Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33965 and QEN71_RS33970 overlap by 4 nucleotides QEN71_RS33970 and QEN71_RS33975 are separated by 27 nucleotides QEN71_RS33975 and QEN71_RS33980 are separated by 104 nucleotides
QEN71_RS33965: QEN71_RS33965 - FMN-binding glutamate synthase family protein, at 935,410 to 936,777
_RS33965
QEN71_RS33970: QEN71_RS33970 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 936,774 to 937,673
_RS33970
QEN71_RS33975: QEN71_RS33975 - aspartate aminotransferase family protein, at 937,701 to 939,152
_RS33975
QEN71_RS33980: QEN71_RS33980 - CoA ester lyase, at 939,257 to 940,234
_RS33980
Position (kb) 937
938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 936.918 kb on + strand, within QEN71_RS33970 at 936.918 kb on + strand, within QEN71_RS33970 at 936.919 kb on - strand, within QEN71_RS33970 at 937.146 kb on + strand, within QEN71_RS33970 at 937.146 kb on + strand, within QEN71_RS33970 at 937.147 kb on - strand, within QEN71_RS33970 at 937.147 kb on - strand, within QEN71_RS33970 at 937.200 kb on + strand, within QEN71_RS33970 at 937.226 kb on + strand, within QEN71_RS33970 at 937.278 kb on - strand, within QEN71_RS33970 at 937.671 kb on + strand at 937.672 kb on - strand at 937.672 kb on - strand at 937.712 kb on + strand at 937.712 kb on + strand at 937.810 kb on + strand at 938.010 kb on + strand, within QEN71_RS33975 at 938.010 kb on + strand, within QEN71_RS33975 at 938.217 kb on - strand, within QEN71_RS33975 at 938.272 kb on - strand, within QEN71_RS33975 at 938.661 kb on + strand, within QEN71_RS33975 at 938.662 kb on - strand, within QEN71_RS33975 at 938.703 kb on + strand, within QEN71_RS33975 at 938.703 kb on + strand, within QEN71_RS33975 at 939.108 kb on + strand at 939.109 kb on - strand at 939.109 kb on - strand at 939.245 kb on + strand at 939.259 kb on - strand at 939.259 kb on - strand at 939.265 kb on + strand at 939.265 kb on + strand at 939.266 kb on - strand at 939.486 kb on + strand, within QEN71_RS33980 at 939.487 kb on - strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.522 kb on + strand, within QEN71_RS33980 at 939.523 kb on - strand, within QEN71_RS33980 at 939.733 kb on - strand, within QEN71_RS33980 at 939.733 kb on - strand, within QEN71_RS33980 at 939.979 kb on - strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.984 kb on + strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980 at 939.985 kb on - strand, within QEN71_RS33980
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 936,918 + QEN71_RS33970 0.16 -0.8 936,918 + QEN71_RS33970 0.16 +0.8 936,919 - QEN71_RS33970 0.16 +0.2 937,146 + QEN71_RS33970 0.41 -0.3 937,146 + QEN71_RS33970 0.41 -0.1 937,147 - QEN71_RS33970 0.41 -0.1 937,147 - QEN71_RS33970 0.41 -1.2 937,200 + QEN71_RS33970 0.47 +0.7 937,226 + QEN71_RS33970 0.50 -0.1 937,278 - QEN71_RS33970 0.56 -0.8 937,671 + +1.8 937,672 - -1.4 937,672 - -0.2 937,712 + -0.2 937,712 + -0.4 937,810 + -0.8 938,010 + QEN71_RS33975 0.21 -0.6 938,010 + QEN71_RS33975 0.21 +0.2 938,217 - QEN71_RS33975 0.36 -0.3 938,272 - QEN71_RS33975 0.39 +0.1 938,661 + QEN71_RS33975 0.66 -0.6 938,662 - QEN71_RS33975 0.66 +0.0 938,703 + QEN71_RS33975 0.69 -0.7 938,703 + QEN71_RS33975 0.69 +0.4 939,108 + +0.7 939,109 - -0.7 939,109 - +0.0 939,245 + +0.1 939,259 - -2.2 939,259 - +0.0 939,265 + +0.8 939,265 + -1.2 939,266 - -0.4 939,486 + QEN71_RS33980 0.23 -0.6 939,487 - QEN71_RS33980 0.24 +0.9 939,522 + QEN71_RS33980 0.27 -0.2 939,522 + QEN71_RS33980 0.27 -1.1 939,522 + QEN71_RS33980 0.27 -0.6 939,523 - QEN71_RS33980 0.27 -2.6 939,733 - QEN71_RS33980 0.49 -0.5 939,733 - QEN71_RS33980 0.49 +1.0 939,979 - QEN71_RS33980 0.74 +0.2 939,984 + QEN71_RS33980 0.74 +0.9 939,984 + QEN71_RS33980 0.74 -1.5 939,984 + QEN71_RS33980 0.74 -0.7 939,984 + QEN71_RS33980 0.74 +0.1 939,985 - QEN71_RS33980 0.74 -1.2 939,985 - QEN71_RS33980 0.74 -1.5 939,985 - QEN71_RS33980 0.74 -1.8 939,985 - QEN71_RS33980 0.74 -2.0 939,985 - QEN71_RS33980 0.74 -1.0 939,985 - QEN71_RS33980 0.74 +0.4
Or see this region's nucleotide sequence