Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16625

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Aluminum chloride 1mM
3,659,893	+		LRK53_RS16615	0.82	+1.4
3,659,893	+		LRK53_RS16615	0.82	+0.1
3,659,893	+		LRK53_RS16615	0.82	-0.2
3,659,894	-		LRK53_RS16615	0.82	-0.8
3,659,894	-		LRK53_RS16615	0.82	+0.7
3,659,989	+		LRK53_RS16615	0.88	-0.2
3,659,989	+		LRK53_RS16615	0.88	-0.6
3,659,989	+		LRK53_RS16615	0.88	+0.0
3,659,989	+		LRK53_RS16615	0.88	-0.1
3,659,989	+		LRK53_RS16615	0.88	+0.8
3,659,989	+		LRK53_RS16615	0.88	+0.9
3,659,989	+		LRK53_RS16615	0.88	-1.7
3,659,989	+		LRK53_RS16615	0.88	+0.8
3,659,989	+		LRK53_RS16615	0.88	+0.0
3,659,989	+		LRK53_RS16615	0.88	-1.1
3,659,989	+		LRK53_RS16615	0.88	-0.7
3,659,989	+		LRK53_RS16615	0.88	-0.9
3,659,989	+		LRK53_RS16615	0.88	-2.7
3,659,990	-		LRK53_RS16615	0.88	-0.6
3,659,990	-		LRK53_RS16615	0.88	-0.1
3,659,990	-		LRK53_RS16615	0.88	-0.8
3,659,990	-		LRK53_RS16615	0.88	+1.0
3,659,990	-		LRK53_RS16615	0.88	-0.6
3,659,990	-		LRK53_RS16615	0.88	-1.4
3,659,990	-		LRK53_RS16615	0.88	-0.8
3,660,067	+				+0.0
3,660,067	+				-0.8
3,660,067	+				-0.4
3,660,068	-				+0.0
3,660,068	-				-1.4
3,660,068	-				+1.7
3,660,082	+				+0.7
3,660,082	+				+1.0
3,660,082	+				+1.0
3,660,082	+				-0.9
3,660,083	-				+2.1
3,660,083	-				-0.7
3,660,083	-				-0.2
3,660,083	-				-0.4
3,660,083	-				+0.6
3,660,154	+				+0.6
3,660,288	+				+1.6
3,660,288	+				-0.1
3,660,288	+				+0.4
3,660,288	+				-1.0
3,660,288	+				-1.3
3,660,288	+				+0.9
3,660,288	+				+0.2
3,660,289	-				+0.5
3,660,289	-				-0.6
3,660,289	-				-0.6
3,660,289	-				+0.6
3,660,289	-				+0.3
3,660,289	-				-0.2
3,660,297	+				+0.3
3,660,297	+				-2.1
3,660,297	+				+0.0
3,660,297	+				-0.2
3,660,297	+				+0.5
3,660,297	+				-0.6
3,660,297	+				-2.2
3,660,297	+				+1.3
3,660,298	-				+0.2
3,660,298	-				-2.7
3,660,300	+				+1.3
3,660,300	+				-0.8
3,660,300	+				-1.0
3,660,300	+				+0.2
3,660,300	+				-1.4
3,660,301	-				-1.1
3,660,301	-				-0.5
3,660,301	-				-0.7
3,660,301	-				-0.0
3,660,301	-				-2.0
3,660,301	-				+1.6
3,660,301	-				-0.5
3,660,301	-				-1.4
3,660,301	-				-0.8
3,660,301	-				+0.5
3,660,301	-				+0.6
3,660,429	+		LRK53_RS16620	0.37	-0.2
3,660,429	+		LRK53_RS16620	0.37	-1.1
3,660,450	+		LRK53_RS16620	0.42	-0.6
3,660,450	+		LRK53_RS16620	0.42	-0.8
3,660,450	+		LRK53_RS16620	0.42	+0.5
3,660,450	+		LRK53_RS16620	0.42	-0.3
3,660,451	-		LRK53_RS16620	0.43	+0.6
3,660,451	-		LRK53_RS16620	0.43	-1.5
