Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03795 and LRK53_RS03800 overlap by 17 nucleotides LRK53_RS03800 and LRK53_RS03805 overlap by 4 nucleotides LRK53_RS03805 and LRK53_RS03810 are separated by 4 nucleotides LRK53_RS03810 and LRK53_RS03815 overlap by 4 nucleotides
LRK53_RS03795: LRK53_RS03795 - phosphomethylpyrimidine synthase ThiC, at 891,060 to 892,862
_RS03795
LRK53_RS03800: LRK53_RS03800 - FAD-dependent oxidoreductase, at 892,846 to 893,841
_RS03800
LRK53_RS03805: LRK53_RS03805 - sulfur carrier protein ThiS, at 893,838 to 894,032
_RS03805
LRK53_RS03810: LRK53_RS03810 - thiazole synthase, at 894,037 to 894,816
_RS03810
LRK53_RS03815: LRK53_RS03815 - thiamine phosphate synthase, at 894,813 to 895,421
_RS03815
Position (kb) 892
893
894 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 891.870 kb on + strand, within LRK53_RS03795 at 891.871 kb on - strand, within LRK53_RS03795 at 891.871 kb on - strand, within LRK53_RS03795 at 891.871 kb on - strand, within LRK53_RS03795 at 891.871 kb on - strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.966 kb on + strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.967 kb on - strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 891.999 kb on + strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.000 kb on - strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.098 kb on + strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.099 kb on - strand, within LRK53_RS03795 at 892.137 kb on + strand, within LRK53_RS03795 at 892.137 kb on + strand, within LRK53_RS03795 at 892.137 kb on + strand, within LRK53_RS03795 at 892.137 kb on + strand, within LRK53_RS03795 at 892.137 kb on + strand, within LRK53_RS03795 at 892.138 kb on - strand, within LRK53_RS03795 at 892.138 kb on - strand, within LRK53_RS03795 at 892.138 kb on - strand, within LRK53_RS03795 at 892.138 kb on - strand, within LRK53_RS03795 at 892.359 kb on + strand, within LRK53_RS03795 at 892.359 kb on + strand, within LRK53_RS03795 at 892.360 kb on - strand, within LRK53_RS03795 at 892.360 kb on - strand, within LRK53_RS03795 at 892.398 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.464 kb on + strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.465 kb on - strand, within LRK53_RS03795 at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.845 kb on + strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 892.846 kb on - strand at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.521 kb on + strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.522 kb on - strand, within LRK53_RS03800 at 893.788 kb on + strand at 893.788 kb on + strand at 893.788 kb on + strand at 893.789 kb on - strand at 893.789 kb on - strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.030 kb on + strand at 894.031 kb on - strand at 894.055 kb on + strand at 894.101 kb on - strand at 894.101 kb on - strand at 894.161 kb on + strand, within LRK53_RS03810 at 894.161 kb on + strand, within LRK53_RS03810 at 894.162 kb on - strand, within LRK53_RS03810 at 894.162 kb on - strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.430 kb on + strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.431 kb on - strand, within LRK53_RS03810 at 894.640 kb on + strand, within LRK53_RS03810 at 894.640 kb on + strand, within LRK53_RS03810 at 894.640 kb on + strand, within LRK53_RS03810 at 894.641 kb on - strand, within LRK53_RS03810 at 894.641 kb on - strand, within LRK53_RS03810 at 894.834 kb on + strand at 894.834 kb on + strand at 894.835 kb on - strand at 894.835 kb on - strand at 894.