Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS08000 and QEN71_RS08005 are separated by 213 nucleotides QEN71_RS08005 and QEN71_RS08010 are separated by 140 nucleotides QEN71_RS08010 and QEN71_RS08015 overlap by 11 nucleotides QEN71_RS08015 and QEN71_RS08020 overlap by 4 nucleotides
QEN71_RS08000: QEN71_RS08000 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 1,773,138 to 1,774,055
_RS08000
QEN71_RS08005: QEN71_RS08005 - glucose-6-phosphate dehydrogenase, at 1,774,269 to 1,775,753
_RS08005
QEN71_RS08010: QEN71_RS08010 - type VI secretion system tube protein Hcp, at 1,775,894 to 1,776,361
_RS08010
QEN71_RS08015: QEN71_RS08015 - hypothetical protein, at 1,776,351 to 1,776,623
_RS08015
QEN71_RS08020: QEN71_RS08020 - DUF2778 domain-containing protein, at 1,776,620 to 1,777,066
_RS08020
Position (kb)
1774
1775
1776 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1773.586 kb on - strand, within QEN71_RS08000 at 1773.615 kb on - strand, within QEN71_RS08000 at 1773.615 kb on - strand, within QEN71_RS08000 at 1773.615 kb on - strand, within QEN71_RS08000 at 1773.673 kb on + strand, within QEN71_RS08000 at 1773.674 kb on - strand, within QEN71_RS08000 at 1773.682 kb on + strand, within QEN71_RS08000 at 1773.683 kb on - strand, within QEN71_RS08000 at 1773.683 kb on - strand, within QEN71_RS08000 at 1773.852 kb on + strand, within QEN71_RS08000 at 1773.852 kb on + strand, within QEN71_RS08000 at 1773.852 kb on + strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1773.853 kb on - strand, within QEN71_RS08000 at 1774.171 kb on + strand at 1774.171 kb on + strand at 1774.171 kb on + strand at 1774.171 kb on + strand at 1774.172 kb on - strand at 1774.172 kb on - strand at 1774.172 kb on - strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.198 kb on + strand at 1774.199 kb on - strand at 1774.199 kb on - strand at 1774.199 kb on - strand at 1774.199 kb on - strand at 1774.199 kb on - strand at 1774.268 kb on + strand at 1774.371 kb on + strand at 1774.371 kb on + strand at 1774.372 kb on - strand at 1774.372 kb on - strand at 1774.412 kb on + strand at 1774.487 kb on + strand, within QEN71_RS08005 at 1774.545 kb on + strand, within QEN71_RS08005 at 1774.545 kb on + strand, within QEN71_RS08005 at 1774.546 kb on - strand, within QEN71_RS08005 at 1774.578 kb on + strand, within QEN71_RS08005 at 1774.578 kb on + strand, within QEN71_RS08005 at 1774.627 kb on - strand, within QEN71_RS08005 at 1774.627 kb on - strand, within QEN71_RS08005 at 1774.797 kb on + strand, within QEN71_RS08005 at 1774.893 kb on + strand, within QEN71_RS08005 at 1774.893 kb on + strand, within QEN71_RS08005 at 1774.893 kb on + strand, within QEN71_RS08005 at 1774.894 kb on - strand, within QEN71_RS08005 at 1774.894 kb on - strand, within QEN71_RS08005 at 1774.956 kb on + strand, within QEN71_RS08005 at 1774.956 kb on + strand, within QEN71_RS08005 at 1774.956 kb on + strand, within QEN71_RS08005 at 1774.956 kb on + strand, within QEN71_RS08005 at 1774.956 kb on + strand, within QEN71_RS08005 at 1774.957 kb on - strand, within QEN71_RS08005 at 1774.957 kb on - strand, within QEN71_RS08005 at 1774.957 kb on - strand, within QEN71_RS08005 at 1774.957 kb on - strand, within