Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42170 and QEN71_RS42175 are separated by 730 nucleotides QEN71_RS42175 and QEN71_RS42180 are separated by 181 nucleotides
QEN71_RS42170: QEN71_RS42170 - LysR family transcriptional regulator, at 515,949 to 516,845
_RS42170
QEN71_RS42175: QEN71_RS42175 - nif-specific transcriptional activator NifA, at 517,576 to 519,219
_RS42175
QEN71_RS42180: QEN71_RS42180 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 519,401 to 520,933
_RS42180
Position (kb) 517
518
519
520 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.636 kb on - strand, within QEN71_RS42170 at 516.671 kb on + strand, within QEN71_RS42170 at 516.710 kb on + strand, within QEN71_RS42170 at 516.710 kb on + strand, within QEN71_RS42170 at 516.711 kb on - strand, within QEN71_RS42170 at 516.711 kb on - strand, within QEN71_RS42170 at 516.713 kb on - strand, within QEN71_RS42170 at 516.713 kb on - strand, within QEN71_RS42170 at 516.741 kb on - strand, within QEN71_RS42170 at 516.844 kb on - strand at 516.844 kb on - strand at 516.912 kb on - strand at 516.913 kb on + strand at 516.913 kb on + strand at 516.913 kb on + strand at 517.079 kb on + strand at 517.125 kb on + strand at 517.232 kb on - strand at 517.270 kb on + strand at 517.293 kb on + strand at 517.306 kb on + strand at 517.307 kb on - strand at 517.333 kb on + strand at 517.334 kb on - strand at 517.334 kb on - strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.368 kb on + strand at 517.369 kb on - strand at 517.399 kb on + strand at 517.399 kb on + strand at 517.400 kb on - strand at 517.468 kb on + strand at 517.511 kb on - strand at 517.619 kb on + strand at 517.619 kb on + strand at 517.620 kb on - strand at 517.624 kb on + strand at 517.625 kb on - strand at 517.631 kb on + strand at 517.631 kb on + strand at 517.632 kb on - strand at 517.644 kb on - strand at 517.699 kb on + strand at 517.699 kb on + strand at 517.699 kb on + strand at 517.700 kb on - strand at 517.829 kb on + strand, within QEN71_RS42175 at 517.829 kb on + strand, within QEN71_RS42175 at 517.830 kb on - strand, within QEN71_RS42175 at 517.920 kb on - strand, within QEN71_RS42175 at 517.920 kb on - strand, within QEN71_RS42175 at 518.046 kb on + strand, within QEN71_RS42175 at 518.046 kb on + strand, within QEN71_RS42175 at 518.046 kb on + strand, within QEN71_RS42175 at 518.047 kb on - strand, within QEN71_RS42175 at 518.047 kb on - strand, within QEN71_RS42175 at 518.047 kb on - strand, within QEN71_RS42175 at 518.207 kb on + strand, within QEN71_RS42175 at 518.207 kb on + strand, within QEN71_RS42175 at 518.309 kb on + strand, within QEN71_RS42175 at 518.384 kb on + strand, within QEN71_RS42175 at 518.447 kb on + strand, within QEN71_RS42175 at 518.488 kb on - strand, within QEN71_RS42175 at 518.549 kb on + strand, within QEN71_RS42175 at 518.579 kb on + strand, within QEN71_RS42175 at 518.579 kb on + strand, within QEN71_RS42175 at 518.579 kb on + strand, within QEN71_RS42175 at 518.579 kb on + strand, within QEN71_RS42175 at 518.580 kb on - strand, within QEN71_RS42175 at 518.580 kb on - strand, within QEN71_RS42175 at 518.650 kb on + strand, within QEN71_RS42175 at 518.651 kb on - strand, within QEN71_RS42175 at 518.653 kb on + strand, within QEN71_RS42175 at 518.670 kb on - strand, within QEN71_RS42175 at 518.670 kb on - strand, within QEN71_RS42175 at 518.673 kb on + strand, within QEN71_RS42175 at 518.673 kb on + strand, within QEN71_RS42175 at 518.673 kb on + strand, within QEN71_RS42175 at 518.674 kb on - strand, within QEN71_RS42175 at 518.674 kb on - strand, within QEN71_RS42175 at 518.729 kb on - strand, within QEN71_RS42175 at 518.766 kb on - strand, within QEN71_RS42175 at 518.810 kb on - strand, within QEN71_RS42175 at 518.882 kb on + strand, within QEN71_RS42175 at 518.882 kb on + strand, within QEN71_RS42175 at 518.882 kb on + strand, within QEN71_RS42175 at 518.882 kb on + strand, within QEN71_RS42175 at 518.882 kb on + strand, within QEN71_RS42175 at 518.883 kb on - strand, within QEN71_RS42175 at 518.883 kb on - strand, within QEN71_RS42175 at 518.883 kb on - strand, within QEN71_RS42175 at 518.930 kb on + strand, within QEN71_RS42175 at 518.931 kb on - strand, within QEN71_RS42175 at 518.931 kb on - strand, within QEN71_RS42175 at 518.931 kb on - strand, within QEN71_RS42175 at 518.931 kb on - strand, within QEN71_RS42175 at 519.036 kb on + strand, within QEN71_RS42175 at 519.207 kb on - strand at 519.207 kb on - strand at 519.233 kb on - strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.236 kb on + strand at 519.237 kb on - strand at 519.237 kb on - strand at 519.237 kb on - strand at 519.426 kb on + strand at 519.426 kb on + strand at 519.426 kb on + strand at 519.427 kb on - strand at 519.427 kb on - strand at 519.705 kb on - strand, within QEN71_RS42180 at 519.705 kb on - strand, within QEN71_RS42180 at 519.777 kb on + strand, within QEN71_RS42180 at 519.777 kb on + strand, within QEN71_RS42180 at 519.778 kb on - strand, within QEN71_RS42180 at 519.780 kb on - strand, within QEN71_RS42180 at 519.816 kb on + strand, within QEN71_RS42180 at 519.817 kb on - strand, within QEN71_RS42180 at 519.864 kb on + strand, within QEN71_RS42180 at 519.864 kb on + strand, within QEN71_RS42180 at 519.865 kb on - strand, within QEN71_RS42180 at 519.967 kb on + strand, within QEN71_RS42180 at 519.967 kb on + strand, within QEN71_RS42180 at 519.985 kb on + strand, within QEN71_RS42180 at 519.985 kb on + strand, within QEN71_RS42180 at 519.986 kb on - strand, within QEN71_RS42180 at 519.986 kb on - strand, within QEN71_RS42180 at 519.986 kb on - strand, within QEN71_RS42180 