Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03210

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03200 and QEN71_RS03205 are separated by 221 nucleotidesQEN71_RS03205 and QEN71_RS03210 are separated by 86 nucleotidesQEN71_RS03210 and QEN71_RS03215 are separated by 79 nucleotidesQEN71_RS03215 and QEN71_RS03220 are separated by 83 nucleotides QEN71_RS03200: QEN71_RS03200 - oxygen-independent coproporphyrinogen III oxidase, at 713,509 to 714,912 _RS03200 QEN71_RS03205: QEN71_RS03205 - YkgJ family cysteine cluster protein, at 715,134 to 715,430 _RS03205 QEN71_RS03210: QEN71_RS03210 - DUF1439 domain-containing protein, at 715,517 to 716,110 _RS03210 QEN71_RS03215: QEN71_RS03215 - undecaprenyl-diphosphate phosphatase, at 716,190 to 717,026 _RS03215 QEN71_RS03220: QEN71_RS03220 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 717,110 to 717,889 _RS03220 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 714.585 kb on + strand, within QEN71_RS03200at 714.586 kb on - strand, within QEN71_RS03200at 714.586 kb on - strand, within QEN71_RS03200at 714.586 kb on - strand, within QEN71_RS03200at 714.586 kb on - strand, within QEN71_RS03200at 714.586 kb on - strand, within QEN71_RS03200at 714.635 kb on + strand, within QEN71_RS03200at 714.686 kb on + strand, within QEN71_RS03200at 714.686 kb on + strand, within QEN71_RS03200at 714.686 kb on + strand, within QEN71_RS03200at 714.686 kb on + strand, within QEN71_RS03200at 714.687 kb on - strand, within QEN71_RS03200at 714.687 kb on - strand, within QEN71_RS03200at 714.687 kb on - strand, within QEN71_RS03200at 714.722 kb on + strand, within QEN71_RS03200at 714.723 kb on - strand, within QEN71_RS03200at 714.773 kb on + strandat 714.827 kb on + strandat 714.827 kb on + strandat 714.828 kb on - strandat 714.828 kb on - strandat 714.828 kb on - strandat 714.848 kb on + strandat 714.848 kb on + strandat 714.848 kb on + strandat 714.848 kb on + strandat 714.848 kb on + strandat 714.849 kb on - strandat 715.002 kb on + strandat 715.002 kb on + strandat 715.002 kb on + strandat 715.002 kb on + strandat 715.002 kb on + strandat 715.002 kb on + strandat 715.003 kb on - strandat 715.003 kb on - strandat 715.003 kb on - strandat 715.016 kb on + strandat 715.017 kb on - strandat 715.017 kb on - strandat 715.031 kb on - strandat 715.031 kb on - strandat 715.110 kb on + strandat 715.111 kb on - strandat 715.118 kb on + strandat 715.119 kb on - strandat 715.119 kb on - strandat 715.119 kb on - strandat 715.119 kb on - strandat 715.267 kb on + strand, within QEN71_RS03205at 715.267 kb on + strand, within QEN71_RS03205at 715.267 kb on + strand, within QEN71_RS03205at 715.267 kb on + strand, within QEN71_RS03205at 715.268 kb on - strand, within QEN71_RS03205at 715.268 kb on - strand, within QEN71_RS03205at 715.345 kb on + strand, within QEN71_RS03205at 715.345 kb on + strand, within QEN71_RS03205at 715.345 kb on + strand, within QEN71_RS03205at 715.345 kb on + strand, within QEN71_RS03205at 715.346 kb on - strand, within QEN71_RS03205at 715.361 kb on + strand, within QEN71_RS03205at 715.361 kb on + strand, within QEN71_RS03205at 715.361 kb on + strand, within QEN71_RS03205at 715.361 kb on + strand, within QEN71_RS03205at 715.362 kb on - strand, within QEN71_RS03205at 715.362 kb on - strand, within QEN71_RS03205at 715.634 kb on - strand, within QEN71_RS03210at 715.680 kb on + strand, within QEN71_RS03210at 715.680 kb on + strand, within QEN71_RS03210at 715.680 kb on + strand, within QEN71_RS03210at 715.681 kb on - strand, within QEN71_RS03210at 715.681 kb on - strand, within QEN71_RS03210at 715.862 kb on + strand, within QEN71_RS03210at 715.862 kb on + strand, within QEN71_RS03210at 715.862 kb on + strand, within QEN71_RS03210at 715.862 kb on + strand, within QEN71_RS03210at 715.863 kb on - strand, within QEN71_RS03210at 715.940 kb on + strand, within QEN71_RS03210at 715.940 kb on + strand, within QEN71_RS03210at 715.940 kb on + strand, within QEN71_RS03210at 715.940 kb on + strand, within QEN71_RS03210at 715.940 kb on + strand, within QEN71_RS03210at 715.941 kb on - strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.942 kb on + strand, within QEN71_RS03210at 715.943 kb on - strand, within QEN71_RS03210at 715.943 kb on - strand, within QEN71_RS03210at 715.943 kb on - strand, within QEN71_RS03210at 715.943 kb on - strand, within QEN71_RS03210at 715.997 kb on + strand, within QEN71_RS03210at 715.997 kb on + strand, within QEN71_RS03210at 715.997 kb on + strand, within QEN71_RS03210at 715.997 kb on + strand, within QEN71_RS03210at 715.997 kb on + strand, within QEN71_RS03210at 715.998 kb on - strand, within QEN71_RS03210at 715.998 kb on - strand, within QEN71_RS03210at 715.998 kb on - strand, within QEN71_RS03210at 715.998 kb on - strand, within QEN71_RS03210at 716.006 kb on + strand, within QEN71_RS03210at 716.006 kb on + strand, within QEN71_RS03210at 716.006 kb on + strand, within QEN71_RS03210at 716.006 kb on + strand, within QEN71_RS03210at 716.006 kb on + strand, within QEN71_RS03210at 716.007 kb on - strand, within QEN71_RS03210at 716.048 kb on + strand, within QEN71_RS03210at 716.048 kb on + strand, within QEN71_RS03210at 716.048 kb on + strand, within QEN71_RS03210at 716.048 kb on + strand, within QEN71_RS03210at 716.049 kb on - strand, within QEN71_RS03210at 716.049 kb on - strand, within QEN71_RS03210at 716.060 kb on - strandat 716.074 kb on + strandat 716.074 kb on + strandat 716.085 kb on + strandat 716.997 kb on + strandat 716.997 kb on + strandat 716.997 kb on + strandat 716.998 kb on - strandat 717.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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714,585 + QEN71_RS03200 0.77 -0.4
714,586 - QEN71_RS03200 0.77 -1.0
714,586 - QEN71_RS03200 0.77 -0.4
714,586 - QEN71_RS03200 0.77 -1.4
714,586 - QEN71_RS03200 0.77 -0.4
714,586 - QEN71_RS03200 0.77 -0.4
714,635 + QEN71_RS03200 0.80 -0.4
714,686 + QEN71_RS03200 0.84 -0.7
714,686 + QEN71_RS03200 0.84 +1.1
714,686 + QEN71_RS03200 0.84 -0.9
714,686 + QEN71_RS03200 0.84 +0.2
714,687 - QEN71_RS03200 0.84 -0.7