QEN71_RS08005 at 1775.181 kb on + strand, within QEN71_RS08005 at 1775.182 kb on - strand, within QEN71_RS08005 at 1775.246 kb on + strand, within QEN71_RS08005 at 1775.281 kb on - strand, within QEN71_RS08005 at 1775.281 kb on - strand, within QEN71_RS08005 at 1775.366 kb on + strand, within QEN71_RS08005 at 1775.367 kb on - strand, within QEN71_RS08005 at 1775.384 kb on + strand, within QEN71_RS08005 at 1775.384 kb on + strand, within QEN71_RS08005 at 1775.384 kb on + strand, within QEN71_RS08005 at 1775.384 kb on + strand, within QEN71_RS08005 at 1775.538 kb on + strand, within QEN71_RS08005 at 1775.538 kb on + strand, within QEN71_RS08005 at 1775.576 kb on + strand, within QEN71_RS08005 at 1775.576 kb on + strand, within QEN71_RS08005 at 1775.577 kb on - strand, within QEN71_RS08005 at 1775.577 kb on - strand, within QEN71_RS08005 at 1775.577 kb on - strand, within QEN71_RS08005 at 1775.577 kb on - strand, within QEN71_RS08005 at 1775.660 kb on + strand at 1775.673 kb on + strand at 1775.674 kb on - strand at 1775.674 kb on - strand at 1775.674 kb on - strand at 1775.729 kb on + strand at 1775.729 kb on + strand at 1775.730 kb on - strand at 1775.730 kb on - strand at 1775.765 kb on + strand at 1775.870 kb on + strand at 1775.870 kb on + strand at 1775.871 kb on - strand at 1775.937 kb on - strand at 1775.976 kb on + strand, within QEN71_RS08010 at 1775.976 kb on + strand, within QEN71_RS08010 at 1776.019 kb on - strand, within QEN71_RS08010 at 1776.036 kb on - strand, within QEN71_RS08010 at 1776.100 kb on + strand, within QEN71_RS08010 at 1776.113 kb on + strand, within QEN71_RS08010 at 1776.128 kb on - strand, within QEN71_RS08010 at 1776.128 kb on - strand, within QEN71_RS08010 at 1776.128 kb on - strand, within QEN71_RS08010 at 1776.147 kb on + strand, within QEN71_RS08010 at 1776.148 kb on - strand, within QEN71_RS08010 at 1776.148 kb on - strand, within QEN71_RS08010 at 1776.148 kb on - strand, within QEN71_RS08010 at 1776.148 kb on - strand, within QEN71_RS08010 at 1776.155 kb on + strand, within QEN71_RS08010 at 1776.155 kb on + strand, within QEN71_RS08010 at 1776.155 kb on + strand, within QEN71_RS08010 at 1776.156 kb on - strand, within QEN71_RS08010 at 1776.191 kb on + strand, within QEN71_RS08010 at 1776.379 kb on - strand, within QEN71_RS08015 at 1776.482 kb on - strand, within QEN71_RS08015 at 1776.486 kb on - strand, within QEN71_RS08015 at 1776.591 kb on + strand, within QEN71_RS08015 at 1776.708 kb on + strand, within QEN71_RS08020 at 1776.709 kb on - strand, within QEN71_RS08020
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 1,773,586 - QEN71_RS08000 0.49 -0.3 1,773,615 - QEN71_RS08000 0.52 -1.5 1,773,615 - QEN71_RS08000 0.52 +0.2 1,773,615 - QEN71_RS08000 0.52 +0.5 1,773,673 + QEN71_RS08000 0.58 -0.0 1,773,674 - QEN71_RS08000 0.58 -0.5 1,773,682 + QEN71_RS08000 0.59 -1.3 1,773,683 - QEN71_RS08000 0.59 -0.5 1,773,683 - QEN71_RS08000 0.59 +0.2 1,773,852 + QEN71_RS08000 0.78 +0.2 1,773,852 + QEN71_RS08000 0.78 +0.3 1,773,852 + QEN71_RS08000 0.78 +0.0 1,773,853 - QEN71_RS08000 0.78 -0.0 1,773,853 - QEN71_RS08000 0.78 -0.2 1,773,853 - QEN71_RS08000 0.78 -0.1 1,773,853 - QEN71_RS08000 0.78 +0.2 1,773,853 - QEN71_RS08000 0.78 -0.7 