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 891,870 + LRK53_RS03795 0.45 -0.5 891,871 - LRK53_RS03795 0.45 -1.8 891,871 - LRK53_RS03795 0.45 -0.8 891,871 - LRK53_RS03795 0.45 +0.3 891,871 - LRK53_RS03795 0.45 -2.8 891,966 + LRK53_RS03795 0.50 +2.4 891,966 + LRK53_RS03795 0.50 -1.7 891,966 + LRK53_RS03795 0.50 -1.1 891,966 + LRK53_RS03795 0.50 -1.1 891,966 + LRK53_RS03795 0.50 +0.4 891,966 + LRK53_RS03795 0.50 -0.4 891,966 + LRK53_RS03795 0.50 +0.2 891,966 + LRK53_RS03795 0.50 +0.3 891,966 + LRK53_RS03795 0.50 +0.3 891,966 + LRK53_RS03795 0.50 +0.9 891,966 + LRK53_RS03795 0.50 +0.2 891,966 + LRK53_RS03795 0.50 +0.1 891,966 + LRK53_RS03795 0.50 +1.1 891,966 + LRK53_RS03795 0.50 +0.1 891,966 + LRK53_RS03795 0.50 -1.3 891,966 + LRK53_RS03795 0.50 +1.0 891,967 - LRK53_RS03795 0.50 +0.3 891,967 - LRK53_RS03795 0.50 +0.3 891,967 - LRK53_RS03795 0.50 -1.7 891,967 - LRK53_RS03795 0.50 -0.5 891,967 - LRK53_RS03795 0.50 +0.3 891,967 - LRK53_RS03795 0.50 +1.1 891,967 - LRK53_RS03795 0.50 -0.2 891,967 - LRK53_RS03795 0.50 -1.1 891,967 - LRK53_RS03795 0.50 +0.2 891,967 - LRK53_RS03795 0.50 -0.8 891,967 - LRK53_RS03795 0.50 +0.8 891,967 - LRK53_RS03795 0.50 -0.5 891,967 - LRK53_RS03795 0.50 -1.2 891,967 - LRK53_RS03795 0.50 -2.1 891,967 - LRK53_RS03795 0.50 +0.1 891,967 - LRK53_RS03795 0.50 -0.4 891,967 - LRK53_RS03795 0.50 -1.4 891,967 - LRK53_RS03795 0.50 -1.9 891,999 + LRK53_RS03795 0.52 -0.2 891,999 + LRK53_RS03795 0.52 -0.2 891,999 + LRK53_RS03795 0.52 -2.8 891,999 + LRK53_RS03795 0.52 +0.2 891,999 + LRK53_RS03795 0.52 -1.8 891,999 + LRK53_RS03795 0.52 +0.4 891,999 + LRK53_RS03795 0.52 +0.5 891,999 + LRK53_RS03795 0.52 -0.8 891,999 + LRK53_RS03795 0.52 +0.8 891,999 + LRK53_RS03795 0.52 -1.0 892,000 - LRK53_RS03795 0.52 -0.6 892,000 - LRK53_RS03795 0.52 -1.3 892,000 - LRK53_RS03795 0.52 +0.4 892,000 - LRK53_RS03795 0.52 -1.4 892,000 - LRK53_RS03795 0.52 -1.7 892,000 - LRK53_RS03795 0.52 -0.5 892,000 - LRK53_RS03795 0.52 +1.9 892,000 - LRK53_RS03795 0.52 -3.1 892,000 - LRK53_RS03795 0.52 -0.2 892,098 + LRK53_RS03795 0.58 -0.4 892,098 + LRK53_RS03795 0.58 +0.1 892,098 + LRK53_RS03795 0.58 -0.7 892,098 + LRK53_RS03795 0.58 -1.1 892,098 + LRK53_RS03795 0.58 -0.1 892,098 + LRK53_RS03795 0.58 -0.8 892,098 + LRK53_RS03795 0.58 +0.1 892,098 + LRK53_RS03795 0.58 -0.1 892,098 + LRK53_RS03795 0.58 +3.5 892,098 + LRK53_RS03795 0.58 -0.3 892,098 + LRK53_RS03795 0.58 -0.4 892,098 + LRK53_RS03795 0.58 -0.8 892,099 - LRK53_RS03795 0.58 -1.0 892,099 - LRK53_RS03795 0.58 -0.6 892,099 - LRK53_RS03795 0.58 -2.0 892,099 - LRK53_RS03795 0.58 -0.9 892,099 - LRK53_RS03795 0.58 -0.4 892,099 - LRK53_RS03795 0.58 -0.4 892,137 + LRK53_RS03795 0.60 -1.1 892,137 + LRK53_RS03795 0.60 +0.1 892,137 + LRK53_RS03795 0.60 -1.4 892,137 + LRK53_RS03795 0.60 +1.5 892,137 + LRK53_RS03795 0.60 -0.2 892,138 - LRK53_RS03795 0.60 -1.4 892,138 - LRK53_RS03795 0.60 -1.4 892,138 - LRK53_RS03795 0.60 +0.7 892,138 - LRK53_RS03795 0.60 -1.4 892,359 + LRK53_RS03795 0.72 -0.3 892,359 + LRK53_RS03795 0.72 +0.6 892,360 - LRK53_RS03795 0.72 -0.7 892,360 - LRK53_RS03795 0.72 -1.0 892,398 + LRK53_RS03795 0.74 -1.4 892,464 + LRK53_RS03795 0.78 -0.2 892,464 + LRK53_RS03795 0.78 +0.9 892,464 + LRK53_RS03795 0.78 -1.3 892,464 + LRK53_RS03795 0.78 +0.2 892,464 + LRK53_RS03795 