Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03245

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03240 and LRK53_RS03245 are separated by 232 nucleotidesLRK53_RS03245 and LRK53_RS03250 are separated by 83 nucleotides LRK53_RS03240: LRK53_RS03240 - TonB-dependent receptor, at 759,633 to 761,975 _RS03240 LRK53_RS03245: LRK53_RS03245 - glycerophosphodiester phosphodiesterase, at 762,208 to 763,257 _RS03245 LRK53_RS03250: LRK53_RS03250 - ectonucleotide pyrophosphatase/phosphodiesterase, at 763,341 to 764,678 _RS03250 Position (kb) 762 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 761.214 kb on + strand, within LRK53_RS03240at 761.214 kb on + strand, within LRK53_RS03240at 761.215 kb on - strand, within LRK53_RS03240at 761.324 kb on + strand, within LRK53_RS03240at 761.382 kb on + strand, within LRK53_RS03240at 761.382 kb on + strand, within LRK53_RS03240at 761.382 kb on + strand, within LRK53_RS03240at 761.383 kb on - strand, within LRK53_RS03240at 761.383 kb on - strand, within LRK53_RS03240at 761.383 kb on - strand, within LRK53_RS03240at 761.472 kb on + strand, within LRK53_RS03240at 761.472 kb on + strand, within LRK53_RS03240at 761.473 kb on - strand, within LRK53_RS03240at 761.473 kb on - strand, within LRK53_RS03240at 761.473 kb on - strand, within LRK53_RS03240at 761.547 kb on + strand, within LRK53_RS03240at 761.547 kb on + strand, within LRK53_RS03240at 761.547 kb on + strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.548 kb on - strand, within LRK53_RS03240at 761.577 kb on + strand, within LRK53_RS03240at 761.577 kb on + strand, within LRK53_RS03240at 761.578 kb on - strand, within LRK53_RS03240at 761.578 kb on - strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.589 kb on + strand, within LRK53_RS03240at 761.590 kb on - strand, within LRK53_RS03240at 761.590 kb on - strand, within LRK53_RS03240at 761.590 kb on - strand, within LRK53_RS03240at 761.590 kb on - strand, within LRK53_RS03240at 761.590 kb on - strand, within LRK53_RS03240at 761.712 kb on + strand, within LRK53_RS03240at 761.712 kb on + strand, within LRK53_RS03240at 761.712 kb on + strand, within LRK53_RS03240at 761.712 kb on + strand, within LRK53_RS03240at 761.712 kb on + strand, within LRK53_RS03240at 761.713 kb on - strand, within LRK53_RS03240at 761.713 kb on - strand, within LRK53_RS03240at 761.728 kb on - strand, within LRK53_RS03240at 761.730 kb on + strand, within LRK53_RS03240at 761.730 kb on + strand, within LRK53_RS03240at 761.730 kb on + strand, within LRK53_RS03240at 761.730 kb on + strand, within LRK53_RS03240at 761.730 kb on + strand, within LRK53_RS03240at 761.731 kb on - strand, within LRK53_RS03240at 761.731 kb on - strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.736 kb on + strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.737 kb on - strand, within LRK53_RS03240at 761.738 kb on + strand, within LRK53_RS03240at 761.738 kb on + strand, within LRK53_RS03240at 761.738 kb on + strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.739 kb on - strand, within LRK53_RS03240at 761.763 kb on + strandat 761.764 kb on - strandat 761.765 kb on + strandat 761.765 kb on + strandat 761.790 kb on + strandat 761.791 kb on - strandat 761.865 kb on + strandat 761.866 kb on - strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.988 kb on + strandat 761.989 kb on - strandat 761.989 kb on - strandat 761.989 kb on - strandat 761.989 kb on - strandat 761.989 kb on - strandat 761.989 kb on - strandat 762.046 kb on - strandat 762.046 kb