1,773,853 - QEN71_RS08000 0.78 +0.3 1,774,171 + -1.0 1,774,171 + +1.4 1,774,171 + -1.6 1,774,171 + -1.4 1,774,172 - +0.8 1,774,172 - +1.3 1,774,172 - +1.0 1,774,198 + -0.8 1,774,198 + -0.0 1,774,198 + -0.6 1,774,198 + +0.7 1,774,198 + -0.8 1,774,198 + +0.2 1,774,198 + +0.3 1,774,198 + +0.7 1,774,198 + +0.3 1,774,198 + -1.0 1,774,198 + -0.1 1,774,199 - -0.5 1,774,199 - -0.3 1,774,199 - +1.0 1,774,199 - -0.5 1,774,199 - +0.4 1,774,268 + +0.2 1,774,371 + -0.3 1,774,371 + +0.5 1,774,372 - +0.7 1,774,372 - -0.5 1,774,412 + -3.1 1,774,487 + QEN71_RS08005 0.15 +0.1 1,774,545 + QEN71_RS08005 0.19 -0.5 1,774,545 + QEN71_RS08005 0.19 +0.4 1,774,546 - QEN71_RS08005 0.19 -0.5 1,774,578 + QEN71_RS08005 0.21 -0.4 1,774,578 + QEN71_RS08005 0.21 -0.0 1,774,627 - QEN71_RS08005 0.24 +0.1 1,774,627 - QEN71_RS08005 0.24 -0.0 1,774,797 + QEN71_RS08005 0.36 -0.3 1,774,893 + QEN71_RS08005 0.42 -0.4 1,774,893 + QEN71_RS08005 0.42 +0.7 1,774,893 + QEN71_RS08005 0.42 +0.5 1,774,894 - QEN71_RS08005 0.42 +0.0 1,774,894 - QEN71_RS08005 0.42 -1.6 1,774,956 + QEN71_RS08005 0.46 +1.5 1,774,956 + QEN71_RS08005 0.46 -1.9 1,774,956 + QEN71_RS08005 0.46 +1.7 1,774,956 + QEN71_RS08005 0.46 -0.6 1,774,956 + QEN71_RS08005 0.46 +0.2 1,774,957 - QEN71_RS08005 0.46 -0.2 1,774,957 - QEN71_RS08005 0.46 -2.5 1,774,957 - QEN71_RS08005 0.46 +0.5 1,774,957 - QEN71_RS08005 0.46 +0.6 1,775,181 + QEN71_RS08005 0.61 -1.3 1,775,182 - QEN71_RS08005 0.61 +1.8 1,775,246 + QEN71_RS08005 0.66 +0.0 1,775,281 - QEN71_RS08005 0.68 -1.2 1,775,281 - QEN71_RS08005 0.68 +0.5 1,775,366 + QEN71_RS08005 0.74 -0.2 1,775,367 - QEN71_RS08005 0.74 -1.0 1,775,384 + QEN71_RS08005 0.75 +0.7 1,775,384 + QEN71_RS08005 0.75 +0.5 1,775,384 + QEN71_RS08005 0.75 +2.7 1,775,384 + QEN71_RS08005 0.75 -0.3 1,775,538 + QEN71_RS08005 0.85 +0.1 1,775,538 + QEN71_RS08005 0.85 +0.4 1,775,576 + QEN71_RS08005 0.88 -0.6 1,775,576 + QEN71_RS08005 0.88 -0.0 1,775,577 - QEN71_RS08005 0.88 -1.0 1,775,577 - QEN71_RS08005 0.88 +1.5 1,775,577 - QEN71_RS08005 0.88 +0.0 1,775,577 - QEN71_RS08005 0.88 +0.1 1,775,660 + -0.8 1,775,673 + -0.3 1,775,674 - +1.1 1,775,674 - -0.5 1,775,674 - +1.1 1,775,729 + +0.5 1,775,729 + -0.7 1,775,730 - +0.2 1,775,730 - +0.8 1,775,765 + -2.8 1,775,870 + +0.1 1,775,870 + +1.1 1,775,871 - +0.2 1,775,937 - -0.4 1,775,976 + QEN71_RS08010 0.18 +0.2 1,775,976 + QEN71_RS08010 0.18 -0.8 1,776,019 - QEN71_RS08010 0.27 +0.3 1,776,036 - QEN71_RS08010 0.30 -1.3 1,776,100 + QEN71_RS08010 0.44 -1.3 1,776,113 + QEN71_RS08010 0.47 -0.6 1,776,128 - QEN71_RS08010 0.50 +0.3 1,776,128 - QEN71_RS08010 0.50 -0.8 1,776,128 - QEN71_RS08010 0.50 +0.1 1,776,147 + QEN71_RS08010 0.54 +0.4 1,776,148 - QEN71_RS08010 0.54 +0.4 1,776,148 - QEN71_RS08010 0.54 +0.1 1,776,148 - QEN71_RS08010 0.54 +0.3 1,776,148 - QEN71_RS08010 0.54 -0.2 1,776,155 + QEN71_RS08010 0.56 -0.7 1,776,155 + QEN71_RS08010 0.56 +0.4 1,776,155 + QEN71_RS08010 0.56 +0.1 1,776,156 - QEN71_RS08010 0.56 +0.2 1,776,191 + QEN71_RS08010 0.63 +0.2 1,776,379 - QEN71_RS08015 0.10 -0.0 1,776,482 - QEN71_RS08015 0.48 +0.5 1,776,486 - QEN71_RS08015 0.49 +1.0 1,776,591 + QEN71_RS08015 0.88 +0.8 1,776,708 + QEN71_RS08020 0.20 -0.4 1,776,709 - QEN71_RS08020 0.20 +0.9
Or see this region's nucleotide sequence