714,687 - QEN71_RS03200 0.84 -1.7
714,687 - QEN71_RS03200 0.84 +0.9
714,722 + QEN71_RS03200 0.86 -0.1
714,723 - QEN71_RS03200 0.86 +0.3
714,773 + -0.2
714,827 + -2.0
714,827 + +0.4
714,828 - -1.6
714,828 - -0.9
714,828 - +0.5
714,848 + +0.4
714,848 + -1.4
714,848 + +1.2
714,848 + -0.7
714,848 + -0.2
714,849 - -0.4
715,002 + +0.3
715,002 + +0.7
715,002 + -1.9
715,002 + -1.5
715,002 + +0.7
715,002 + +0.5
715,003 - +0.4
715,003 - +0.5
715,003 - -0.1
715,016 + -0.3
715,017 - -0.1
715,017 - +1.4
715,031 - -1.2
715,031 - +0.1
715,110 + +1.3
715,111 - +0.9
715,118 + +0.6
715,119 - +0.7
715,119 - +0.5
715,119 - -0.1
715,119 - -2.1
715,267 + QEN71_RS03205 0.45 +0.3
715,267 + QEN71_RS03205 0.45 -0.6
715,267 + QEN71_RS03205 0.45 +1.8
715,267 + QEN71_RS03205 0.45 +0.1
715,268 - QEN71_RS03205 0.45 +1.0
715,268 - QEN71_RS03205 0.45 -0.9
715,345 + QEN71_RS03205 0.71 +0.1
715,345 + QEN71_RS03205 0.71 +0.4
715,345 + QEN71_RS03205 0.71 +1.2
715,345 + QEN71_RS03205 0.71 -1.4
715,346 - QEN71_RS03205 0.71 -1.5
715,361 + QEN71_RS03205 0.76 +0.7
715,361 + QEN71_RS03205 0.76 +1.5
715,361 + QEN71_RS03205 0.76 +0.2
715,361 + QEN71_RS03205 0.76 +0.9
715,362 - QEN71_RS03205 0.77 -0.3
715,362 - QEN71_RS03205 0.77 -2.2
715,634 - QEN71_RS03210 0.20 -1.3
715,680 + QEN71_RS03210 0.27 +0.0
715,680 + QEN71_RS03210 0.27 +0.6
715,680 + QEN71_RS03210 0.27 -1.1
715,681 - QEN71_RS03210 0.28 +0.3
715,681 - QEN71_RS03210 0.28 -0.7
715,862 + QEN71_RS03210 0.58 -2.4
715,862 + QEN71_RS03210 0.58 -0.7
715,862 + QEN71_RS03210 0.58 -1.0
715,862 + QEN71_RS03210 0.58 +0.3
715,863 - QEN71_RS03210 0.58 +0.1
715,940 + QEN71_RS03210 0.71 -0.1
715,940 + QEN71_RS03210 0.71 -0.6
715,940 + QEN71_RS03210 0.71 +0.5
715,940 + QEN71_RS03210 0.71 -2.5
715,940 + QEN71_RS03210 0.71 +0.2
715,941 - QEN71_RS03210 0.71 +1.6
715,942 + QEN71_RS03210 0.72 +0.2
715,942 + QEN71_RS03210 0.72 -2.0
715,942 + QEN71_RS03210 0.72 +0.1
715,942 + QEN71_RS03210 0.72 -0.1
715,942 + QEN71_RS03210 0.72 +0.0
715,942 + QEN71_RS03210 0.72 -0.1
715,942 + QEN71_RS03210 0.72 +0.4
715,943 - QEN71_RS03210 0.72 -2.2
715,943 - QEN71_RS03210 0.72 -0.2
715,943 - QEN71_RS03210 0.72 -2.1
715,943 - QEN71_RS03210 0.72 +0.3
715,997 + QEN71_RS03210 0.81 -1.4
715,997 + QEN71_RS03210 0.81 -1.0
715,997 + QEN71_RS03210 0.81 +0.1
715,997 + QEN71_RS03210 0.81 +0.2
715,997 + QEN71_RS03210 0.81 -1.2
715,998 - QEN71_RS03210 0.81 -0.7
715,998 - QEN71_RS03210 0.81 +0.7
715,998 - QEN71_RS03210 0.81 -0.1
715,998 - QEN71_RS03210 0.81 +0.5
716,006 + QEN71_RS03210 0.82 +0.4
716,006 + QEN71_RS03210 0.82 +0.4
716,006 + QEN71_RS03210 0.82 -0.8
716,006 + QEN71_RS03210 0.82 +1.0
716,006 + QEN71_RS03210 0.82 -1.6
716,007 - QEN71_RS03210 0.82 -1.1
716,048 + QEN71_RS03210 0.89 -0.1
716,048 + QEN71_RS03210 0.89 -0.0
716,048 + QEN71_RS03210 0.89 -0.4
716,048 + QEN71_RS03210 0.89 -0.9
716,049 - QEN71_RS03210 0.90 -0.5
716,049 - QEN71_RS03210 0.90 -1.2
716,060 - -0.5
716,074 + +0.3
716,074 + -0.4
716,085 + -0.2
716,997 + -0.4
716,997 + -0.7
716,997 + +1.4
716,998 - -0.0
717,097 - -0.3

Or see this region's nucleotide sequence