Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00935

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00930 and QEN71_RS00935 are separated by 403 nucleotidesQEN71_RS00935 and QEN71_RS00940 are separated by 33 nucleotides QEN71_RS00930: QEN71_RS00930 - Na+/H+ antiporter, at 208,851 to 210,515 _RS00930 QEN71_RS00935: QEN71_RS00935 - EAL domain-containing protein, at 210,919 to 212,193 _RS00935 QEN71_RS00940: QEN71_RS00940 - copper homeostasis protein CutC, at 212,227 to 212,916 _RS00940 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.211 kb on + strand, within QEN71_RS00930at 210.211 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.510 kb on - strandat 210.512 kb on - strandat 210.612 kb on - strandat 210.995 kb on - strandat 211.043 kb on + strandat 211.076 kb on - strand, within QEN71_RS00935at 211.369 kb on - strand, within QEN71_RS00935at 211.658 kb on + strand, within QEN71_RS00935at 211.658 kb on + strand, within QEN71_RS00935at 211.659 kb on - strand, within QEN71_RS00935at 211.659 kb on - strand, within QEN71_RS00935at 211.744 kb on + strand, within QEN71_RS00935at 211.745 kb on - strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.026 kb on + strand, within QEN71_RS00935at 212.027 kb on - strand, within QEN71_RS00935at 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.077 kb on + strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.078 kb on - strandat 212.322 kb on + strand, within QEN71_RS00940at 212.499 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.668 kb on - strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.761 kb on - strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.856 kb on + strandat 212.856 kb on + strandat 212.856 kb on + strandat 212.915 kb on - strandat 212.915 kb on - strandat 212.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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210,077 + QEN71_RS00930 0.74 -0.9
210,077 + QEN71_RS00930 0.74 +0.6
210,077 + QEN71_RS00930 0.74 -0.6
210,077 + QEN71_RS00930 0.74 +0.5
210,078 - QEN71_RS00930 0.74 -1.9
210,078 - QEN71_RS00930 0.74 +0.8
210,078 - QEN71_RS00930 0.74 +0.9
210,211 + QEN71_RS00930 0.82 +0.4
210,211 + QEN71_RS00930 0.82 -0.3
210,280 + QEN71_RS00930 0.86 +0.1
210,280 + QEN71_RS00930 0.86 +0.6
210,280 + QEN71_RS00930 0.86 -0.3
210,280 + QEN71_RS00930 0.86 +1.4
210,281 - QEN71_RS00930 0.86 -0.6
210,281 - QEN71_RS00930 0.86 +0.0
210,281 - QEN71_RS00930 0.86 +0.1
210,281 - QEN71_RS00930 0.86 -0.6
210,281 - QEN71_RS00930 0.86 -2.1
210,510 - -0.1
210,512 - -0.8
210,612 - +0.1
210,995 - +0.8
211,043 + -0.6
211,076 - QEN71_RS00935 0.12 +0.2
211,369 - QEN71_RS00935 0.35 -0.2
211,658 + QEN71_RS00935 0.58 -0.0
211,658 + QEN71_RS00935 0.58 -0.1
211,659 - QEN71_RS00935 0.58 +0.8
211,659 - QEN71_RS00935 0.58 +1.7
211,744 + QEN71_RS00935 0.65 +0.4
211,745 - QEN71_RS00935 0.65 -0.6
212,026 + QEN71_RS00935 0.87 +0.3
212,026 + QEN71_RS00935 0.87 +0.7
212,026 + QEN71_RS00935 0.87 +0.7
212,027 - QEN71_RS00935 0.87 -0.4
212,077 + -0.7
212,077 + -0.1
212,077 + -0.9
212,077 + +0.8
212,077 + -0.5
212,077 + +0.4
212,078 - +0.7
212,078 - -0.3
212,078 - -0.8
212,078 - -1.4
212,078 - +0.2
212,078 - -1.4
212,322 + QEN71_RS00940 0.14 +0.9
212,499 + QEN71_RS00940 0.39 -1.2
212,592 + QEN71_RS00940 0.53 -0.7
212,592 + QEN71_RS00940 0.53 -0.8
212,592 + QEN71_RS00940 0.53 +1.7
212,593 - QEN71_RS00940 0.53 -0.8
212,593 - QEN71_RS00940 0.53 -1.4
212,593 - QEN71_RS00940 0.53 -0.2
212,593 - QEN71_RS00940 0.53 -0.7
212,668 - QEN71_RS00940 0.64 -0.4
212,670 + QEN71_RS00940 0.64 +1.7
212,670 + QEN71_RS00940 0.64 +1.1
212,670 + QEN71_RS00940 0.64 +0.4
212,670 + QEN71_RS00940 0.64 -0.1
212,670 + QEN71_RS00940 0.64 -0.6
212,670 + QEN71_RS00940 0.64 -0.2
212,670 + QEN71_RS00940 0.64 -0.2
212,671 - QEN71_RS00940 0.64 -0.3
212,671 - QEN71_RS00940 0.64 +0.2
212,671 - QEN71_RS00940 0.64 +0.1
212,671 - QEN71_RS00940 0.64 +0.7
212,760 + QEN71_RS00940 0.77 +0.1
212,760 + QEN71_RS00940 0.77 -0.2
212,760 + QEN71_RS00940 0.77 -0.9
212,760 + QEN71_RS00940 0.77 -0.7
212,760 + QEN71_RS00940 0.77 -0.0
212,761 - QEN71_RS00940 0.77 -0.5
212,817 + QEN71_RS00940 0.86 +1.4
212,817 + QEN71_RS00940 0.86 +0.0
212,856 + -0.5
212,856 + -0.1
212,856 + -1.7
212,915 - +0.4
212,915 - -0.8
212,973 - +0.0

Or see this region's nucleotide sequence