Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18990 and LRK53_RS18995 are separated by 85 nucleotides LRK53_RS18995 and LRK53_RS19000 are separated by 117 nucleotides LRK53_RS19000 and LRK53_RS19005 are separated by 85 nucleotides LRK53_RS19005 and LRK53_RS19010 overlap by 28 nucleotides
LRK53_RS18990: LRK53_RS18990 - hypothetical protein, at 189,702 to 190,061
_RS18990
LRK53_RS18995: LRK53_RS18995 - hypothetical protein, at 190,147 to 190,500
_RS18995
LRK53_RS19000: LRK53_RS19000 - hypothetical protein, at 190,618 to 190,953
_RS19000
LRK53_RS19005: LRK53_RS19005 - phosphoadenosine phosphosulfate reductase family protein, at 191,039 to 192,148
_RS19005
LRK53_RS19010: LRK53_RS19010 - hypothetical protein, at 192,121 to 193,170
_RS19010
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.110 kb on + strand at 190.111 kb on - strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.210 kb on + strand, within LRK53_RS18995 at 190.210 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.412 kb on - strand, within LRK53_RS18995 at 190.517 kb on + strand at 190.517 kb on + strand at 190.517 kb on + strand at 190.664 kb on + strand, within LRK53_RS19000 at 190.665 kb on - strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.884 kb on + strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.951 kb on + strand at 190.952 kb on - strand at 190.952 kb on - strand at 190.952 kb on - strand at 191.001 kb on - strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.363 kb on + strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.364 kb on - strand, within LRK53_RS19005 at 191.451 kb on + strand, within LRK53_RS19005 at 191.451 kb on + strand, within LRK53_RS19005 at 191.452 kb on - strand, within LRK53_RS19005 at 191.675 kb on + strand, within LRK53_RS19005 at 191.777 kb on + strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 191.778 kb on - strand, within LRK53_RS19005 at 192.089 kb on + strand at 192.090 kb on - strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.122 kb on + strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.123 kb on - strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.146 kb on + strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.147 kb on - strand at 192.149 kb on + strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.150 kb on - strand at 192.245 kb on + strand, within LRK53_RS19010 at 192.245 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.388 kb on + strand, within LRK53_RS19010 at 192.389 kb on - strand, within LRK53_RS19010 at 192.479 kb on + strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.480 kb on - strand, within LRK53_RS19010 at 192.550 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.720 kb on + strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.721 kb on - strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.747 kb on + strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.748 kb on - strand, within LRK53_RS19010 at 192.797 kb on + strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.819 kb on - strand, within LRK53_RS19010 at 192.836 kb on + strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.858 kb on - strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.860 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.863 kb on + strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.864 kb on - strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.878 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.923 kb on + strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.924 kb on - strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.938 kb on + strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.939 kb on - strand, within LRK53_RS19010 at 192.962 kb on - strand, within LRK53_RS19010 at 193.011 kb on - strand, within LRK53_RS19010 at 193.139 kb on + strand at 193.