3,660,451	-		LRK53_RS16620	0.43	-0.2
3,660,451	-		LRK53_RS16620	0.43	-0.1
3,660,451	-		LRK53_RS16620	0.43	-1.5
3,660,451	-		LRK53_RS16620	0.43	-1.2
3,660,451	-		LRK53_RS16620	0.43	-1.2
3,660,526	+		LRK53_RS16620	0.62	-1.2
3,660,526	+		LRK53_RS16620	0.62	-1.5
3,660,526	+		LRK53_RS16620	0.62	-0.8
3,660,526	+		LRK53_RS16620	0.62	-0.4
3,660,526	+		LRK53_RS16620	0.62	+0.7
3,660,526	+		LRK53_RS16620	0.62	-2.3
3,660,526	+		LRK53_RS16620	0.62	-0.5
3,660,526	+		LRK53_RS16620	0.62	-0.2
3,660,527	-		LRK53_RS16620	0.62	-0.5
3,660,527	-		LRK53_RS16620	0.62	-1.3
3,660,527	-		LRK53_RS16620	0.62	-0.6
3,660,527	-		LRK53_RS16620	0.62	-0.2
3,660,527	-		LRK53_RS16620	0.62	-1.2
3,660,527	-		LRK53_RS16620	0.62	-0.4
3,660,527	-		LRK53_RS16620	0.62	+0.4
3,660,527	-		LRK53_RS16620	0.62	-1.5
3,660,527	-		LRK53_RS16620	0.62	+1.0
3,660,527	-		LRK53_RS16620	0.62	-2.4
3,660,527	-		LRK53_RS16620	0.62	-2.4
3,660,527	-		LRK53_RS16620	0.62	-0.6
3,660,527	-		LRK53_RS16620	0.62	-0.4
3,660,641	+				+1.4
3,660,641	+				-1.3
3,660,642	-				-0.2
3,660,642	-				-0.9
3,660,642	-				+0.2
3,660,642	-				-2.2
3,660,642	-				-0.6
3,660,642	-				+0.6
3,660,642	-				-1.1
3,660,642	-				-3.4
3,660,642	-				+0.2
3,660,642	-				-0.8
3,660,702	+				-0.3
3,660,703	-				-0.3
3,660,703	-				-0.7
3,660,703	-				-2.2
3,660,703	-				+1.1
3,660,703	-				+1.8
3,660,703	-				-1.0
3,660,730	+				-0.2
3,660,730	+				-0.9
3,660,730	+				-1.1
3,660,730	+				+0.2
3,660,730	+				-0.2
3,660,730	+				-1.6
3,660,730	+				+0.8
3,660,731	-				-1.6
3,660,731	-				-0.8
3,660,731	-				+0.2
3,660,731	-				-0.2
3,660,731	-				-0.8
3,660,731	-				+0.5
3,660,731	-				-2.1
3,660,731	-				-0.8
3,660,793	+				-0.5
3,660,793	+				+0.0
3,660,793	+				-1.1
3,660,793	+				+0.9
3,660,793	+				-1.7
3,660,793	+				+0.0
3,660,793	+				+0.4
3,660,793	+				-1.9
3,660,793	+				-0.2
3,660,793	+				-1.7
3,660,793	+				+0.8
3,660,794	-				-0.2
3,660,794	-				+1.1
3,660,794	-				+1.1
3,660,794	-				+2.0
3,660,794	-				+0.4
3,660,794	-				-0.9
3,660,794	-				-1.0
3,660,794	-				+0.6
3,660,794	-				+0.0
3,660,794	-				-0.9
3,660,811	+				-0.5
3,660,811	+				+0.3
3,660,811	+				-0.6
3,660,811	+				-0.7
3,660,811	+				-0.2
3,660,812	-				+0.0
3,660,812	-				-0.6
3,660,873	+		LRK53_RS16625	0.26	+0.0
3,660,874	-		LRK53_RS16625	0.26	-0.2
3,660,874	-		LRK53_RS16625	0.26	-1.3
3,660,915	-		LRK53_RS16625	0.39	-1.2
3,660,998	+		LRK53_RS16625	0.64	-1.2
3,660,998	+		LRK53_RS16625	0.64	-0.6
3,660,998	+		LRK53_RS16625	0.64	-0.6
