Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18325 and LRK53_RS18330 overlap by 24 nucleotides LRK53_RS18330 and LRK53_RS18335 are separated by 98 nucleotides LRK53_RS18335 and LRK53_RS18340 are separated by 184 nucleotides LRK53_RS18340 and LRK53_RS18345 are separated by 84 nucleotides LRK53_RS18345 and LRK53_RS18350 are separated by 104 nucleotides
LRK53_RS18325: LRK53_RS18325 - hypothetical protein, at 40,718 to 40,999
_RS18325
LRK53_RS18330: LRK53_RS18330 - hypothetical protein, at 40,976 to 41,212
_RS18330
LRK53_RS18335: LRK53_RS18335 - hypothetical protein, at 41,311 to 41,589
_RS18335
LRK53_RS18340: LRK53_RS18340 - hypothetical protein, at 41,774 to 42,433
_RS18340
LRK53_RS18345: LRK53_RS18345 - hypothetical protein, at 42,518 to 43,174
_RS18345
LRK53_RS18350: LRK53_RS18350 - ATP-binding protein, at 43,279 to 44,907
_RS18350
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.944 kb on - strand, within LRK53_RS18325 at 40.966 kb on - strand, within LRK53_RS18325 at 40.977 kb on + strand at 41.243 kb on + strand at 41.243 kb on + strand at 41.273 kb on + strand at 41.273 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.328 kb on + strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.413 kb on + strand, within LRK53_RS18335 at 41.413 kb on + strand, within LRK53_RS18335 at 41.413 kb on + strand, within LRK53_RS18335 at 41.414 kb on - strand, within LRK53_RS18335 at 41.414 kb on - strand, within LRK53_RS18335 at 41.414 kb on - strand, within LRK53_RS18335 at 41.414 kb on - strand, within LRK53_RS18335 at 41.414 kb on - strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.539 kb on + strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.540 kb on - strand, within LRK53_RS18335 at 41.543 kb on - strand, within LRK53_RS18335 at 41.677 kb on + strand at 41.678 kb on - strand at 41.784 kb on + strand at 41.865 kb on + strand, within LRK53_RS18340 at 41.866 kb on - strand, within LRK53_RS18340 at 41.866 kb on - strand, within LRK53_RS18340 at 41.866 kb on - strand, within LRK53_RS18340 at 41.984 kb on + strand, within LRK53_RS18340 at 41.985 kb on - strand, within LRK53_RS18340 at 42.036 kb on - strand, within LRK53_RS18340 at 42.036 kb on - strand, within LRK53_RS18340 at 42.086 kb on + strand, within LRK53_RS18340 at 42.086 kb on + strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.087 kb on - strand, within LRK53_RS18340 at 42.185 kb on + strand, within LRK53_RS18340 at 42.323 kb on + strand, within LRK53_RS18340 at 42.323 kb on + strand, within LRK53_RS18340 at 42.323 kb on + strand, within LRK53_RS18340 at 42.323 kb on + strand, within LRK53_RS18340 at 42.323 kb on + strand, within LRK53_RS18340 at 42.324 kb on - strand, within LRK53_RS18340 at 42.324 kb on - strand, within LRK53_RS18340 at 42.324 kb on - strand, within LRK53_RS18340 at 42.324 kb on - strand, within LRK53_RS18340 at 42.324 kb on - strand, within LRK53_RS18340 at 42.431 kb on + strand at 42.432 kb on - strand at 42.536 kb on + strand at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.617 kb on + strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.618 kb on - strand, within LRK53_RS18345 at 42.630 kb on + strand, within LRK53_RS18345 at 42.631 kb on - strand, within LRK53_RS18345 at 42.720 kb on + strand, within LRK53_RS18345 at 