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 190,059 + -0.2 190,059 + -0.6 190,059 + -2.0 190,059 + -2.1 190,059 + -2.2 190,060 - -1.2 190,060 - -0.1 190,060 - +1.5 190,060 - -1.4 190,110 + -0.6 190,111 - +1.4 190,114 + +0.4 190,114 + +1.6 190,114 + +0.2 190,114 + -0.1 190,114 + -1.0 190,114 + -1.0 190,114 + -1.3 190,115 - -1.3 190,115 - +0.9 190,115 - -1.3 190,115 - +0.8 190,115 - -1.1 190,115 - -0.1 190,115 - -2.8 190,115 - -1.8 190,115 - +0.9 190,115 - -2.3 190,115 - -1.4 190,115 - +0.4 190,115 - -0.1 190,115 - +0.0 190,115 - +0.0 190,115 - -0.8 190,115 - -0.3 190,115 - -0.3 190,115 - -1.8 190,115 - -2.3 190,210 + LRK53_RS18995 0.18 +0.6 190,210 + LRK53_RS18995 0.18 -1.2 190,295 + LRK53_RS18995 0.42 -1.0 190,295 + LRK53_RS18995 0.42 -1.0 190,412 - LRK53_RS18995 0.75 +0.2 190,517 + +0.9 190,517 + -0.4 190,517 + -0.8 190,664 + LRK53_RS19000 0.14 -0.1 190,665 - LRK53_RS19000 0.14 -1.6 190,882 + LRK53_RS19000 0.79 -1.1 190,882 + LRK53_RS19000 0.79 -0.6 190,882 + LRK53_RS19000 0.79 -0.8 190,882 + LRK53_RS19000 0.79 +0.5 190,882 + LRK53_RS19000 0.79 -1.0 190,882 + LRK53_RS19000 0.79 -2.3 190,882 + LRK53_RS19000 0.79 -2.0 190,882 + LRK53_RS19000 0.79 -1.1 190,883 - LRK53_RS19000 0.79 -1.6 190,883 - LRK53_RS19000 0.79 -0.8 190,883 - LRK53_RS19000 0.79 -1.1 190,883 - LRK53_RS19000 0.79 -0.9 190,883 - LRK53_RS19000 0.79 -0.4 190,883 - LRK53_RS19000 0.79 -0.8 190,883 - LRK53_RS19000 0.79 -0.4 190,883 - LRK53_RS19000 0.79 -1.1 190,884 + LRK53_RS19000 0.79 -1.0 190,885 - LRK53_RS19000 0.79 +0.6 190,885 - LRK53_RS19000 0.79 -1.7 190,885 - LRK53_RS19000 0.79 -0.1 190,885 - LRK53_RS19000 0.79 -0.6 190,885 - LRK53_RS19000 0.79 -1.7 190,885 - LRK53_RS19000 0.79 -1.5 190,951 + -0.6 190,952 - -1.3 190,952 - +0.2 190,952 - -0.8 191,001 - -0.6 191,038 + -1.0 191,038 + -2.9 191,038 + -2.3 191,038 + -1.3 191,038 + +0.3 191,038 + -0.4 191,038 + +0.8 191,038 + -0.4 191,039 - -0.9 191,039 - -0.8 191,039 - -1.1 191,039 - +0.5 191,039 - -1.4 191,039 - -1.5 191,363 + LRK53_RS19005 0.29 -1.3 191,363 + LRK53_RS19005 0.29 +0.5 191,363 + LRK53_RS19005 0.29 -0.1 191,363 + LRK53_RS19005 0.29 -1.0 191,364 - LRK53_RS19005 0.29 -0.8 191,364 - LRK53_RS19005 0.29 -0.3 191,451 + LRK53_RS19005 0.37 -0.1 191,451 + LRK53_RS19005 0.37 -1.9 191,452 - LRK53_RS19005 0.37 -2.0 191,675 + LRK53_RS19005 0.57 -0.9 191,777 + LRK53_RS19005 0.66 -1.5 191,778 - LRK53_RS19005 0.67 -0.6 191,778 - LRK53_RS19005 0.67 -1.6 191,778 - LRK53_RS19005 0.67 -0.9 191,778 - LRK53_RS19005 0.67 -0.5 192,089 + -1.0 192,090 - -0.1 192,122 + -1.0 192,122 + +1.6 192,122 + +0.5 192,122 + +0.6 192,123 - -0.9 192,123 - +0.5 192,123 - -1.3 192,123 - +1.2 192,123 - +0.1 192,123 - -2.1 192,146 + -0.6 192,146 + +1.3 192,146 + +0.4 192,147 - -0.5 192,147 - -0.4 192,147 - -0.1 192,147 - -0.4 192,149 + -1.0 192,150 - +0.6 192,150 - -2.7 192,150 - -1.0 192,245 + LRK53_RS19010 0.12 +0.2 192,245 + LRK53_RS19010 0.12 -1.4 192,388 + LRK53_RS19010 0.25 -0.8 192,388 + LRK53_RS19010 0.25 +0.2 192,389 - LRK53_RS19010 0.26 -0.4 192,479 + LRK53_RS19010 0.34 +1.8 192,480 - LRK53_RS19010 0.34 -1.0 192,480 - LRK53_RS19010 0.34 -1.7 192,550 + LRK53_RS19010 0.41 -0.6 192,720 + LRK53_RS19010 0.57 -0.3 192,720 + LRK53_RS19010 0.57 -1.5 192,720 + LRK53_RS19010 0.57 +0.2 192,721 - LRK53_RS19010 0.57 -1.4 192,721 - LRK53_RS19010 0.57 +1.8 192,747 + LRK53_RS19010 0.60 -3.0 192,747 + LRK53_RS19010 0.60 -0.3 192,747 + LRK53_RS19010 0.60 -1.0 192,748 - LRK53_RS19010 0.60 +1.2 192,748 - LRK53_RS19010 0.60 -0.5 192,797 + LRK53_RS19010 0.64 -0.1 192,819 - LRK53_RS19010 0.66 -0.7 192,819 - LRK53_RS19010 0.66 -0.2 192,836 + LRK53_RS19010 0.68 -1.3 192,858 - LRK53_RS19010 0.70 -0.1 192,858 - LRK53_RS19010 0.70 +0.0 192,860 + LRK53_RS19010 0.70 +1.3 192,860 + LRK53_RS19010 0.70 +0.4 192,863 + LRK53_RS19010 0.71 +0.9 192,863 + LRK53_RS19010 0.71 +0.2 192,863 + LRK53_RS19010 0.71 -1.9 192,864 - LRK53_RS19010 0.71 -1.9 192,864 - LRK53_RS19010 0.71 +1.3 192,878 + LRK53_RS19010 0.72 -2.6 192,878 + LRK53_RS19010 0.72 +0.4 192,923 + LRK53_RS19010 0.76 -1.3 192,923 + LRK53_RS19010 0.76 -0.4 192,923 + LRK53_RS19010 0.76 -2.3 192,923 + LRK53_RS19010 0.76 -0.4 192,923 + LRK53_RS19010 0.76 +0.6 192,923 + LRK53_RS19010 0.76 +0.6 192,924 - LRK53_RS19010 0.76 +1.0 192,924 - LRK53_RS19010 0.76 -2.6 192,924 - LRK53_RS19010 0.76 +0.1 192,924 - LRK53_RS19010 0.76 -0.7 192,924 - LRK53_RS19010 0.76 -0.6 192,924 - LRK53_RS19010 0.76 -1.6 192,924 - LRK53_RS19010 0.76 -0.6 192,924 - LRK53_RS19010 0.76 -2.3 192,924 - LRK53_RS19010 0.76 -0.7 192,938 + LRK53_RS19010 0.78 +0.9 192,938 + LRK53_RS19010 0.78 -2.1 192,939 - LRK53_RS19010 0.78 -0.2 192,939 - LRK53_RS19010 0.78 -0.8 192,939 - LRK53_RS19010 0.78 +0.1 192,939 - LRK53_RS19010 0.78 -1.6 192,939 - LRK53_RS19010 0.78 -0.6 192,939 - LRK53_RS19010 0.78 +0.6 192,939 - LRK53_RS19010 0.78 +1.6 192,962 - LRK53_RS19010 0.80 +0.6 193,011 - LRK53_RS19010 0.85 -1.7 193,139 + +0.1 193,140 - +0.1
Or see this region's nucleotide sequence