Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS06510

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS06505 and LRK53_RS06510 are separated by 58 nucleotidesLRK53_RS06510 and LRK53_RS06515 overlap by 25 nucleotidesLRK53_RS06515 and LRK53_RS06520 are separated by 94 nucleotides LRK53_RS06505: LRK53_RS06505 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,473,174 to 1,474,544 _RS06505 LRK53_RS06510: LRK53_RS06510 - amidase family protein, at 1,474,603 to 1,475,274 _RS06510 LRK53_RS06515: LRK53_RS06515 - amidase family protein, at 1,475,250 to 1,475,873 _RS06515 LRK53_RS06520: LRK53_RS06520 - c-type cytochrome, at 1,475,968 to 1,476,726 _RS06520 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1473.750 kb on + strand, within LRK53_RS06505at 1473.750 kb on + strand, within LRK53_RS06505at 1473.751 kb on - strand, within LRK53_RS06505at 1473.796 kb on - strand, within LRK53_RS06505at 1473.808 kb on + strand, within LRK53_RS06505at 1473.916 kb on - strand, within LRK53_RS06505at 1474.030 kb on - strand, within LRK53_RS06505at 1474.030 kb on - strand, within LRK53_RS06505at 1474.304 kb on + strand, within LRK53_RS06505at 1474.452 kb on + strandat 1474.452 kb on + strandat 1474.452 kb on + strandat 1474.452 kb on + strandat 1474.452 kb on + strandat 1474.452 kb on + strandat 1474.453 kb on - strandat 1474.453 kb on - strandat 1474.453 kb on - strandat 1474.453 kb on - strandat 1474.453 kb on - strandat 1474.482 kb on + strandat 1474.482 kb on + strandat 1474.482 kb on + strandat 1474.483 kb on - strandat 1474.590 kb on + strandat 1474.591 kb on - strandat 1474.591 kb on - strandat 1474.591 kb on - strandat 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.988 kb on + strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1474.989 kb on - strand, within LRK53_RS06510at 1475.135 kb on + strand, within LRK53_RS06510at 1475.135 kb on + strand, within LRK53_RS06510at 1475.135 kb on + strand, within LRK53_RS06510at 1475.135 kb on + strand, within LRK53_RS06510at 1475.136 kb on - strand, within LRK53_RS06510at 1475.136 kb on - strand, within LRK53_RS06510at 1475.162 kb on + strand, within LRK53_RS06510at 1475.162 kb on + strand, within LRK53_RS06510at 1475.163 kb on - strand, within LRK53_RS06510at 1475.341 kb on + strand, within LRK53_RS06515at 1475.341 kb on + strand, within LRK53_RS06515at 1475.342 kb on - strand, within LRK53_RS06515at 1475.342 kb on - strand, within LRK53_RS06515at 1475.342 kb on - strand, within LRK53_RS06515at 1475.578 kb on + strand, within LRK53_RS06515at 1475.578 kb on + strand, within LRK53_RS06515at 1475.578 kb on + strand, within LRK53_RS06515at 1475.579 kb on - strand, within LRK53_RS06515at 1475.579 kb on - strand, within LRK53_RS06515at 1475.874 kb on + strandat 1475.875 kb on - strandat 1475.875 kb on - strandat 1475.875 kb on - strandat 1475.875 kb on - strandat 1475.892 kb on + strandat 1475.892 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.956 