8
1,821,444 + QEN71_RS08215 0.88 +0.4
1,821,444 + QEN71_RS08215 0.88 -0.2
1,821,445 - QEN71_RS08215 0.88 +0.7
1,821,445 - QEN71_RS08215 0.88 +0.7
1,821,471 + QEN71_RS08215 0.89 +0.4
1,821,472 - QEN71_RS08215 0.89 +0.3
1,821,610 + +0.1
1,821,647 + -1.7
1,821,647 + -0.9
1,821,647 + +0.7
1,821,721 - +1.3
1,821,932 + QEN71_RS08220 0.11 -1.1
1,822,018 - QEN71_RS08220 0.14 -1.1
1,822,589 + QEN71_RS08220 0.35 -0.2

Or see this region's nucleotide sequence