Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44630 and QEN71_RS44635 are separated by 144 nucleotides QEN71_RS44635 and QEN71_RS44640 are separated by 109 nucleotides QEN71_RS44640 and QEN71_RS44645 are separated by 722 nucleotides QEN71_RS44645 and QEN71_RS44650 are separated by 78 nucleotides
QEN71_RS44630: QEN71_RS44630 - transposase zinc-binding domain-containing protein, at 393,420 to 393,659
_RS44630
QEN71_RS44635: QEN71_RS44635 - integrase, at 393,804 to 393,923
_RS44635
QEN71_RS44640: QEN71_RS44640 - transposase, at 394,033 to 394,503
_RS44640
QEN71_RS44645: QEN71_RS44645 - IS5/IS1182 family transposase, at 395,226 to 395,362
_RS44645
QEN71_RS44650: QEN71_RS44650 - IS5 family transposase, at 395,441 to 396,247
_RS44650
Position (kb) 394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 393.536 kb on + strand, within QEN71_RS44630 at 393.676 kb on - strand at 393.774 kb on + strand at 393.775 kb on - strand at 393.775 kb on - strand at 393.925 kb on + strand at 393.925 kb on + strand at 393.934 kb on - strand at 393.937 kb on + strand at 393.938 kb on - strand at 394.026 kb on + strand at 394.036 kb on - strand at 394.165 kb on + strand, within QEN71_RS44640 at 394.165 kb on + strand, within QEN71_RS44640 at 394.166 kb on - strand, within QEN71_RS44640 at 394.178 kb on - strand, within QEN71_RS44640 at 394.446 kb on + strand, within QEN71_RS44640 at 394.446 kb on + strand, within QEN71_RS44640 at 394.528 kb on + strand at 394.528 kb on + strand at 394.528 kb on + strand at 394.529 kb on - strand at 394.529 kb on - strand at 394.529 kb on - strand at 394.546 kb on - strand at 394.554 kb on + strand at 394.573 kb on + strand at 394.574 kb on - strand at 394.660 kb on + strand at 394.661 kb on - strand at 394.759 kb on - strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.854 kb on - strand at 394.854 kb on - strand at 394.854 kb on - strand at 394.916 kb on + strand at 394.916 kb on + strand at 394.924 kb on + strand at 394.924 kb on + strand at 394.924 kb on + strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.926 kb on + strand at 394.935 kb on + strand at 394.967 kb on + strand at 394.968 kb on - strand at 394.968 kb on - strand at 395.029 kb on + strand at 395.029 kb on + strand at 395.030 kb on - strand at 395.076 kb on - strand at 395.085 kb on + strand at 395.085 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.103 kb on + strand at 395.103 kb on + strand at 395.194 kb on + strand at 395.195 kb on - strand at 395.208 kb on + strand at 395.209 kb on - strand at 395.209 kb on - strand at 395.335 kb on + strand, within QEN71_RS44645 at 395.335 kb on + strand, within QEN71_RS44645 at 395.336 kb on - strand, within QEN71_RS44645 at 395.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 393,536 + QEN71_RS44630 0.48 -0.8 393,676 - +1.6 393,774 + +0.1 393,775 - -1.2 393,775 - -0.3 393,925 + -1.0 393,925 + -1.0 393,934 - -0.5 393,937 + +0.0 393,938 - -3.0 394,026 + +0.8 394,036 - -0.1 394,165 + QEN71_RS44640 0.28 -0.8 394,165 + QEN71_RS44640 0.28 +0.0 394,166 - QEN71_RS44640 0.28 +1.4 394,178 - QEN71_RS44640 0.31 -0.8 394,446 + QEN71_RS44640 0.88 -0.8 394,446 + QEN71_RS44640 0.88 +0.7 394,528 + +0.5 394,528 + +0.6 394,528 + +0.2 394,529 - +0.2 394,529 - -0.3 394,529 - +0.9 394,546 - +0.8 394,554 + +0.7 394,573 + +0.1 394,574 - -0.0 394,660 + +0.1 394,661 - -0.5 394,759 - -1.4 394,853 + +0.4 394,853 + +0.4 394,853 + +1.1 394,853 + +1.0 394,854 - -0.2 394,854 - -0.2 394,854 - -0.4 394,916 + +0.3 394,916 + +1.4 394,924 + +0.5 394,924 + +0.3 394,924 + +0.1 394,925 - -1.5 394,925 - +0.6 394,925 - +1.2 394,925 - +0.3 394,925 - -0.1 394,925 - +1.2 394,925 - +0.5 394,926 + -2.1 394,935 + -0.0 394,967 + +0.8 394,968 - -0.0 394,968 - -0.4 395,029 + +0.5 395,029 + +0.9 395,030 - -0.5 395,076 - -2.0 395,085 + +1.8 395,085 + -1.1 395,096 + +0.4 395,096 + +0.5 395,096 + +0.5 395,096 + +0.4 395,096 + -0.2 395,103 + -0.0 395,103 + -0.2 395,194 + +0.3 395,195 - +0.5 395,208 + +0.8 395,209 - +1.3 395,209 - +0.4 395,335 + QEN71_RS44645 0.80 +0.2 395,335 + QEN71_RS44645 0.80 +0.3 395,336 - QEN71_RS44645 0.80 +1.1 395,377 + +0.5
Or see this region's nucleotide sequence