42.793 kb on + strand, within LRK53_RS18345 at 42.794 kb on - strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.836 kb on + strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.837 kb on - strand, within LRK53_RS18345 at 42.844 kb on + strand, within LRK53_RS18345 at 42.844 kb on + strand, within LRK53_RS18345 at 42.845 kb on - strand, within LRK53_RS18345 at 42.845 kb on - strand, within LRK53_RS18345 at 42.848 kb on + strand, within LRK53_RS18345 at 42.848 kb on + strand, within LRK53_RS18345 at 42.848 kb on + strand, within LRK53_RS18345 at 42.849 kb on - strand, within LRK53_RS18345 at 42.997 kb on + strand, within LRK53_RS18345 at 42.997 kb on + strand, within LRK53_RS18345 at 42.997 kb on + strand, within LRK53_RS18345 at 42.997 kb on + strand, within LRK53_RS18345 at 42.997 kb on + strand, within LRK53_RS18345 at 42.998 kb on - strand, within LRK53_RS18345 at 42.998 kb on - strand, within LRK53_RS18345 at 42.998 kb on - strand, within LRK53_RS18345 at 42.998 kb on - strand, within LRK53_RS18345 at 42.998 kb on - strand, within LRK53_RS18345 at 43.001 kb on + strand, within LRK53_RS18345 at 43.001 kb on + strand, within LRK53_RS18345 at 43.001 kb on + strand, within LRK53_RS18345 at 43.001 kb on + strand, within LRK53_RS18345 at 43.001 kb on + strand, within LRK53_RS18345 at 43.002 kb on - strand, within LRK53_RS18345 at 43.002 kb on - strand, within LRK53_RS18345 at 43.002 kb on - strand, within LRK53_RS18345 at 43.131 kb on - strand at 43.172 kb on + strand at 43.172 kb on + strand at 43.173 kb on - strand at 43.173 kb on - strand at 43.265 kb on + strand at 43.265 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.271 kb on + strand at 43.272 kb on - strand at 43.272 kb on - strand at 43.272 kb on - strand at 43.272 kb on - strand at 43.284 kb on + strand at 43.284 kb on + strand at 43.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 40,944 - LRK53_RS18325 0.80 -0.1 40,966 - LRK53_RS18325 0.88 +1.5 40,977 + -0.8 41,243 + -1.7 41,243 + +1.2 41,273 + -0.3 41,273 + +2.2 41,328 + -1.5 41,328 + +0.3 41,328 + -0.1 41,328 + +0.2 41,328 + +1.0 41,328 + -0.8 41,328 + -1.3 41,328 + +0.2 41,328 + -1.3 41,329 - +0.3 41,329 - -1.1 41,329 - +1.2 41,329 - +0.2 41,329 - -0.5 41,329 - +0.6 41,413 + LRK53_RS18335 0.37 -0.4 41,413 + LRK53_RS18335 0.37 -0.4 41,413 + LRK53_RS18335 0.37 -1.1 41,414 - LRK53_RS18335 0.37 -0.6 41,414 - LRK53_RS18335 0.37 +0.2 41,414 - LRK53_RS18335 0.37 +0.0 41,414 - LRK53_RS18335 0.37 +1.4 41,414 - LRK53_RS18335 0.37 -2.3 41,539 + LRK53_RS18335 0.82 -1.3 41,539 + LRK53_RS18335 0.82 +0.7 41,539 + LRK53_RS18335 0.82 -0.3 41,539 + LRK53_RS18335 0.82 -0.8 41,539 + LRK53_RS18335 0.82 +0.9 41,539 + LRK53_RS18335 0.82 -0.8 41,540 - LRK53_RS18335 0.82 +0.9 41,540 - LRK53_RS18335 0.82 -2.1 41,540 - LRK53_RS18335 0.82 +0.6 41,540 - LRK53_RS18335 0.82 +1.2 41,540 - LRK53_RS18335 0.82 -1.4 41,540 - LRK53_RS18335 0.82 -0.8 41,540 - LRK53_RS18335 0.82 +0.4 41,540 - LRK53_RS18335 0.82 -2.2 41,540 - LRK53_RS18335 0.82 -0.8 41,540 - LRK53_RS18335 0.82 -0.9 41,543 - LRK53_RS18335 0.83 -1.1 41,677 + -2.4 41,678 - -0.9 41,784 + -2.1 41,865 + LRK53_RS18340 0.14 -0.1 41,866 - LRK53_RS18340 0.14 -1.8 41,866 - LRK53_RS18340 0.14 -0.1 41,866 - LRK53_RS18340 0.14 +1.5 41,984 + LRK53_RS18340 0.32 -0.4 41,985 - LRK53_RS18340 0.32 -1.3 42,036 - LRK53_RS18340 0.40 -1.0 42,036 - LRK53_RS18340 0.40 -0.8 42,086 + LRK53_RS18340 0.47 +0.5 42,086 + LRK53_RS18340 0.47 -0.8 42,087 - LRK53_RS18340 0.47 +0.1 42,087 - LRK53_RS18340 0.47 -1.3 42,087 - LRK53_RS18340 0.47 -0.6 42,087 - LRK53_RS18340 0.47 -0.8 42,087 - LRK53_RS18340 0.47 -0.4 42,087 - LRK53_RS18340 0.47 +0.2 42,087 - LRK53_RS18340 0.47 -1.5 42,087 - LRK53_RS18340 0.47 -1.1 42,185 + LRK53_RS18340 0.62 -1.4 42,323 + LRK53_RS18340 0.83 -3.4 42,323 + LRK53_RS18340 0.83 +1.0 42,323 + LRK53_RS18340 0.83 -2.0 42,323 + LRK53_RS18340 0.83 -1.4 42,323 + LRK53_RS18340 0.83 -2.1 42,324 - LRK53_RS18340 0.83 -1.2 42,324 - LRK53_RS18340 0.83 -1.5 42,324 - LRK53_RS18340 0.83 +0.0 42,324 - LRK53_RS18340 0.83 -0.4 42,324 - LRK53_RS18340 0.83 -1.0 42,431 + -0.1 42,432 - -1.1 42,536 + -0.1 42,617 + LRK53_RS18345 0.15 -2.1 42,617 + LRK53_RS18345 0.15 -0.2 42,617 + LRK53_RS18345 0.15 +2.2 42,617 + LRK53_RS18345 0.15 +0.4 42,617 + LRK53_RS18345 0.15 +1.0 42,617 + LRK53_RS18345 0.15 -0.4 42,617 + LRK53_RS18345 0.15 +0.7 42,617 + LRK53_RS18345 0.15 -0.8 42,617 + LRK53_RS18345 0.15 -0.8 42,617 + LRK53_RS18345 0.15 -1.1 42,617 + LRK53_RS18345 0.15 -0.4 42,617 + LRK53_RS18345 0.15 +1.7 42,618 - LRK53_RS18345 0.15 -1.6 42,618 - LRK53_RS18345 0.15 -0.4 42,618 - LRK53_RS18345 0.15 +0.8 42,618 - LRK53_RS18345 0.15 -0.8 42,618 - LRK53_RS18345 0.15 +2.2 42,618 - LRK53_RS18345 0.15 -0.6 42,618 - LRK53_RS18345 0.15 -1.4 42,630 + LRK53_RS18345 0.17 -0.6 42,631 - LRK53_RS18345 0.17 -1.1 42,720 + LRK53_RS18345 0.31 +1.5 42,793 + LRK53_RS18345 0.42 -0.6 42,794 - LRK53_RS18345 0.42 -1.3 42,836 + LRK53_RS18345 0.48 -0.4 42,836 + LRK53_RS18345 0.48 -0.0 42,836 + LRK53_RS18345 0.48 -1.4 42,836 + LRK53_RS18345 0.48 -1.9 42,836 + LRK53_RS18345 0.48 +1.4 42,836 + LRK53_RS18345 0.48 -0.7 42,836 + LRK53_RS18345 0.48 -1.5 42,836 + LRK53_RS18345 0.48 +0.2 42,837 - LRK53_RS18345 0.49 -1.1 42,837 - LRK53_RS18345 0.49 -1.1 42,837 - LRK53_RS18345 0.49 +0.2 42,837 - LRK53_RS18345 0.49 -1.6 42,837 - LRK53_RS18345 0.49 +0.9 42,837 - LRK53_RS18345 0.49 +0.1 42,837 - LRK53_RS18345 0.49 -1.3 42,844 + LRK53_RS18345 0.50 +1.5 42,844 + LRK53_RS18345 0.50 +0.3 42,845 - LRK53_RS18345 0.50 -0.3 42,845 - LRK53_RS18345 0.50 +0.4 42,848 + LRK53_RS18345 0.50 -0.8 42,848 + LRK53_RS18345 0.50 -0.1 42,848 + LRK53_RS18345 0.50 +0.2 42,849 - LRK53_RS18345 0.50 -0.6 42,997 + LRK53_RS18345 0.73 +0.5 42,997 + LRK53_RS18345 0.73 -1.0 42,997 + LRK53_RS18345 0.73 -2.1 42,997 + LRK53_RS18345 0.73 -1.0 42,997 + LRK53_RS18345 0.73 -0.1 42,998 - LRK53_RS18345 0.73 -1.9 42,998 - LRK53_RS18345 0.73 -1.8 42,998 - LRK53_RS18345 0.73 -1.3 42,998 - LRK53_RS18345 0.73 -1.0 42,998 - LRK53_RS18345 0.73 +0.3 43,001 + LRK53_RS18345 0.74 -1.3 43,001 + LRK53_RS18345 0.74 -0.6 43,001 + LRK53_RS18345 0.74 -0.9 43,001 + LRK53_RS18345 0.74 -0.8 43,001 + LRK53_RS18345 0.74 -1.4 43,002 - LRK53_RS18345 0.74 -0.2 43,002 - LRK53_RS18345 0.74 -1.1 43,002 - LRK53_RS18345 0.74 -1.4 43,131 - -0.5 43,172 + -1.8 43,172 + -0.4 43,173 - -1.1 43,173 - -0.4 43,265 + +0.9 43,265 + -1.6 43,271 + -1.2 43,271 + -0.6 43,271 + -0.3 43,271 + -0.6 43,271 + +1.5 43,271 + -1.9 43,271 + -1.1 43,271 + +0.9 43,272 - -0.1 43,272 - -1.5 43,272 - -0.3 43,272 - -0.1 43,284 + -0.4 43,284 + -0.1 43,360 + -0.8
Or see this region's nucleotide sequence