kb on + strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1475.957 kb on - strandat 1476.166 kb on + strand, within LRK53_RS06520at 1476.167 kb on - strand, within LRK53_RS06520at 1476.167 kb on - strand, within LRK53_RS06520at 1476.199 kb on + strand, within LRK53_RS06520at 1476.199 kb on + strand, within LRK53_RS06520at 1476.200 kb on - strand, within LRK53_RS06520at 1476.200 kb on - strand, within LRK53_RS06520at 1476.200 kb on - strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.244 kb on + strand, within LRK53_RS06520at 1476.245 kb on - strand, within LRK53_RS06520at 1476.245 kb on - strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.259 kb on + strand, within LRK53_RS06520at 1476.260 kb on - strand, within LRK53_RS06520at 1476.260 kb on - strand, within LRK53_RS06520at 1476.260 kb on - strand, within LRK53_RS06520at 1476.260 kb on - strand, within LRK53_RS06520

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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1,473,750 + LRK53_RS06505 0.42 -0.4
1,473,750 + LRK53_RS06505 0.42 -1.8
1,473,751 - LRK53_RS06505 0.42 -1.0
1,473,796 - LRK53_RS06505 0.45 -0.6
1,473,808 + LRK53_RS06505 0.46 +0.4
1,473,916 - LRK53_RS06505 0.54 +1.1
1,474,030 - LRK53_RS06505 0.62 -1.2
1,474,030 - LRK53_RS06505 0.62 -1.2
1,474,304 + LRK53_RS06505 0.82 -0.6
1,474,452 + +0.2
1,474,452 + -0.8
1,474,452 + -0.8
1,474,452 + -0.2
1,474,452 + +1.4
1,474,452 + -0.6
1,474,453 - -0.1
1,474,453 - +0.1
1,474,453 - -0.4
1,474,453 - -0.0
1,474,453 - -1.5
1,474,482 + -0.0
1,474,482 + +0.2
1,474,482 + -1.3
1,474,483 - -0.4
1,474,590 + -0.7
1,474,591 - -1.8
1,474,591 - +1.1
1,474,591 - +0.4
1,474,988 + LRK53_RS06510 0.57 -0.1
1,474,988 + LRK53_RS06510 0.57 -1.3
1,474,988 + LRK53_RS06510 0.57 -0.1
1,474,988 + LRK53_RS06510 0.57 -2.3
1,474,988 + LRK53_RS06510 0.57 +0.9
1,474,988 + LRK53_RS06510 0.57 -2.3
1,474,988 + LRK53_RS06510 0.57 +0.3
1,474,988 + LRK53_RS06510 0.57 -0.6
1,474,988 + LRK53_RS06510 0.57 +1.0
1,474,988 + LRK53_RS06510 0.57 +0.6
1,474,988 + LRK53_RS06510 0.57 +2.0
1,474,988 + LRK53_RS06510 0.57 -1.1
1,474,988 + LRK53_RS06510 0.57 -1.8
1,474,988 + LRK53_RS06510 0.57 -2.4
1,474,988 + LRK53_RS06510 0.57 +0.2
1,474,989 - LRK53_RS06510 0.57 -0.7
1,474,989 - LRK53_RS06510 0.57 +0.2
1,474,989 - LRK53_RS06510 0.57 -1.0
1,474,989 - LRK53_RS06510 0.57 -0.0
1,474,989 - LRK53_RS06510 0.57 +0.2
1,474,989 - LRK53_RS06510 0.57 -1.2
1,474,989 - LRK53_RS06510 0.57 +0.2
1,474,989 - LRK53_RS06510 0.57 +0.4
1,474,989 - LRK53_RS06510 0.57 +0.2
1,474,989 - LRK53_RS06510 0.57 -1.3
1,474,989 - LRK53_RS06510 0.57 +0.6
1,474,989 - LRK53_RS06510 0.57 -0.8
1,474,989 - LRK53_RS06510 0.57 -0.2
1,474,989 - LRK53_RS06510 0.57 -2.5
1,474,989 - LRK53_RS06510 0.57 -0.0
1,474,989 - LRK53_RS06510 0.57 -1.1
1,474,989 - LRK53_RS06510 0.57 +0.6
1,474,989 - LRK53_RS06510 0.57 -1.0
1,474,989 - LRK53_RS06510 0.57 -0.6
1,474,989 - LRK53_RS06510 0.57 -0.4
1,474,989 - LRK53_RS06510 0.57 -0.1
