Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02845 and LRK53_RS02850 are separated by 336 nucleotides LRK53_RS02850 and LRK53_RS02855 are separated by 122 nucleotides LRK53_RS02855 and LRK53_RS02860 overlap by 4 nucleotides
LRK53_RS02845: LRK53_RS02845 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 659,305 to 659,793
_RS02845
LRK53_RS02850: LRK53_RS02850 - response regulator, at 660,130 to 660,564
_RS02850
LRK53_RS02855: LRK53_RS02855 - tetratricopeptide repeat protein, at 660,687 to 661,007
_RS02855
LRK53_RS02860: LRK53_RS02860 - glycosyltransferase family 39 protein, at 661,004 to 662,743
_RS02860
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 660.217 kb on + strand, within LRK53_RS02850 at 660.217 kb on + strand, within LRK53_RS02850 at 660.218 kb on - strand, within LRK53_RS02850 at 660.300 kb on - strand, within LRK53_RS02850 at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.568 kb on + strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.569 kb on - strand at 660.688 kb on + strand at 660.689 kb on - strand at 660.850 kb on + strand, within LRK53_RS02855 at 660.850 kb on + strand, within LRK53_RS02855 at 660.850 kb on + strand, within LRK53_RS02855 at 660.851 kb on - strand, within LRK53_RS02855 at 660.851 kb on - strand, within LRK53_RS02855 at 660.851 kb on - strand, within LRK53_RS02855 at 661.041 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 660,217 + LRK53_RS02850 0.20 +0.3 660,217 + LRK53_RS02850 0.20 -0.5 660,218 - LRK53_RS02850 0.20 -0.9 660,300 - LRK53_RS02850 0.39 -0.9 660,568 + -1.0 660,568 + -0.8 660,568 + -2.1 660,568 + -1.5 660,568 + -0.1 660,568 + -0.5 660,568 + -3.0 660,568 + -0.4 660,568 + -1.5 660,568 + +0.4 660,568 + -2.8 660,568 + -1.2 660,568 + -1.2 660,568 + -2.0 660,568 + +0.9 660,569 - -1.6 660,569 - -2.5 660,569 - +0.4 660,569 - +0.6 660,569 - -1.4 660,569 - -1.5 660,569 - -1.3 660,569 - -0.6 660,569 - +0.3 660,569 - -0.4 660,569 - +0.2 660,569 - -0.2 660,688 + -0.9 660,689 - -1.2 660,850 + LRK53_RS02855 0.51 -0.8 660,850 + LRK53_RS02855 0.51 -2.1 660,850 + LRK53_RS02855 0.51 -0.2 660,851 - LRK53_RS02855 0.51 -2.4 660,851 - LRK53_RS02855 0.51 -1.5 660,851 - LRK53_RS02855 0.51 -0.9 661,041 + -1.5
Or see this region's nucleotide sequence