Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08005

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08000 and QEN71_RS08005 are separated by 213 nucleotidesQEN71_RS08005 and QEN71_RS08010 are separated by 140 nucleotidesQEN71_RS08010 and QEN71_RS08015 overlap by 11 nucleotidesQEN71_RS08015 and QEN71_RS08020 overlap by 4 nucleotides QEN71_RS08000: QEN71_RS08000 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 1,773,138 to 1,774,055 _RS08000 QEN71_RS08005: QEN71_RS08005 - glucose-6-phosphate dehydrogenase, at 1,774,269 to 1,775,753 _RS08005 QEN71_RS08010: QEN71_RS08010 - type VI secretion system tube protein Hcp, at 1,775,894 to 1,776,361 _RS08010 QEN71_RS08015: QEN71_RS08015 - hypothetical protein, at 1,776,351 to 1,776,623 _RS08015 QEN71_RS08020: QEN71_RS08020 - DUF2778 domain-containing protein, at 1,776,620 to 1,777,066 _RS08020 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1773.586 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.673 kb on + strand, within QEN71_RS08000at 1773.674 kb on - strand, within QEN71_RS08000at 1773.682 kb on + strand, within QEN71_RS08000at 1773.683 kb on - strand, within QEN71_RS08000at 1773.683 kb on - strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.172 kb on - strandat 1774.172 kb on - strandat 1774.172 kb on - strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.268 kb on + strandat 1774.371 kb on + strandat 1774.371 kb on + strandat 1774.372 kb on - strandat 1774.372 kb on - strandat 1774.412 kb on + strandat 1774.487 kb on + strand, within QEN71_RS08005at 1774.545 kb on + strand, within QEN71_RS08005at 1774.545 kb on + strand, within QEN71_RS08005at 1774.546 kb on - strand, within QEN71_RS08005at 1774.578 kb on + strand, within QEN71_RS08005at 1774.578 kb on + strand, within QEN71_RS08005at 1774.627 kb on - strand, within QEN71_RS08005at 1774.627 kb on - strand, within QEN71_RS08005at 1774.797 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.894 kb on - strand, within QEN71_RS08005at 1774.894 kb on - strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1775.181 kb on + strand, within QEN71_RS08005at 1775.182 kb on - strand, within QEN71_RS08005at 1775.246 kb on + strand, within QEN71_RS08005at 1775.281 kb on - strand, within QEN71_RS08005at 1775.281 kb on - strand, within QEN71_RS08005at 1775.366 kb on + strand, within QEN71_RS08005at 1775.367 kb on - strand, within QEN71_RS08005at 1775.384 kb on + strand, within QEN71_RS08005at 1775.384 kb on + strand, within QEN71_RS08005at 1775.384 kb on + strand, within QEN71_RS08005at 1775.384 kb on + strand, within QEN71_RS08005at 1775.538 kb on + strand, within QEN71_RS08005at 1775.538 kb on + strand, within QEN71_RS08005at 1775.576 kb on + strand, within QEN71_RS08005at 1775.576 kb on + strand, within QEN71_RS08005at 1775.577 kb on - strand, within QEN71_RS08005at 1775.577 kb on - strand, within QEN71_RS08005at 1775.577 kb on - strand, within QEN71_RS08005at 1775.577 kb on - strand, within QEN71_RS08005at 1775.660 kb on + strandat 1775.673 kb on + strandat 1775.674 kb on - strandat 1775.674 kb on - strandat 1775.674 kb on - strandat 1775.729 kb on + strandat 1775.729 kb on + strandat 1775.730 kb on - strandat 1775.730 kb on - strandat 1775.765 kb on + strandat 1775.870 kb on + strandat 1775.870 kb on + strandat 1775.871 kb on - strandat 1775.937 kb on - strandat 1775.976 kb on + strand, within QEN71_RS08010at 1775.976 kb on + strand, within QEN71_RS08010at 1776.019 kb on - strand, within QEN71_RS08010at 1776.036 kb on - strand, within QEN71_RS08010at 1776.100 kb on + strand, within QEN71_RS08010at 1776.113 kb on + strand, within QEN71_RS08010at 1776.128 kb on - strand, within QEN71_RS08010at 1776.128 kb on - strand, within QEN71_RS08010at 1776.128 kb on - strand, within QEN71_RS08010at 1776.147 kb on + strand, within QEN71_RS08010at 1776.148 kb on - strand, within QEN71_RS08010at 1776.148 kb on - strand, within QEN71_RS08010at 1776.148 kb on - strand, within QEN71_RS08010at 1776.148 kb on - strand, within QEN71_RS08010at 1776.155 kb on + strand, within QEN71_RS08010at 1776.155 kb on + strand, within QEN71_RS08010at 1776.155 kb on + strand, within QEN71_RS08010at 1776.156 kb on - strand, within QEN71_RS08010at 1776.191 kb on + strand, within QEN71_RS08010at 1776.379 kb on - strand, within QEN71_RS08015at 1776.482 kb on - strand, within QEN71_RS08015at 1776.486 kb on - strand, within QEN71_RS08015at 1776.591 kb on + strand, within QEN71_RS08015at 1776.708 kb on + strand, within QEN71_RS08020at 1776.709 kb on - strand, within QEN71_RS08020

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,773,586 - QEN71_RS08000 0.49 -0.3
1,773,615 - QEN71_RS08000 0.52 -1.5
1,773,615 - QEN71_RS08000 0.52 +0.2
1,773,615 - QEN71_RS08000 0.52 +0.5
1,773,673 + QEN71_RS08000 0.58 -0.0
1,773,674 - QEN71_RS08000 0.58 -0.5
1,773,682 + QEN71_RS08000 0.59 -1.3
1,773,683 - QEN71_RS08000 0.59 -0.5
1,773,683 - QEN71_RS08000 0.59 +0.2
1,773,852 + QEN71_RS08000 0.78 +0.2
1,773,852 + QEN71_RS08000 0.78 +0.3
1,773,852 + QEN71_RS08000 0.78 +0.0
1,773,853 - QEN71_RS08000 0.78 -0.0
1,773,853 - QEN71_RS08000 0.78 -0.2
1,773,853 - QEN71_RS08000 0.78 -0.1
1,773,853 - QEN71_RS08000 0.78 +0.2
1,773,853 - QEN71_RS08000 0.78 -0.7
1,773,853 - QEN71_RS08000 0.78 +0.3
1,774,171 + -1.0
1,774,171 + +1.4
1,774,171 + -1.6
1,774,171 + -1.4
1,774,172 - +0.8
1,774,172 - +1.3
1,774,172 - +1.0
1,774,198 + -0.8
1,774,198 + -0.0
1,774,198 + -0.6
1,774,198 + +0.7
1,774,198 + -0.8
1,774,198 + +0.2
1,774,198 + +0.3
1,774,198 + +0.7
1,774,198 + +0.3
1,774,198 + -1.0
1,774,198 + -0.1
1,774,199 - -0.5
1,774,199 - -0.3
1,774,199 - +1.0
1,774,199 - -0.5
