Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02035 and LRK53_RS02040 are separated by 171 nucleotides LRK53_RS02040 and LRK53_RS02045 are separated by 484 nucleotides
LRK53_RS02035: LRK53_RS02035 - hypothetical protein, at 481,811 to 484,969
_RS02035
LRK53_RS02040: LRK53_RS02040 - hypothetical protein, at 485,141 to 485,521
_RS02040
LRK53_RS02045: LRK53_RS02045 - AAA family ATPase, at 486,006 to 487,793
_RS02045
Position (kb) 485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 484.151 kb on + strand, within LRK53_RS02035 at 484.172 kb on + strand, within LRK53_RS02035 at 484.173 kb on - strand, within LRK53_RS02035 at 484.226 kb on + strand, within LRK53_RS02035 at 484.226 kb on + strand, within LRK53_RS02035 at 484.226 kb on + strand, within LRK53_RS02035 at 484.227 kb on - strand, within LRK53_RS02035 at 484.227 kb on - strand, within LRK53_RS02035 at 484.227 kb on - strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.274 kb on + strand, within LRK53_RS02035 at 484.275 kb on - strand, within LRK53_RS02035 at 484.275 kb on - strand, within LRK53_RS02035 at 484.275 kb on - strand, within LRK53_RS02035 at 484.275 kb on - strand, within LRK53_RS02035 at 484.319 kb on + strand, within LRK53_RS02035 at 484.319 kb on + strand, within LRK53_RS02035 at 484.319 kb on + strand, within LRK53_RS02035 at 484.319 kb on + strand, within LRK53_RS02035 at 484.386 kb on - strand, within LRK53_RS02035 at 484.471 kb on - strand, within LRK53_RS02035 at 484.471 kb on - strand, within LRK53_RS02035 at 484.471 kb on - strand, within LRK53_RS02035 at 484.593 kb on - strand, within LRK53_RS02035 at 484.593 kb on - strand, within LRK53_RS02035 at 484.593 kb on - strand, within LRK53_RS02035 at 484.593 kb on - strand, within LRK53_RS02035 at 484.639 kb on - strand, within LRK53_RS02035 at 484.739 kb on + strand at 484.739 kb on + strand at 484.739 kb on + strand at 484.740 kb on - strand at 484.765 kb on + strand at 484.765 kb on + strand at 484.766 kb on - strand at 484.766 kb on - strand at 484.766 kb on - strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.827 kb on + strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.828 kb on - strand at 484.836 kb on - strand at 484.896 kb on - strand at 484.896 kb on - strand at 484.915 kb on - strand at 484.967 kb on + strand at 484.967 kb on + strand at 484.967 kb on + strand at 484.967 kb on + strand at 484.968 kb on - strand at 484.968 kb on - strand at 484.968 kb on - strand at 484.968 kb on - strand at 484.999 kb on + strand at 484.999 kb on + strand at 484.999 kb on + strand at 484.999 kb on + strand at 485.000 kb on - strand at 485.057 kb on + strand at 485.057 kb on + strand at 485.057 kb on + strand at 485.057 kb on + strand at 485.058 kb on - strand at 485.058 kb on - strand at 485.058 kb on - strand at 485.058 kb on - strand at 485.112 kb on - strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.136 kb on + strand at 485.137 kb on - strand at 485.137 kb on - strand at 485.140 kb on + strand at 485.141 kb on - strand at 485.182 kb on - strand, within LRK53_RS02040 at 485.222 kb on + strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.223 kb on - strand, within LRK53_RS02040 at 485.251 kb on - strand, within LRK53_RS02040 at 485.340 kb on - strand, within LRK53_RS02040 at 485.354 kb on - strand, within LRK53_RS02040 at 485.355 kb on + strand, within LRK53_RS02040 at 485.355 kb on + strand, within LRK53_RS02040 at 485.356 kb on - strand, within LRK53_RS02040 at 485.356 kb on - strand, within LRK53_RS02040 at 485.414 kb on + strand, within LRK53_RS02040 at 485.415 kb on - strand, within LRK53_RS02040 at 485.415 kb on - strand, within LRK53_RS02040 at 485.483 kb on + strand, within LRK53_RS02040 at 485.484 kb on - strand at 485.484 kb on - strand at 485.509 kb on + strand at 485.509 kb on + strand at 485.509 kb on + strand at 485.510 kb on - strand at 485.510 kb on - strand at 485.523 kb on + strand at 485.523 kb on + strand at 485.580 kb on + strand at 485.581 kb on - strand at 485.581 kb on - strand at 485.581 kb on - strand at 485.588 kb on + strand at 485.650 kb on - strand at 485.650 kb on - strand at 485.686 kb on + strand at 485.734 kb on + strand at 485.734 kb on + strand at 485.752 kb on + strand at 485.752 kb on + strand at 485.753 kb on - strand at 485.753 kb on - strand at 485.800 kb on - strand at 485.822 kb on + strand at 485.823 kb on - strand at 485.837 kb on - strand at 485.844 kb on - strand at 485.914 kb on + strand at 485.915 kb on - strand at 485.915 kb on - strand at 485.925 kb on - strand at 485.925 kb on - strand at 486.165 kb on + strand at 486.182 kb on + strand at 486.182 kb on + strand at 486.197 kb on - strand, within LRK53_RS02045 at 486.197 kb on - strand, within LRK53_RS02045 at 486.197 kb on - strand, within LRK53_RS02045 at 486.221 kb on + strand, within LRK53_RS02045 at 486.221 kb on + strand, within LRK53_RS02045 at 486.222 kb on - strand, within LRK53_RS02045 at 486.222 kb on - strand, within LRK53_RS02045 at 486.225 kb on - strand, within LRK53_RS02045 at 486.225 kb on - strand, within LRK53_RS02045 at 486.269 kb on - strand, within LRK53_RS02045 at 486.294 kb on + strand, within LRK53_RS02045 at 486.294 kb on + strand, within LRK53_RS02045 at 486.295 kb on - strand, within LRK53_RS02045 at 486.295 kb on - strand, within LRK53_RS02045 at 486.302 kb on - strand, within LRK53_RS02045 at 486.315 kb on + strand, within LRK53_RS02045 at 486.315 kb on + strand, within LRK53_RS02045 at 486.316 kb on - strand, within LRK53_RS02045 at 486.316 kb on - strand, within LRK53_RS02045 at 486.316 kb on - strand, within LRK53_RS02045 at 486.316 kb on - strand, within LRK53_RS02045 at 486.405 kb on + strand, within LRK53_RS02045 at 486.405 kb on + strand, within LRK53_RS02045 at 486.405 kb on + strand, within LRK53_RS02045 at 486.406 kb on - strand, within LRK53_RS02045 at 486.406 kb on - strand, within LRK53_RS02045 at 486.406 kb on - strand, within LRK53_RS02045 at 486.406 kb on - strand, within LRK53_RS02045 at 486.406 kb on - strand, within LRK53_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 484,151 + LRK53_RS02035 0.74 -1.0 484,172 + LRK53_RS02035 0.75 -0.3 484,173 - LRK53_RS02035 0.75 -1.6 484,226 + LRK53_RS02035 0.76 -2.1 484,226 + LRK53_RS02035 0.76 +1.7 484,226 + LRK53_RS02035 0.76 +1.1 484,227 - LRK53_RS02035 0.76 -0.8 484,227 - LRK53_RS02035 0.76 -0.9 484,227 - LRK53_RS02035 0.76 -0.6 484,274 + LRK53_RS02035 0.78 -1.1 484,274 + LRK53_RS02035 0.78 +1.1 484,274 + LRK53_RS02035 0.78 -0.4 484,274 + LRK53_RS02035 0.78 -0.1 484,274 + LRK53_RS02035 0.78 -0.7 484,274 + LRK53_RS02035 0.78 -1.4 484,274 + LRK53_RS02035 0.78 -1.1 484,274 + LRK53_RS02035 0.78 -0.1 484,275 - LRK53_RS02035 0.78 -0.7 484,275 - LRK53_RS02035 0.78 +0.5 484,275 - LRK53_RS02035 0.78 -0.4 484,275 - LRK53_RS02035 0.78 -0.2 484,319 + LRK53_RS02035 0.79 -2.0 484,319 + LRK53_RS02035 0.79 +1.2 484,319 + LRK53_RS02035 0.79 -1.8 484,319 + LRK53_RS02035 0.79 -0.9 484,386 - LRK53_RS02035 0.82 -1.3 484,471 - LRK53_RS02035 0.84 -0.2 484,471 - LRK53_RS02035 0.84 -0.1 484,471 - LRK53_RS02035 0.84 -1.0 484,593 - LRK53_RS02035 0.88 -0.1 484,593 - LRK53_RS02035 0.88 -0.2 484,593 - LRK53_RS02035 0.88 -1.0 484,593 - LRK53_RS02035 0.88 -0.1 484,639 - LRK53_RS02035 0.90 -1.2 484,739 + -0.3 484,739 + +0.1 484,739 + -0.5 484,740 - -2.0 484,765 + +0.7 484,765 + -2.4 484,766 - -0.6 484,766 - -0.6 484,766 - -1.0 484,827 + -1.3 484,827 + +0.1 484,827 + -0.1 484,827 + +0.3 484,827 + -0.8 484,827 + -1.8 484,827 + +1.7 484,827 + -0.0 484,827 + +0.3 484,827 + -0.3 484,827 + -0.3 484,827 + -0.8 484,828 - -1.1 484,828 - -2.2 484,828 - -0.1 484,828 - -0.7 484,828 - -1.3 484,828 - -0.9 484,828 - -1.0 484,828 - +1.7 484,828 - +1.2 484,828 - +0.8 484,836 - +0.1 484,896 - -0.9 484,896 - -0.3 484,915 - -0.4 484,967 + +1.0 484,967 + -0.6 484,967 + -1.7 484,967 + -0.7 484,968 - -2.1 484,968 - +1.1 484,968 - -0.0 484,968 - -0.4 484,999 + +0.3 484,999 + -0.3 484,999 + -0.4 484,999 + +0.4 485,000 - -0.7 485,057 + +1.2 485,057 + -0.4 485,057 + -0.0 485,057 + -1.4 485,058 - +0.2 485,058 - +1.2 485,058 - -1.6 485,058 - -0.2 485,112 - -0.2 485,136 + -0.7 485,136 + -1.4 485,136 + -0.1 485,136 + -0.4 485,136 + -0.2 485,136 + -0.5 485,136 + -0.3 485,136 + +0.9 485,136 + -1.1 485,137 - +0.1 485,137 - +0.4 485,140 + +1.1 485,141 - -1.8 485,182 - LRK53_RS02040 0.11 -0.9 485,222 + LRK53_RS02040 0.21 +0.3 485,223 - LRK53_RS02040 0.22 -0.2 485,223 - LRK53_RS02040 0.22 +0.9 485,223 - LRK53_RS02040 0.22 +0.2 485,223 - LRK53_RS02040 0.22 -0.3 485,223 - LRK53_RS02040 0.22 -0.3 485,223 - LRK53_RS02040 0.22 -1.3 485,251 - LRK53_RS02040 0.29 -1.1 485,340 - LRK53_RS02040 0.52 -2.0 485,354 - LRK53_RS02040 0.56 -0.7 485,355 + LRK53_RS02040 0.56 +2.1 485,355 + LRK53_RS02040 0.56 -0.8 485,356 - LRK53_RS02040 0.56 +1.9 485,356 - LRK53_RS02040 0.56 +0.6 485,414 + LRK53_RS02040 0.72 -0.6 485,415 - LRK53_RS02040 0.72 +0.1 485,415 - LRK53_RS02040 0.72 +0.2 485,483 + LRK53_RS02040 0.90 -0.9 485,484 - -0.8 485,484 - -0.4 485,509 + +0.6 485,509 + +1.9 485,509 + -2.1 485,510 - -2.5 485,510 - +0.3 485,523 + -0.3 485,523 + -2.5 485,580 + -2.5 485,581 - +0.1 485,581 - -0.8 485,581 - -2.5 485,588 + -0.5 485,650 - -2.4 485,650 - -1.6 485,686 + +0.3 485,734 + -1.1 485,734 + +0.3 485,752 + -1.0 485,752 + -1.7 485,753 - +0.3 485,753 - -0.6 485,800 - -0.2 485,822 + -0.8 485,823 - -0.4 485,837 - -2.3 485,844 - +0.6 485,914 + -3.8 485,915 - +2.4 485,915 - -0.1 485,925 - -1.1 485,925 - -1.0 486,165 + -0.4 486,182 + -1.3 486,182 + -1.0 486,197 - LRK53_RS02045 0.11 -0.7 486,197 - LRK53_RS02045 0.11 +1.4 486,197 - LRK53_RS02045 0.11 -1.0 486,221 + LRK53_RS02045 0.12 -0.5 486,221 + LRK53_RS02045 0.12 -2.2 486,222 - LRK53_RS02045 0.12 +0.8 486,222 - LRK53_RS02045 0.12 -0.2 486,225 - LRK53_RS02045 0.12 +1.5 486,225 - LRK53_RS02045 0.12 -0.3 486,269 - LRK53_RS02045 0.15 +0.1 486,294 + LRK53_RS02045 0.16 -1.4 486,294 + LRK53_RS02045 0.16 -1.5 486,295 - LRK53_RS02045 0.16 -0.7 486,295 - LRK53_RS02045 0.16 +1.1 486,302 - LRK53_RS02045 0.17 -1.1 486,315 + LRK53_RS02045 0.17 -0.2 486,315 + LRK53_RS02045 0.17 -1.1 486,316 - LRK53_RS02045 0.17 -1.0 486,316 - LRK53_RS02045 0.17 -0.6 486,316 - LRK53_RS02045 0.17 -1.0 486,316 - LRK53_RS02045 0.17 -0.3 486,405 + LRK53_RS02045 0.22 +0.1 486,405 + LRK53_RS02045 0.22 -0.3 486,405 + LRK53_RS02045 0.22 -0.8 486,406 - LRK53_RS02045 0.22 +1.5 486,406 - LRK53_RS02045 0.22 -0.4 486,406 - LRK53_RS02045 0.22 -1.9 486,406 - LRK53_RS02045 0.22 -0.8 486,406 - LRK53_RS02045 0.22 -1.2
Or see this region's nucleotide sequence