on - strandat 762.046 kb on - strandat 762.046 kb on - strandat 762.046 kb on - strandat 762.046 kb on - strandat 762.167 kb on + strandat 762.167 kb on + strandat 762.167 kb on + strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.168 kb on - strandat 762.207 kb on + strandat 762.208 kb on - strandat 762.313 kb on + strand, within LRK53_RS03245at 762.314 kb on - strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.689 kb on - strand, within LRK53_RS03245at 762.751 kb on + strand, within LRK53_RS03245at 762.751 kb on + strand, within LRK53_RS03245at 762.752 kb on - strand, within LRK53_RS03245at 762.752 kb on - strand, within LRK53_RS03245at 762.805 kb on + strand, within LRK53_RS03245at 762.805 kb on + strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.883 kb on + strand, within LRK53_RS03245at 762.916 kb on + strand, within LRK53_RS03245at 762.916 kb on + strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 763.081 kb on + strand, within LRK53_RS03245at 763.184 kb on - strandat 763.184 kb on - strandat 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.561 kb on - strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.663 kb on - strand, within LRK53_RS03250at 763.668 kb on + strand, within LRK53_RS03250at 763.668 kb on + strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.881 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
remove
761,214 + LRK53_RS03240 0.67 -0.1
761,214 + LRK53_RS03240 0.67 +0.1
761,215 - LRK53_RS03240 0.68 +0.8
761,324 + LRK53_RS03240 0.72 -0.1
761,382 + LRK53_RS03240 0.75 -0.2
761,382 + LRK53_RS03240 0.75 -0.0
761,382 + LRK53_RS03240 0.75 -1.6
761,383 - LRK53_RS03240 0.75 +0.4
761,383 - LRK53_RS03240 0.75 -0.5
761,383 - LRK53_RS03240 0.75 -1.1
761,472 + LRK53_RS03240 0.78 -0.0
761,472 + LRK53_RS03240 0.78 +0.8
761,473 - LRK53_RS03240 0.79 +0.7
761,473 - LRK53_RS03240 0.79 +1.2
761,473 - LRK53_RS03240 0.79 -1.3
761,547 + LRK53_RS03240 0.82 -1.3
761,547 + LRK53_RS03240 0.82 -1.0
761,547 + LRK53_RS03240 0.82 +0.1
761,548 - LRK53_RS03240 0.82 +1.7
761,548 - LRK53_RS03240 0.82 -1.4
761,548 - LRK53_RS03240 0.82 +0.1
761,548 - LRK53_RS03240 0.82 -1.6
761,548 - LRK53_RS03240 0.82 -0.3
761,548 - LRK53_RS03240 0.82 -0.8
761,577 + LRK53_RS03240 0.83 -1.0
761,577 + LRK53_RS03240 0.83 -1.2
761,578 - LRK53_RS03240 0.83 -0.9
761,578 - LRK53_RS03240 0.83 +0.1
761,589 + LRK53_RS03240 0.83 -0.9
761,589 + LRK53_RS03240 0.83 -3.5
761,589 + LRK53_RS03240 0.83 -0.0
761,589 + LRK53_RS03240 0.83 -0.7
761,589 + LRK53_RS03240 0.83 -0.2
761,589 + LRK53_RS03240 0.83 -1.4
761,590 - LRK53_RS03240 0.84 -0.8
761,590 - LRK53_RS03240 0.84 +0.1
761,590 - LRK53_RS03240 0.84 +0.2
761,590 - LRK53_RS03240 0.84 -0.5
761,590 - LRK53_RS03240 0.84 -0.5
761,712 + LRK53_RS03240 0.89 -0.5
761,712 + LRK53_RS03240 0.89 +0.7
761,712 + LRK53_RS03240 0.89 -1.2
761,712 + LRK53_RS03240 0.89 -0.4
761,712 + LRK53_RS03240 0.89 -3.1
761,713 - LRK53_RS03240 0.89 -1.6
761,713 - LRK53_RS03240 0.89 -0.1
761,728 - LRK53_RS03240 0.89 -2.1
761,730 + LRK53_RS03240 0.90 -1.2
761,730 + LRK53_RS03240 0.90 +0.8
761,730 + LRK53_RS03240 0.90 -1.7
761,730 + LRK53_RS03240 0.90 -1.3
761,730 + LRK53_RS03240 0.90 -0.9
761,731 - LRK53_RS03240 0.90 -2.3
761,731 - LRK53_RS03240 0.90 +2.5
761,736 + LRK53_RS03240 0.90 +1.6
761,736 + LRK53_RS03240 0.90 -0.7
761,736 + LRK53_RS03240 0.90 -1.4
761,736 + LRK53_RS03240 0.90 -0.1
761,736 + LRK53_RS03240 0.90 -1.0
761,736 + LRK53_RS03240 0.90 -0.3
761,736 + LRK53_RS03240 0.90 -0.9
761,736 + LRK53_RS03240 0.90 -0.7
761,736 + LRK53_RS03240 0.90 +0.6
