Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18800

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18795 and LRK53_RS18800 overlap by 8 nucleotidesLRK53_RS18800 and LRK53_RS18805 are separated by 1 nucleotides LRK53_RS18795: LRK53_RS18795 - TraU family protein, at 150,681 to 151,763 _RS18795 LRK53_RS18800: LRK53_RS18800 - carbon storage regulator, at 151,756 to 151,959 _RS18800 LRK53_RS18805: LRK53_RS18805 - hypothetical protein, at 151,961 to 153,238 _RS18805 Position (kb) 151 152Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 150.841 kb on + strand, within LRK53_RS18795at 150.841 kb on + strand, within LRK53_RS18795at 150.841 kb on + strand, within LRK53_RS18795at 150.857 kb on + strand, within LRK53_RS18795at 150.898 kb on + strand, within LRK53_RS18795at 151.039 kb on + strand, within LRK53_RS18795at 151.039 kb on + strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.040 kb on - strand, within LRK53_RS18795at 151.141 kb on + strand, within LRK53_RS18795at 151.141 kb on + strand, within LRK53_RS18795at 151.141 kb on + strand, within LRK53_RS18795at 151.141 kb on + strand, within LRK53_RS18795at 151.141 kb on + strand, within LRK53_RS18795at 151.189 kb on + strand, within LRK53_RS18795at 151.189 kb on + strand, within LRK53_RS18795at 151.189 kb on + strand, within LRK53_RS18795at 151.189 kb on + strand, within LRK53_RS18795at 151.189 kb on + strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.190 kb on - strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.288 kb on + strand, within LRK53_RS18795at 151.289 kb on - strand, within LRK53_RS18795at 151.289 kb on - strand, within LRK53_RS18795at 151.289 kb on - strand, within LRK53_RS18795at 151.289 kb on - strand, within LRK53_RS18795at 151.291 kb on + strand, within LRK53_RS18795at 151.292 kb on - strand, within LRK53_RS18795at 151.333 kb on + strand, within LRK53_RS18795at 151.333 kb on + strand, within LRK53_RS18795at 151.334 kb on - strand, within LRK53_RS18795at 151.334 kb on - strand, within LRK53_RS18795at 151.457 kb on - strand, within LRK53_RS18795at 151.469 kb on + strand, within LRK53_RS18795at 151.688 kb on + strandat 151.757 kb on + strandat 151.757 kb on + strandat 151.758 kb on - strandat 151.909 kb on + strand, within LRK53_RS18800at 151.909 kb on + strand, within LRK53_RS18800at 151.910 kb on - strand, within LRK53_RS18800at 151.910 kb on - strand, within LRK53_RS18800at 151.911 kb on + strand, within LRK53_RS18800at 151.912 kb on - strand, within LRK53_RS18800at 151.912 kb on - strand, within LRK53_RS18800at 151.912 kb on - strand, within LRK53_RS18800at 151.912 kb on - strand, within LRK53_RS18800at 151.949 kb on - strandat 152.079 kb on + strandat 152.079 kb on + strandat 152.079 kb on + strandat 152.079 kb on + strandat 152.079 kb on + strandat 152.080 kb on - strandat 152.080 kb on - strandat 152.080 kb on - strandat 152.080 kb on - strandat 152.080 kb on - strandat 152.095 kb on + strand, within LRK53_RS18805at 152.115 kb on + strand, within LRK53_RS18805at 152.232 kb on + strand, within LRK53_RS18805at 152.281 kb on + strand, within LRK53_RS18805at 152.281 kb on + strand, within LRK53_RS18805at 152.281 kb on + strand, within LRK53_RS18805at 152.281 kb on + strand, within LRK53_RS18805at 152.506 kb on - strand, within LRK53_RS18805at 152.724 kb on + strand, within LRK53_RS18805at 152.724 kb on + strand, within LRK53_RS18805at 152.725 kb on - strand, within LRK53_RS18805at 152.814 kb on + strand, within LRK53_RS18805at 152.814 kb on + strand, within LRK53_RS18805at 152.814 kb on + strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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150,841 + LRK53_RS18795 0.15 +1.5