at 519.986 kb on - strand, within QEN71_RS42180 at 519.988 kb on + strand, within QEN71_RS42180 at 519.988 kb on + strand, within QEN71_RS42180 at 519.988 kb on + strand, within QEN71_RS42180 at 520.002 kb on - strand, within QEN71_RS42180 at 520.003 kb on + strand, within QEN71_RS42180 at 520.003 kb on + strand, within QEN71_RS42180 at 520.004 kb on - strand, within QEN71_RS42180 at 520.060 kb on + strand, within QEN71_RS42180 at 520.060 kb on + strand, within QEN71_RS42180 at 520.061 kb on - strand, within QEN71_RS42180 at 520.061 kb on - strand, within QEN71_RS42180 at 520.061 kb on - strand, within QEN71_RS42180 at 520.062 kb on + strand, within QEN71_RS42180 at 520.062 kb on + strand, within QEN71_RS42180 at 520.062 kb on + strand, within QEN71_RS42180 at 520.063 kb on - strand, within QEN71_RS42180 at 520.063 kb on - strand, within QEN71_RS42180 at 520.063 kb on - strand, within QEN71_RS42180 at 520.092 kb on - strand, within QEN71_RS42180 at 520.130 kb on - strand, within QEN71_RS42180 at 520.130 kb on - strand, within QEN71_RS42180 at 520.130 kb on - strand, within QEN71_RS42180 at 520.197 kb on - strand, within QEN71_RS42180 at 520.197 kb on - strand, within QEN71_RS42180
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 516,636 - QEN71_RS42170 0.77 +0.8 516,671 + QEN71_RS42170 0.80 +0.5 516,710 + QEN71_RS42170 0.85 -0.5 516,710 + QEN71_RS42170 0.85 -0.4 516,711 - QEN71_RS42170 0.85 +0.2 516,711 - QEN71_RS42170 0.85 -0.0 516,713 - QEN71_RS42170 0.85 -0.8 516,713 - QEN71_RS42170 0.85 -0.0 516,741 - QEN71_RS42170 0.88 +0.7 516,844 - -2.4 516,844 - +0.2 516,912 - +2.4 516,913 + -1.7 516,913 + +2.2 516,913 + -1.1 517,079 + -1.7 517,125 + -0.9 517,232 - +0.8 517,270 + +0.3 517,293 + +0.1 517,306 + -0.1 517,307 - -0.5 517,333 + -1.4 517,334 - +0.9 517,334 - +0.0 517,365 + -1.1 517,365 + +2.2 517,368 + -0.9 517,369 - -0.6 517,399 + +0.9 517,399 + -1.7 517,400 - -0.0 517,468 + -0.7 517,511 - +0.4 517,619 + -0.1 517,619 + -1.0 517,620 - +0.5 517,624 + -0.9 517,625 - -1.2 517,631 + +0.4 517,631 + +1.1 517,632 - -0.8 517,644 - -0.3 517,699 + +0.2 517,699 + +0.2 517,699 + +2.2 517,700 - -0.9 517,829 + QEN71_RS42175 0.15 -1.5 517,829 + QEN71_RS42175 0.15 +0.0 517,830 - QEN71_RS42175 0.15 +1.3 517,920 - QEN71_RS42175 0.21 -0.6 517,920 - QEN71_RS42175 0.21 +0.9 518,046 + QEN71_RS42175 0.29 +0.4 518,046 + QEN71_RS42175 0.29 -0.8 518,046 + QEN71_RS42175 0.29 -1.1 518,047 - QEN71_RS42175 0.29 -0.8 518,047 - QEN71_RS42175 0.29 -0.6 518,047 - QEN71_RS42175 0.29 +0.6 518,207 + QEN71_RS42175 0.38 +0.6 518,207 + QEN71_RS42175 0.38 +0.9 518,309 + QEN71_RS42175 0.45 -0.2 518,384 + QEN71_RS42175 0.49 -0.6 518,447 + QEN71_RS42175 0.53 -1.1 518,488 - QEN71_RS42175 0.55 -0.5 518,549 + QEN71_RS42175 0.59 -0.7 518,579 + QEN71_RS42175 0.61 +0.1 518,579 + QEN71_RS42175 0.61 -1.8 518,579 + QEN71_RS42175 0.61 -0.7 518,579 + QEN71_RS42175 0.61 -0.1 518,580 - QEN71_RS42175 0.61 +0.6 518,580 - QEN71_RS42175 0.61 +0.4 518,650 + QEN71_RS42175 0.65 -2.0 518,651 - QEN71_RS42175 0.65 -0.3 518,653 + QEN71_RS42175 0.66 +0.1 518,670 - QEN71_RS42175 0.67 -1.1 518,670 - QEN71_RS42175 0.67 +0.0 518,673 + QEN71_RS42175 0.67 +0.0 518,673 + QEN71_RS42175 0.67 +0.0 518,673 + QEN71_RS42175 0.67 +0.2 518,674 - QEN71_RS42175 0.67 -0.3 518,674 - QEN71_RS42175 0.67 -1.0 518,729 - QEN71_RS42175 0.70 -0.2 518,766 - QEN71_RS42175 0.72 -0.3 518,810 - QEN71_RS42175 0.75 +1.6 518,882 + QEN71_RS42175 0.79 +0.3 518,882 + QEN71_RS42175 0.79 +0.6 518,882 + QEN71_RS42175 0.79 -1.8 518,882 + QEN71_RS42175 0.79 -1.3 518,882 + QEN71_RS42175 0.79 +0.2 518,883 - QEN71_RS42175 0.80 -0.2 518,883 - QEN71_RS42175 0.80 -1.9 518,883 - QEN71_RS42175 0.80 -2.3 518,930 + QEN71_RS42175 0.82 -0.6 518,931 - QEN71_RS42175 0.82 -0.4 518,931 - QEN71_RS42175 0.82 +0.1 518,931 - QEN71_RS42175 0.82 -0.3 518,931 - QEN71_RS42175 0.82 -0.8 519,036 + QEN71_RS42175 0.89 +0.4 519,207 - -0.8 519,207 - -0.4 519,233 - -0.5 519,236 + -0.3 519,236 + -1.4 519,236 + -1.1 519,236 + +1.5 519,236 + -0.8 519,236 + -1.3 519,236 + -0.0 519,237 - -0.4 519,237 - -0.3 519,237 - +0.3 519,426 + +0.3 519,426 + +0.9 519,426 + -0.9 519,427 - +0.3 519,427 - +0.3 519,705 - QEN71_RS42180 0.20 -2.5 519,705 - QEN71_RS42180 0.20 -0.1 519,777 + QEN71_RS42180 0.25 +0.8 519,777 + QEN71_RS42180 0.25 -1.3 519,778 - QEN71_RS42180 0.25 +0.6 519,780 - QEN71_RS42180 0.25 -0.6 519,816 + QEN71_RS42180 0.27 -0.9 519,817 - QEN71_RS42180 0.27 -0.5 519,864 + QEN71_RS42180 0.30 -0.0 519,864 + QEN71_RS42180 0.30 +1.9 519,865 - QEN71_RS42180 0.30 -0.4 519,967 + QEN71_RS42180 0.37 -0.7 519,967 + QEN71_RS42180 0.37 -0.9 519,985 + QEN71_RS42180 0.38 -1.8 519,985 + QEN71_RS42180 0.38 -0.3 519,986 - QEN71_RS42180 0.38 -0.1 519,986 - QEN71_RS42180 0.38 -2.0 519,986 - QEN71_RS42180 0.38 -0.2 519,986 - QEN71_RS42180 0.38 -0.9 519,988 + QEN71_RS42180 0.38 -0.1 519,988 + QEN71_RS42180 0.38 -0.1 519,988 + QEN71_RS42180 0.38 +0.2 520,002 - QEN71_RS42180 0.39 +0.6 520,003 + QEN71_RS42180 0.39 -0.1 520,003 + QEN71_RS42180 0.39 +0.5 520,004 - QEN71_RS42180 0.39 -0.4 520,060 + QEN71_RS42180 0.43 -0.9 520,060 + QEN71_RS42180 0.43 +1.9 520,061 - QEN71_RS42180 0.43 +0.7 520,061 - QEN71_RS42180 0.43 +1.3 520,061 - QEN71_RS42180 0.43 +0.2 520,062 + QEN71_RS42180 0.43 -0.6 520,062 + QEN71_RS42180 0.43 +0.4 520,062 + QEN71_RS42180 0.43 +0.4 520,063 - QEN71_RS42180 0.43 -1.9 520,063 - QEN71_RS42180 0.43 -1.0 520,063 - QEN71_RS42180 0.43 -0.2 520,092 - QEN71_RS42180 0.45 +0.8 520,130 - QEN71_RS42180 0.48 -2.0 520,130 - QEN71_RS42180 0.48 +0.8 520,130 - QEN71_RS42180 0.48 -0.6 520,197 - QEN71_RS42180 0.52 -0.3 520,197 - QEN71_RS42180 0.52 -0.6
Or see this region's nucleotide sequence