1,474,989 - LRK53_RS06510 0.57 +1.6
1,474,989 - LRK53_RS06510 0.57 -0.6
1,474,989 - LRK53_RS06510 0.57 -1.1
1,474,989 - LRK53_RS06510 0.57 +2.4
1,474,989 - LRK53_RS06510 0.57 +0.0
1,474,989 - LRK53_RS06510 0.57 +1.0
1,474,989 - LRK53_RS06510 0.57 -0.6
1,475,135 + LRK53_RS06510 0.79 -1.0
1,475,135 + LRK53_RS06510 0.79 -0.5
1,475,135 + LRK53_RS06510 0.79 -0.5
1,475,135 + LRK53_RS06510 0.79 -1.1
1,475,136 - LRK53_RS06510 0.79 +0.6
1,475,136 - LRK53_RS06510 0.79 -1.6
1,475,162 + LRK53_RS06510 0.83 -0.9
1,475,162 + LRK53_RS06510 0.83 -1.0
1,475,163 - LRK53_RS06510 0.83 -0.0
1,475,341 + LRK53_RS06515 0.15 -0.8
1,475,341 + LRK53_RS06515 0.15 +1.8
1,475,342 - LRK53_RS06515 0.15 -0.0
1,475,342 - LRK53_RS06515 0.15 -1.0
1,475,342 - LRK53_RS06515 0.15 -0.7
1,475,578 + LRK53_RS06515 0.53 -2.6
1,475,578 + LRK53_RS06515 0.53 +0.6
1,475,578 + LRK53_RS06515 0.53 +0.2
1,475,579 - LRK53_RS06515 0.53 -0.4
1,475,579 - LRK53_RS06515 0.53 -0.0
1,475,874 + -0.5
1,475,875 - -1.1
1,475,875 - -1.2
1,475,875 - -0.8
1,475,875 - -0.2
1,475,892 + -1.1
1,475,892 + -0.3
1,475,956 + -1.5
1,475,956 + -1.1
1,475,956 + -2.3
1,475,956 + -0.4
1,475,956 + -0.9
1,475,956 + -1.4
1,475,956 + -0.3
1,475,956 + +1.0
1,475,956 + -1.2
1,475,956 + +0.7
1,475,957 - -1.2
1,475,957 - -1.4
1,475,957 - -0.7
1,475,957 - -2.7
1,475,957 - -0.8
1,475,957 - -0.8
1,475,957 - -0.3
1,475,957 - -0.4
1,475,957 - -0.2
1,475,957 - -3.1
1,475,957 - -1.3
1,475,957 - -0.9
1,475,957 - -0.2
1,475,957 - +0.1
1,475,957 - -0.8
1,475,957 - -2.0
1,475,957 - +1.6
1,475,957 - -0.9
1,475,957 - -0.0
1,475,957 - -0.3
1,476,166 + LRK53_RS06520 0.26 +0.3
1,476,167 - LRK53_RS06520 0.26 -0.0
1,476,167 - LRK53_RS06520 0.26 -1.4
1,476,199 + LRK53_RS06520 0.30 -1.8
1,476,199 + LRK53_RS06520 0.30 -0.6
1,476,200 - LRK53_RS06520 0.31 -0.2
1,476,200 - LRK53_RS06520 0.31 -0.9
1,476,200 - LRK53_RS06520 0.31 +0.5
1,476,244 + LRK53_RS06520 0.36 -0.8
1,476,244 + LRK53_RS06520 0.36 -0.3
1,476,244 + LRK53_RS06520 0.36 -1.3
1,476,244 + LRK53_RS06520 0.36 -0.2
1,476,244 + LRK53_RS06520 0.36 -0.9
1,476,244 + LRK53_RS06520 0.36 -1.8
1,476,244 + LRK53_RS06520 0.36 -0.3
1,476,244 + LRK53_RS06520 0.36 -1.8
1,476,244 + LRK53_RS06520 0.36 -1.1
1,476,245 - LRK53_RS06520 0.36 -0.7
1,476,245 - LRK53_RS06520 0.36 -1.2
1,476,259 + LRK53_RS06520 0.38 -0.6
1,476,259 + LRK53_RS06520 0.38 -1.5
1,476,259 + LRK53_RS06520 0.38 -3.2
1,476,259 + LRK53_RS06520 0.38 -0.5
1,476,259 + LRK53_RS06520 0.38 -0.6
1,476,259 + LRK53_RS06520 0.38 -1.9
1,476,259 + LRK53_RS06520 0.38 -2.0
1,476,259 + LRK53_RS06520 0.38 +2.4
1,476,259 + LRK53_RS06520 0.38 -0.3
1,476,259 + LRK53_RS06520 0.38 +0.1
1,476,259 + LRK53_RS06520 0.38 -0.8
1,476,259 + LRK53_RS06520 0.38 -2.1
1,476,259 + LRK53_RS06520 0.38 -0.6
1,476,259 + LRK53_RS06520 0.38 -1.2
1,476,260 - LRK53_RS06520 0.38 -1.0
1,476,260 - LRK53_RS06520 0.38 +0.4
1,476,260 - LRK53_RS06520 0.38 -1.2
1,476,260 - LRK53_RS06520 0.38 -1.8

Or see this region's nucleotide sequence