1,774,199 - +0.4
1,774,268 + +0.2
1,774,371 + -0.3
1,774,371 + +0.5
1,774,372 - +0.7
1,774,372 - -0.5
1,774,412 + -3.1
1,774,487 + QEN71_RS08005 0.15 +0.1
1,774,545 + QEN71_RS08005 0.19 -0.5
1,774,545 + QEN71_RS08005 0.19 +0.4
1,774,546 - QEN71_RS08005 0.19 -0.5
1,774,578 + QEN71_RS08005 0.21 -0.4
1,774,578 + QEN71_RS08005 0.21 -0.0
1,774,627 - QEN71_RS08005 0.24 +0.1
1,774,627 - QEN71_RS08005 0.24 -0.0
1,774,797 + QEN71_RS08005 0.36 -0.3
1,774,893 + QEN71_RS08005 0.42 -0.4
1,774,893 + QEN71_RS08005 0.42 +0.7
1,774,893 + QEN71_RS08005 0.42 +0.5
1,774,894 - QEN71_RS08005 0.42 +0.0
1,774,894 - QEN71_RS08005 0.42 -1.6
1,774,956 + QEN71_RS08005 0.46 +1.5
1,774,956 + QEN71_RS08005 0.46 -1.9
1,774,956 + QEN71_RS08005 0.46 +1.7
1,774,956 + QEN71_RS08005 0.46 -0.6
1,774,956 + QEN71_RS08005 0.46 +0.2
1,774,957 - QEN71_RS08005 0.46 -0.2
1,774,957 - QEN71_RS08005 0.46 -2.5
1,774,957 - QEN71_RS08005 0.46 +0.5
1,774,957 - QEN71_RS08005 0.46 +0.6
1,775,181 + QEN71_RS08005 0.61 -1.3
1,775,182 - QEN71_RS08005 0.61 +1.8
1,775,246 + QEN71_RS08005 0.66 +0.0
1,775,281 - QEN71_RS08005 0.68 -1.2
1,775,281 - QEN71_RS08005 0.68 +0.5
1,775,366 + QEN71_RS08005 0.74 -0.2
1,775,367 - QEN71_RS08005 0.74 -1.0
1,775,384 + QEN71_RS08005 0.75 +0.7
1,775,384 + QEN71_RS08005 0.75 +0.5
1,775,384 + QEN71_RS08005 0.75 +2.7
1,775,384 + QEN71_RS08005 0.75 -0.3
1,775,538 + QEN71_RS08005 0.85 +0.1
1,775,538 + QEN71_RS08005 0.85 +0.4
1,775,576 + QEN71_RS08005 0.88 -0.6
1,775,576 + QEN71_RS08005 0.88 -0.0
1,775,577 - QEN71_RS08005 0.88 -1.0
1,775,577 - QEN71_RS08005 0.88 +1.5
1,775,577 - QEN71_RS08005 0.88 +0.0
1,775,577 - QEN71_RS08005 0.88 +0.1
1,775,660 + -0.8
1,775,673 + -0.3
1,775,674 - +1.1
1,775,674 - -0.5
1,775,674 - +1.1
1,775,729 + +0.5
1,775,729 + -0.7
1,775,730 - +0.2
1,775,730 - +0.8
1,775,765 + -2.8
1,775,870 + +0.1
1,775,870 + +1.1
1,775,871 - +0.2
1,775,937 - -0.4
1,775,976 + QEN71_RS08010 0.18 +0.2
1,775,976 + QEN71_RS08010 0.18 -0.8
1,776,019 - QEN71_RS08010 0.27 +0.3
1,776,036 - QEN71_RS08010 0.30 -1.3
1,776,100 + QEN71_RS08010 0.44 -1.3
1,776,113 + QEN71_RS08010 0.47 -0.6
1,776,128 - QEN71_RS08010 0.50 +0.3
1,776,128 - QEN71_RS08010 0.50 -0.8
1,776,128 - QEN71_RS08010 0.50 +0.1
1,776,147 + QEN71_RS08010 0.54 +0.4
1,776,148 - QEN71_RS08010 0.54 +0.4
1,776,148 - QEN71_RS08010 0.54 +0.1
1,776,148 - QEN71_RS08010 0.54 +0.3
1,776,148 - QEN71_RS08010 0.54 -0.2
1,776,155 + QEN71_RS08010 0.56 -0.7
1,776,155 + QEN71_RS08010 0.56 +0.4
1,776,155 + QEN71_RS08010 0.56 +0.1
1,776,156 - QEN71_RS08010 0.56 +0.2
1,776,191 + QEN71_RS08010 0.63 +0.2
1,776,379 - QEN71_RS08015 0.10 -0.0
1,776,482 - QEN71_RS08015 0.48 +0.5
1,776,486 - QEN71_RS08015 0.49 +1.0
1,776,591 + QEN71_RS08015 0.88 +0.8
1,776,708 + QEN71_RS08020 0.20 -0.4
1,776,709 - QEN71_RS08020 0.20 +0.9

Or see this region's nucleotide sequence