0.78 -0.4 892,464 + LRK53_RS03795 0.78 -2.4 892,464 + LRK53_RS03795 0.78 -0.1 892,464 + LRK53_RS03795 0.78 -1.1 892,464 + LRK53_RS03795 0.78 -0.3 892,464 + LRK53_RS03795 0.78 -3.0 892,464 + LRK53_RS03795 0.78 +0.3 892,464 + LRK53_RS03795 0.78 -1.5 892,464 + LRK53_RS03795 0.78 -1.0 892,465 - LRK53_RS03795 0.78 -0.6 892,465 - LRK53_RS03795 0.78 +0.3 892,465 - LRK53_RS03795 0.78 +0.8 892,465 - LRK53_RS03795 0.78 -1.2 892,465 - LRK53_RS03795 0.78 -1.9 892,465 - LRK53_RS03795 0.78 -1.1 892,465 - LRK53_RS03795 0.78 +0.3 892,465 - LRK53_RS03795 0.78 -0.2 892,465 - LRK53_RS03795 0.78 -0.2 892,465 - LRK53_RS03795 0.78 -0.5 892,845 + +2.2 892,845 + -0.5 892,845 + -0.8 892,845 + -2.0 892,845 + +1.2 892,845 + +0.1 892,845 + -0.6 892,845 + -1.7 892,845 + -0.4 892,845 + +0.6 892,845 + +0.6 892,845 + -0.2 892,845 + -0.1 892,845 + -0.3 892,845 + -0.2 892,845 + -1.2 892,845 + +1.1 892,845 + +1.1 892,845 + -0.6 892,845 + -0.5 892,845 + -0.8 892,845 + -2.6 892,845 + -2.2 892,845 + -1.5 892,845 + -1.1 892,845 + -1.4 892,845 + -3.8 892,845 + -0.3 892,845 + -0.4 892,845 + +0.3 892,845 + +0.6 892,845 + -1.7 892,845 + +0.5 892,845 + -3.6 892,845 + -1.1 892,845 + -2.0 892,845 + -0.2 892,845 + -0.5 892,845 + -0.5 892,845 + +0.1 892,845 + -0.5 892,845 + -1.7 892,846 - +0.3 892,846 - -2.1 892,846 - -1.2 892,846 - +0.6 892,846 - +0.2 892,846 - +0.2 892,846 - -2.9 892,846 - +1.1 892,846 - -0.7 892,846 - -0.3 892,846 - -0.0 892,846 - -0.4 892,846 - -0.8 892,846 - -1.3 892,846 - -1.7 892,846 - -0.9 892,846 - -0.4 892,846 - -0.9 892,846 - -2.8 892,846 - -1.2 892,846 - -0.7 892,846 - +0.6 892,846 - -0.3 892,846 - +0.1 892,846 - +1.3 892,846 - +0.1 892,846 - -0.4 892,846 - +0.6 892,846 - -0.4 892,846 - +0.5 892,846 - +0.7 892,846 - -1.1 892,846 - -0.8 892,846 - -0.8 892,846 - -0.2 892,846 - -2.0 892,846 - -0.5 893,521 + LRK53_RS03800 0.68 -0.2 893,521 + LRK53_RS03800 0.68 +0.2 893,521 + LRK53_RS03800 0.68 +0.8 893,521 + LRK53_RS03800 0.68 -1.9 893,521 + LRK53_RS03800 0.68 -1.4 893,521 + LRK53_RS03800 0.68 -1.9 893,521 + LRK53_RS03800 0.68 +0.3 893,521 + LRK53_RS03800 0.68 -1.6 893,521 + LRK53_RS03800 0.68 +0.4 893,521 + LRK53_RS03800 0.68 -1.7 893,522 - LRK53_RS03800 0.68 -1.7 893,522 - LRK53_RS03800 0.68 -3.0 893,522 - LRK53_RS03800 0.68 -1.6 893,522 - LRK53_RS03800 0.68 -1.1 893,522 - LRK53_RS03800 0.68 -0.5 893,522 - LRK53_RS03800 0.68 -2.6 893,788 + -0.6 893,788 + -0.1 893,788 + -0.8 893,789 - +0.6 893,789 - -0.0 894,030 + +0.6 894,030 + +1.6 894,030 + -1.8 894,030 + -0.5 894,030 + -0.1 894,030 + +0.1 894,030 + +2.4 894,031 - +0.2 894,055 + -0.5 894,101 - +1.0 894,101 - -0.4 894,161 + LRK53_RS03810 0.16 -1.4 894,161 + LRK53_RS03810 0.16 -2.3 894,162 - LRK53_RS03810 0.16 -1.3 894,162 - LRK53_RS03810 0.16 -0.9 894,430 + LRK53_RS03810 0.50 -0.6 894,430 + LRK53_RS03810 0.50 +1.6 894,430 + LRK53_RS03810 0.50 -2.1 894,430 + LRK53_RS03810 0.50 +0.5 894,430 + LRK53_RS03810 0.50 +0.9 894,430 + LRK53_RS03810 0.50 -0.0 894,431 - LRK53_RS03810 0.51 -0.7 894,431 - LRK53_RS03810 0.51 -0.4 894,431 - LRK53_RS03810 0.51 -1.5 894,431 - LRK53_RS03810 0.51 -1.5 894,431 - LRK53_RS03810 0.51 +0.1 894,431 - LRK53_RS03810 0.51 -0.4 894,640 + LRK53_RS03810 0.77 -0.9 894,640 + LRK53_RS03810 0.77 -0.6 894,640 + LRK53_RS03810 0.77 -1.4 894,641 - LRK53_RS03810 0.77 +0.5 894,641 - LRK53_RS03810 0.77 -0.9 894,834 + +1.5 894,834 + -1.8 894,835 - -1.9 894,835 - +0.4 894,835 - -2.4
Or see this region's nucleotide sequence