Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01470 and LRK53_RS01475 are separated by 136 nucleotides LRK53_RS01475 and LRK53_RS01480 are separated by 153 nucleotides LRK53_RS01480 and LRK53_RS01485 overlap by 41 nucleotides
LRK53_RS01470: LRK53_RS01470 - class I SAM-dependent rRNA methyltransferase, at 353,199 to 354,371
_RS01470
LRK53_RS01475: LRK53_RS01475 - hypothetical protein, at 354,508 to 354,942
_RS01475
LRK53_RS01480: LRK53_RS01480 - winged helix-turn-helix domain-containing protein, at 355,096 to 355,620
_RS01480
LRK53_RS01485: LRK53_RS01485 - IS630 family transposase, at 355,580 to 356,161
_RS01485
Position (kb) 354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 353.510 kb on - strand, within LRK53_RS01470 at 353.510 kb on - strand, within LRK53_RS01470 at 353.607 kb on + strand, within LRK53_RS01470 at 353.607 kb on + strand, within LRK53_RS01470 at 353.607 kb on + strand, within LRK53_RS01470 at 353.607 kb on + strand, within LRK53_RS01470 at 353.607 kb on + strand, within LRK53_RS01470 at 353.608 kb on - strand, within LRK53_RS01470 at 353.608 kb on - strand, within LRK53_RS01470 at 353.608 kb on - strand, within LRK53_RS01470 at 353.905 kb on + strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.906 kb on - strand, within LRK53_RS01470 at 353.983 kb on + strand, within LRK53_RS01470 at 353.983 kb on + strand, within LRK53_RS01470 at 353.983 kb on + strand, within LRK53_RS01470 at 353.983 kb on + strand, within LRK53_RS01470 at 353.983 kb on + strand, within LRK53_RS01470 at 353.984 kb on - strand, within LRK53_RS01470 at 353.984 kb on - strand, within LRK53_RS01470 at 353.984 kb on - strand, within LRK53_RS01470 at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.365 kb on + strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.366 kb on - strand at 354.689 kb on + strand, within LRK53_RS01475 at 354.690 kb on - strand, within LRK53_RS01475 at 354.690 kb on - strand, within LRK53_RS01475 at 354.690 kb on - strand, within LRK53_RS01475 at 354.806 kb on + strand, within LRK53_RS01475 at 354.806 kb on + strand, within LRK53_RS01475 at 354.807 kb on - strand, within LRK53_RS01475 at 354.887 kb on + strand, within LRK53_RS01475 at 354.887 kb on + strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.888 kb on - strand, within LRK53_RS01475 at 354.974 kb on + strand at 354.974 kb on + strand at 354.975 kb on - strand at 354.975 kb on - strand at 354.975 kb on - strand at 354.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 353,510 - LRK53_RS01470 0.27 -1.0 353,510 - LRK53_RS01470 0.27 +0.8 353,607 + LRK53_RS01470 0.35 -0.0 353,607 + LRK53_RS01470 0.35 -1.6 353,607 + LRK53_RS01470 0.35 -1.5 353,607 + LRK53_RS01470 0.35 -1.9 353,607 + LRK53_RS01470 0.35 -2.2 353,608 - LRK53_RS01470 0.35 -0.8 353,608 - LRK53_RS01470 0.35 -0.4 353,608 - LRK53_RS01470 0.35 -2.6 353,905 + LRK53_RS01470 0.60 +0.6 353,906 - LRK53_RS01470 0.60 -0.1 353,906 - LRK53_RS01470 0.60 -0.1 353,906 - LRK53_RS01470 0.60 -0.2 353,906 - LRK53_RS01470 0.60 +0.3 353,906 - LRK53_RS01470 0.60 -1.6 353,906 - LRK53_RS01470 0.60 -1.1 353,906 - LRK53_RS01470 0.60 -1.0 353,983 + LRK53_RS01470 0.67 -0.9 353,983 + LRK53_RS01470 0.67 +0.1 353,983 + LRK53_RS01470 0.67 +1.3 353,983 + LRK53_RS01470 0.67 -0.9 353,983 + LRK53_RS01470 0.67 +0.5 353,984 - LRK53_RS01470 0.67 -1.8 353,984 - LRK53_RS01470 0.67 -0.6 353,984 - LRK53_RS01470 0.67 -1.9 354,365 + -1.2 354,365 + -1.4 354,365 + -1.3 354,365 + -0.9 354,365 + -0.9 354,365 + -1.7 354,365 + -0.3 354,365 + -0.5 354,365 + -0.1 354,365 + -0.3 354,365 + -1.6 354,366 - +0.2 354,366 - -1.4 354,366 - -3.1 354,366 - -0.9 354,366 - -0.3 354,366 - +0.2 354,366 - -0.4 354,366 - -0.4 354,366 - -1.3 354,689 + LRK53_RS01475 0.42 -1.7 354,690 - LRK53_RS01475 0.42 -0.3 354,690 - LRK53_RS01475 0.42 +0.3 354,690 - LRK53_RS01475 0.42 -1.1 354,806 + LRK53_RS01475 0.69 -1.7 354,806 + LRK53_RS01475 0.69 -2.3 354,807 - LRK53_RS01475 0.69 -0.3 354,887 + LRK53_RS01475 0.87 +0.3 354,887 + LRK53_RS01475 0.87 -1.8 354,888 - LRK53_RS01475 0.87 +0.4 354,888 - LRK53_RS01475 0.87 -0.9 354,888 - LRK53_RS01475 0.87 -2.6 354,888 - LRK53_RS01475 0.87 -0.7 354,888 - LRK53_RS01475 0.87 -0.4 354,888 - LRK53_RS01475 0.87 -0.1 354,888 - LRK53_RS01475 0.87 +1.2 354,888 - LRK53_RS01475 0.87 -2.4 354,974 + -1.8 354,974 + -0.8 354,975 - -0.9 354,975 - -0.7 354,975 - +0.0 354,975 - -1.5
Or see this region's nucleotide sequence