761,736 + LRK53_RS03240 0.90 +0.7
761,736 + LRK53_RS03240 0.90 -0.9
761,736 + LRK53_RS03240 0.90 -0.4
761,736 + LRK53_RS03240 0.90 -1.2
761,736 + LRK53_RS03240 0.90 -1.7
761,736 + LRK53_RS03240 0.90 -1.2
761,737 - LRK53_RS03240 0.90 +0.3
761,737 - LRK53_RS03240 0.90 -0.9
761,737 - LRK53_RS03240 0.90 +3.5
761,737 - LRK53_RS03240 0.90 -0.9
761,737 - LRK53_RS03240 0.90 -0.3
761,737 - LRK53_RS03240 0.90 -0.6
761,737 - LRK53_RS03240 0.90 -1.3
761,737 - LRK53_RS03240 0.90 +0.1
761,737 - LRK53_RS03240 0.90 -0.2
761,737 - LRK53_RS03240 0.90 -0.7
761,737 - LRK53_RS03240 0.90 -0.5
761,738 + LRK53_RS03240 0.90 -0.4
761,738 + LRK53_RS03240 0.90 +0.5
761,738 + LRK53_RS03240 0.90 -0.6
761,739 - LRK53_RS03240 0.90 -0.5
761,739 - LRK53_RS03240 0.90 -0.2
761,739 - LRK53_RS03240 0.90 -0.4
761,739 - LRK53_RS03240 0.90 +1.5
761,739 - LRK53_RS03240 0.90 -0.3
761,739 - LRK53_RS03240 0.90 +0.1
761,739 - LRK53_RS03240 0.90 -0.2
761,763 + -1.7
761,764 - -1.2
761,765 + +0.6
761,765 + -1.3
761,790 + -0.3
761,791 - -1.0
761,865 + +0.8
761,866 - -0.7
761,988 + -0.3
761,988 + -0.2
761,988 + -0.7
761,988 + -3.1
761,988 + -3.3
761,988 + -0.5
761,988 + -1.3
761,989 - +0.8
761,989 - -0.1
761,989 - -1.7
761,989 - +0.4
761,989 - -0.3
761,989 - -1.4
762,046 - +1.1
762,046 - -1.4
762,046 - -1.2
762,046 - +0.3
762,046 - +0.3
762,046 - +0.5
762,167 + -2.2
762,167 + -0.0
762,167 + +0.2
762,168 - -2.4
762,168 - -1.7
762,168 - +0.9
762,168 - +0.1
762,168 - -0.4
762,168 - -2.0
762,168 - +2.0
762,207 + -2.0
762,208 - +0.3
762,313 + LRK53_RS03245 0.10 -1.3
762,314 - LRK53_RS03245 0.10 -0.5
762,688 + LRK53_RS03245 0.46 -2.3
762,688 + LRK53_RS03245 0.46 -1.1
762,688 + LRK53_RS03245 0.46 -1.4
762,688 + LRK53_RS03245 0.46 -0.2
762,689 - LRK53_RS03245 0.46 -0.7
762,751 + LRK53_RS03245 0.52 +0.3
762,751 + LRK53_RS03245 0.52 -0.6
762,752 - LRK53_RS03245 0.52 -0.8
762,752 - LRK53_RS03245 0.52 -0.6
762,805 + LRK53_RS03245 0.57 -0.9
762,805 + LRK53_RS03245 0.57 +0.3
762,806 - LRK53_RS03245 0.57 -0.8
762,806 - LRK53_RS03245 0.57 -1.3
762,806 - LRK53_RS03245 0.57 -1.7
762,806 - LRK53_RS03245 0.57 -1.3
762,806 - LRK53_RS03245 0.57 -1.6
762,883 + LRK53_RS03245 0.64 +0.3
762,916 + LRK53_RS03245 0.67 +0.3
762,916 + LRK53_RS03245 0.67 -2.3
762,962 - LRK53_RS03245 0.72 -1.2
762,962 - LRK53_RS03245 0.72 -0.3
762,962 - LRK53_RS03245 0.72 -2.7
762,962 - LRK53_RS03245 0.72 -1.0
763,081 + LRK53_RS03245 0.83 +0.3
763,184 - -0.3
763,184 - +0.7
763,560 + LRK53_RS03250 0.16 -0.5
763,560 + LRK53_RS03250 0.16 -0.5
763,560 + LRK53_RS03250 0.16 -1.7
763,560 + LRK53_RS03250 0.16 -1.5
763,561 - LRK53_RS03250 0.16 -0.2
763,662 + LRK53_RS03250 0.24 -0.9
763,662 + LRK53_RS03250 0.24 -1.9
763,662 + LRK53_RS03250 0.24 -0.0
763,662 + LRK53_RS03250 0.24 +2.8
763,663 - LRK53_RS03250 0.24 -1.3
763,668 + LRK53_RS03250 0.24 +1.2
763,668 + LRK53_RS03250 0.24 -1.7
763,669 - LRK53_RS03250 0.25 +0.7
763,669 - LRK53_RS03250 0.25 -2.2
763,669 - LRK53_RS03250 0.25 -1.4
763,881 + LRK53_RS03250 0.40 -0.8
763,980 + LRK53_RS03250 0.48 -1.1
763,980 + LRK53_RS03250 0.48 -0.7
763,980 + LRK53_RS03250 0.48 +0.4
763,980 + LRK53_RS03250 0.48 +1.2
763,981 - LRK53_RS03250 0.48 +0.2
763,981 - LRK53_RS03250 0.48 +1.0
763,981 - LRK53_RS03250 0.48 -0.3
763,981 - LRK53_RS03250 0.48 +1.1
763,981 - LRK53_RS03250 0.48 -1.2
763,981 - LRK53_RS03250 0.48 +0.1
763,981 - LRK53_RS03250 0.48 -0.3
763,981 - LRK53_RS03250 0.48 -0.5
763,981 - LRK53_RS03250 0.48 -1.5
763,981 - LRK53_RS03250 0.48 +0.4
763,981 - LRK53_RS03250 0.48 -0.8

Or see this region's nucleotide sequence