Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32370 and QEN71_RS32375 are separated by 305 nucleotides QEN71_RS32375 and QEN71_RS32380 are separated by 136 nucleotides QEN71_RS32380 and QEN71_RS32385 overlap by 4 nucleotides
QEN71_RS32370: QEN71_RS32370 - M23 family metallopeptidase, at 602,707 to 603,717
_RS32370
QEN71_RS32375: QEN71_RS32375 - carboxypeptidase-like regulatory domain-containing protein, at 604,023 to 604,475
_RS32375
QEN71_RS32380: QEN71_RS32380 - VOC family protein, at 604,612 to 604,992
_RS32380
QEN71_RS32385: QEN71_RS32385 - MFS transporter, at 604,989 to 606,296
_RS32385
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.739 kb on + strand at 603.822 kb on + strand at 603.884 kb on - strand at 603.898 kb on - strand at 603.898 kb on - strand at 603.966 kb on + strand at 603.966 kb on + strand at 603.966 kb on + strand at 604.120 kb on + strand, within QEN71_RS32375 at 604.120 kb on + strand, within QEN71_RS32375 at 604.243 kb on + strand, within QEN71_RS32375 at 604.244 kb on - strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.351 kb on + strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.352 kb on - strand, within QEN71_RS32375 at 604.499 kb on + strand at 604.499 kb on + strand at 604.499 kb on + strand at 604.500 kb on - strand at 604.500 kb on - strand at 604.630 kb on + strand at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.664 kb on + strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.665 kb on - strand, within QEN71_RS32380 at 604.840 kb on + strand, within QEN71_RS32380 at 604.929 kb on - strand, within QEN71_RS32380 at 605.053 kb on + strand at 605.053 kb on + strand at 605.170 kb on + strand, within QEN71_RS32385 at 605.170 kb on + strand, within QEN71_RS32385 at 605.173 kb on + strand, within QEN71_RS32385 at 605.173 kb on + strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.174 kb on - strand, within QEN71_RS32385 at 605.185 kb on + strand, within QEN71_RS32385 at 605.302 kb on - strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.503 kb on + strand, within QEN71_RS32385 at 605.504 kb on - strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.510 kb on - strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.739 kb on - strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.791 kb on + strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.842 kb on + strand, within QEN71_RS32385 at 605.843 kb on - strand, within QEN71_RS32385
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 603,739 + -0.4 603,822 + +0.3 603,884 - +1.0 603,898 - -0.1 603,898 - -2.0 603,966 + +1.5 603,966 + +1.7 603,966 + -0.9 604,120 + QEN71_RS32375 0.21 -1.6 604,120 + QEN71_RS32375 0.21 -0.5 604,243 + QEN71_RS32375 0.49 +0.9 604,244 - QEN71_RS32375 0.49 -0.9 604,351 + QEN71_RS32375 0.72 +1.0 604,351 + QEN71_RS32375 0.72 +0.0 604,351 + QEN71_RS32375 0.72 +0.1 604,352 - QEN71_RS32375 0.73 +1.6 604,352 - QEN71_RS32375 0.73 +0.0 604,352 - QEN71_RS32375 0.73 -0.4 604,352 - QEN71_RS32375 0.73 +1.0 604,499 + -0.3 604,499 + +0.3 604,499 + -0.5 604,500 - -2.6 604,500 - +0.2 604,630 + -1.6 604,664 + QEN71_RS32380 0.14 -1.7 604,664 + QEN71_RS32380 0.14 +0.6 604,664 + QEN71_RS32380 0.14 -0.5 604,664 + QEN71_RS32380 0.14 +0.9 604,665 - QEN71_RS32380 0.14 -0.1 604,665 - QEN71_RS32380 0.14 -0.0 604,665 - QEN71_RS32380 0.14 +0.3 604,840 + QEN71_RS32380 0.60 -1.4 604,929 - QEN71_RS32380 0.83 +1.0 605,053 + -1.4 605,053 + +1.0 605,170 + QEN71_RS32385 0.14 +0.2 605,170 + QEN71_RS32385 0.14 -1.7 605,173 + QEN71_RS32385 0.14 -0.7 605,173 + QEN71_RS32385 0.14 -0.2 605,174 - QEN71_RS32385 0.14 -1.0 605,174 - QEN71_RS32385 0.14 -0.5 605,174 - QEN71_RS32385 0.14 -0.4 605,174 - QEN71_RS32385 0.14 +0.0 605,185 + QEN71_RS32385 0.15 -0.7 605,302 - QEN71_RS32385 0.24 -1.6 605,431 + QEN71_RS32385 0.34 +1.1 605,431 + QEN71_RS32385 0.34 -0.7 605,431 + QEN71_RS32385 0.34 -1.5 605,432 - QEN71_RS32385 0.34 -0.5 605,432 - QEN71_RS32385 0.34 -0.6 605,432 - QEN71_RS32385 0.34 +0.0 605,503 + QEN71_RS32385 0.39 +0.4 605,504 - QEN71_RS32385 0.39 +0.7 605,509 + QEN71_RS32385 0.40 -1.1 605,509 + QEN71_RS32385 0.40 -0.5 605,510 - QEN71_RS32385 0.40 +1.6 605,738 + QEN71_RS32385 0.57 -1.0 605,738 + QEN71_RS32385 0.57 +0.6 605,738 + QEN71_RS32385 0.57 -0.2 605,739 - QEN71_RS32385 0.57 +0.5 605,740 + QEN71_RS32385 0.57 +1.5 605,740 + QEN71_RS32385 0.57 -0.4 605,740 + QEN71_RS32385 0.57 +0.2 605,741 - QEN71_RS32385 0.57 -0.1 605,741 - QEN71_RS32385 0.57 +0.3 605,741 - QEN71_RS32385 0.57 +2.0 605,741 - QEN71_RS32385 0.57 +0.8 605,741 - QEN71_RS32385 0.57 +0.1 605,791 + QEN71_RS32385 0.61 +0.2 605,792 - QEN71_RS32385 0.61 -0.4 605,792 - QEN71_RS32385 0.61 -0.9 605,842 + QEN71_RS32385 0.65 -0.1 605,843 - QEN71_RS32385 0.65 -0.6
Or see this region's nucleotide sequence