150,841 + LRK53_RS18795 0.15 -0.4
150,841 + LRK53_RS18795 0.15 +0.0
150,857 + LRK53_RS18795 0.16 -1.2
150,898 + LRK53_RS18795 0.20 -0.4
151,039 + LRK53_RS18795 0.33 -0.3
151,039 + LRK53_RS18795 0.33 -0.2
151,040 - LRK53_RS18795 0.33 +1.1
151,040 - LRK53_RS18795 0.33 +1.2
151,040 - LRK53_RS18795 0.33 -1.2
151,040 - LRK53_RS18795 0.33 -0.4
151,040 - LRK53_RS18795 0.33 +0.4
151,040 - LRK53_RS18795 0.33 -0.8
151,141 + LRK53_RS18795 0.42 -0.2
151,141 + LRK53_RS18795 0.42 -0.0
151,141 + LRK53_RS18795 0.42 -0.6
151,141 + LRK53_RS18795 0.42 -0.4
151,141 + LRK53_RS18795 0.42 +0.2
151,189 + LRK53_RS18795 0.47 -2.7
151,189 + LRK53_RS18795 0.47 +0.7
151,189 + LRK53_RS18795 0.47 -0.0
151,189 + LRK53_RS18795 0.47 -0.2
151,189 + LRK53_RS18795 0.47 -1.8
151,190 - LRK53_RS18795 0.47 -0.9
151,190 - LRK53_RS18795 0.47 -1.0
151,190 - LRK53_RS18795 0.47 -0.9
151,190 - LRK53_RS18795 0.47 -2.2
151,190 - LRK53_RS18795 0.47 -1.4
151,190 - LRK53_RS18795 0.47 +0.3
151,190 - LRK53_RS18795 0.47 -3.0
151,190 - LRK53_RS18795 0.47 -0.9
151,190 - LRK53_RS18795 0.47 +0.7
151,288 + LRK53_RS18795 0.56 -1.1
151,288 + LRK53_RS18795 0.56 -1.8
151,288 + LRK53_RS18795 0.56 -0.6
151,288 + LRK53_RS18795 0.56 +1.1
151,288 + LRK53_RS18795 0.56 -0.7
151,288 + LRK53_RS18795 0.56 +0.3
151,288 + LRK53_RS18795 0.56 +0.1
151,289 - LRK53_RS18795 0.56 -1.0
151,289 - LRK53_RS18795 0.56 +0.1
151,289 - LRK53_RS18795 0.56 -0.4
151,289 - LRK53_RS18795 0.56 -0.3
151,291 + LRK53_RS18795 0.56 -1.8
151,292 - LRK53_RS18795 0.56 -0.0
151,333 + LRK53_RS18795 0.60 +0.6
151,333 + LRK53_RS18795 0.60 -0.7
151,334 - LRK53_RS18795 0.60 -0.4
151,334 - LRK53_RS18795 0.60 -0.9
151,457 - LRK53_RS18795 0.72 -1.1
151,469 + LRK53_RS18795 0.73 -1.9
151,688 + -0.2
151,757 + -2.0
151,757 + -0.4
151,758 - -1.6
151,909 + LRK53_RS18800 0.75 +0.6
151,909 + LRK53_RS18800 0.75 +1.8
151,910 - LRK53_RS18800 0.75 -1.5
151,910 - LRK53_RS18800 0.75 -0.4
151,911 + LRK53_RS18800 0.76 -0.7
151,912 - LRK53_RS18800 0.76 -0.6
151,912 - LRK53_RS18800 0.76 -0.2
151,912 - LRK53_RS18800 0.76 -2.4
151,912 - LRK53_RS18800 0.76 +0.1
151,949 - -0.7
152,079 + -0.7
152,079 + -1.9
152,079 + -1.5
152,079 + -0.5
152,079 + +2.6
152,080 - -1.2
152,080 - +0.3
152,080 - -2.6
152,080 - -2.2
152,080 - -1.0
152,095 + LRK53_RS18805 0.10 -0.5
152,115 + LRK53_RS18805 0.12 +0.9
152,232 + LRK53_RS18805 0.21 -3.2
152,281 + LRK53_RS18805 0.25 -1.2
152,281 + LRK53_RS18805 0.25 -1.1
152,281 + LRK53_RS18805 0.25 +0.6
152,281 + LRK53_RS18805 0.25 -1.2
152,506 - LRK53_RS18805 0.43 -1.2
152,724 + LRK53_RS18805 0.60 -0.6
152,724 + LRK53_RS18805 0.60 +0.3
152,725 - LRK53_RS18805 0.60 +0.1
152,814 + LRK53_RS18805 0.67 -1.9
152,814 + LRK53_RS18805 0.67 -1.0
152,814 + LRK53_RS18805 0.67 -0.3
152,863 - LRK53_RS18805 0.71 -1.0
152,863 - LRK53_RS18805 0.71 +0.0
152,863 - LRK53_RS18805 0.71 +0.7
152,871 + LRK53_RS18805 0.71 +0.1
152,871 + LRK53_RS18805 0.71 -0.6
152,871 + LRK53_RS18805 0.71 +0.5
152,875 + LRK53_RS18805 0.72 -1.6
152,875 + LRK53_RS18805 0.72 +0.3
152,875 + LRK53_RS18805 0.72 +0.2
152,875 + LRK53_RS18805 0.72 -0.6
152,875 + LRK53_RS18805 0.72 +0.3
152,876 - LRK53_RS18805 0.72 -0.7
152,876 - LRK53_RS18805 0.72 -0.4
152,876 - LRK53_RS18805 0.72 +0.6
152,876 - LRK53_RS18805 0.72 +0.1
152,876 - LRK53_RS18805 0.72 -1.9
152,876 - LRK53_RS18805 0.72 -2.6

Or see this region's nucleotide sequence