3,660,998	+		LRK53_RS16625	0.64	-0.5
3,660,998	+		LRK53_RS16625	0.64	-2.9
3,660,999	-		LRK53_RS16625	0.64	-0.2
3,660,999	-		LRK53_RS16625	0.64	-0.6
3,660,999	-		LRK53_RS16625	0.64	+1.8
3,660,999	-		LRK53_RS16625	0.64	-0.1
3,660,999	-		LRK53_RS16625	0.64	-0.4
3,660,999	-		LRK53_RS16625	0.64	-2.4
3,660,999	-		LRK53_RS16625	0.64	-1.1
3,660,999	-		LRK53_RS16625	0.64	-1.4
3,660,999	-		LRK53_RS16625	0.64	+0.2
3,660,999	-		LRK53_RS16625	0.64	-0.3
3,660,999	-		LRK53_RS16625	0.64	-1.2
3,660,999	-		LRK53_RS16625	0.64	-0.3
3,660,999	-		LRK53_RS16625	0.64	-1.4
3,661,155	+				-1.5
3,661,156	-				-0.6
3,661,156	-				-0.4
3,661,156	-				-1.4
3,661,174	+				-0.2
3,661,174	+				+0.1
3,661,174	+				-2.0
3,661,174	+				-0.2
3,661,174	+				-0.6
3,661,175	-				-0.0
3,661,175	-				+0.3
3,661,175	-				+1.4
3,661,175	-				-0.6
3,661,175	-				-1.7
3,661,207	+				-0.8
3,661,207	+				+0.4
3,661,207	+				-1.2
3,661,207	+				-1.1
3,661,207	+				-0.8
3,661,207	+				-1.2
3,661,207	+				-1.6
3,661,207	+				-0.9
3,661,208	-				-0.5
3,661,208	-				+1.6
3,661,208	-				+0.4
3,661,213	+				-1.7
3,661,213	+				-0.8
3,661,213	+				-0.5
3,661,214	-				-0.9
3,661,214	-				-2.2
3,661,214	-				-1.0
3,661,224	+				+1.2
3,661,224	+				+0.8
3,661,224	+				-0.9
3,661,224	+				-0.6
3,661,224	+				-2.8
3,661,224	+				-0.4
3,661,224	+				-0.2
3,661,224	+				+0.6
3,661,224	+				-0.2
3,661,224	+				+0.1
3,661,224	+				-2.0
3,661,224	+				+1.6
3,661,224	+				+0.8
3,661,224	+				-1.7
3,661,224	+				-0.1
3,661,224	+				-0.3
3,661,224	+				+2.1
3,661,224	+				-1.3
3,661,224	+				+0.1
3,661,224	+				-0.6
3,661,224	+				-2.0
3,661,224	+				-0.2
3,661,224	+				-0.2
3,661,224	+				-1.6
3,661,224	+				-1.1
3,661,225	-				-1.8
3,661,225	-				-0.6
3,661,225	-				-0.2
3,661,225	-				-2.8
3,661,225	-				-0.4
3,661,225	-				-1.8
3,661,225	-				+0.3
3,661,225	-				-0.4
3,661,225	-				-0.6
3,661,225	-				-0.4
3,661,225	-				-0.0
3,661,225	-				-1.2
3,661,226	+				-2.1
3,661,226	+				+0.2
3,661,226	+				+0.2
3,661,227	-				-1.3
3,661,227	-				+2.6
3,661,227	-				+3.0
3,661,227	-				-0.1
3,661,227	-				-0.8
3,661,227	-				-0.8
3,661,227	-				-0.4
3,661,307	+		LRK53_RS16630	0.50	-0.1
3,661,308	-		LRK53_RS16630	0.50	-1.6
3,661,308	-		LRK53_RS16630	0.50	-0.7
3,661,308	-		LRK53_RS16630	0.50	-1.4
3,661,522	-		LRK53_RS16635	0.36	-0.5
3,661,522	-		LRK53_RS16635	0.36	+0.4
3,661,522	-		LRK53_RS16635	0.36	+0.8
3,661,982	+		LRK53_RS16640	0.63	+0.7
3,661,982	+		LRK53_RS16640	0.63	-1.0
3,661,982	+		LRK53_RS16640	0.63	+0.3