Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05845

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05840 and QEN71_RS05845 are separated by 306 nucleotidesQEN71_RS05845 and QEN71_RS05850 overlap by 8 nucleotidesQEN71_RS05850 and QEN71_RS05855 are separated by 36 nucleotides QEN71_RS05840: QEN71_RS05840 - regulator, at 1,295,954 to 1,297,048 _RS05840 QEN71_RS05845: QEN71_RS05845 - lipoprotein-releasing ABC transporter permease subunit, at 1,297,355 to 1,298,608 _RS05845 QEN71_RS05850: QEN71_RS05850 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 1,298,601 to 1,299,344 _RS05850 QEN71_RS05855: QEN71_RS05855 - TatD family hydrolase, at 1,299,381 to 1,300,169 _RS05855 Position (kb) 1297 1298 1299Strain fitness (log2 ratio) -2 -1 0 1at 1296.579 kb on + strand, within QEN71_RS05840at 1296.580 kb on - strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.792 kb on + strand, within QEN71_RS05840at 1296.793 kb on - strand, within QEN71_RS05840at 1296.963 kb on + strandat 1296.963 kb on + strandat 1296.964 kb on - strandat 1296.964 kb on - strandat 1296.964 kb on - strandat 1297.008 kb on - strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.051 kb on + strandat 1297.052 kb on - strandat 1297.052 kb on - strandat 1297.119 kb on + strandat 1297.119 kb on + strandat 1297.119 kb on + strandat 1297.120 kb on - strandat 1297.120 kb on - strandat 1297.120 kb on - strandat 1297.242 kb on + strandat 1298.600 kb on + strandat 1299.318 kb on + strandat 1299.318 kb on + strandat 1299.319 kb on - strandat 1299.319 kb on - strandat 1299.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,296,579 + QEN71_RS05840 0.57 -1.5
1,296,580 - QEN71_RS05840 0.57 -1.6
1,296,792 + QEN71_RS05840 0.77 -1.1
1,296,792 + QEN71_RS05840 0.77 -1.5
1,296,792 + QEN71_RS05840 0.77 -1.6
1,296,793 - QEN71_RS05840 0.77 +0.8
1,296,963 + -0.5
1,296,963 + +0.5
1,296,964 - -0.3
1,296,964 - -2.1
1,296,964 - -0.8
1,297,008 - -0.8
1,297,051 + -0.2
1,297,051 + -0.2
1,297,051 + -0.6
1,297,051 + -0.5
1,297,051 + -0.8
1,297,051 + -0.9
1,297,052 - -0.9
1,297,052 - -1.9
1,297,119 + -0.7
1,297,119 + -0.0
1,297,119 + +1.1
1,297,120 - +0.0
1,297,120 - +1.3
1,297,120 - +0.5
1,297,242 + +0.4
1,298,600 + -0.8
1,299,318 + -0.1
1,299,318 + -0.3
1,299,319 - +0.5
1,299,319 - -2.1
1,299,393 - +0.4

Or see this region's nucleotide sequence