Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29940 and QEN71_RS29945 are separated by 183 nucleotides QEN71_RS29945 and QEN71_RS29950 are separated by 123 nucleotides
QEN71_RS29940: QEN71_RS29940 - hypothetical protein, at 62,991 to 63,263
_RS29940
QEN71_RS29945: QEN71_RS29945 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 63,447 to 65,567
_RS29945
QEN71_RS29950: QEN71_RS29950 - LysR family transcriptional regulator, at 65,691 to 66,608
_RS29950
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 62.514 kb on + strand at 62.514 kb on + strand at 62.515 kb on - strand at 62.515 kb on - strand at 62.516 kb on + strand at 62.517 kb on - strand at 62.542 kb on + strand at 62.542 kb on + strand at 62.542 kb on + strand at 62.543 kb on - strand at 62.605 kb on + strand at 62.605 kb on + strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.606 kb on - strand at 62.616 kb on + strand at 62.616 kb on + strand at 62.616 kb on + strand at 62.616 kb on + strand at 62.616 kb on + strand at 62.617 kb on - strand at 62.617 kb on - strand at 62.636 kb on + strand at 62.636 kb on + strand at 62.636 kb on + strand at 62.636 kb on + strand at 62.636 kb on + strand at 62.637 kb on - strand at 62.637 kb on - strand at 62.637 kb on - strand at 62.650 kb on + strand at 62.650 kb on + strand at 62.661 kb on - strand at 62.661 kb on - strand at 62.765 kb on - strand at 62.765 kb on - strand at 62.767 kb on + strand at 62.767 kb on + strand at 62.767 kb on + strand at 62.768 kb on - strand at 62.768 kb on - strand at 62.768 kb on - strand at 62.768 kb on - strand at 62.768 kb on - strand at 62.768 kb on - strand at 62.769 kb on + strand at 62.770 kb on - strand at 62.770 kb on - strand at 62.770 kb on - strand at 62.836 kb on - strand at 62.861 kb on + strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.867 kb on + strand at 62.867 kb on + strand at 62.867 kb on + strand at 62.867 kb on + strand at 62.868 kb on - strand at 62.868 kb on - strand at 62.871 kb on + strand at 62.872 kb on - strand at 62.897 kb on + strand at 62.898 kb on - strand at 62.898 kb on - strand at 63.261 kb on + strand at 63.262 kb on - strand at 63.281 kb on - strand at 63.411 kb on + strand at 63.417 kb on + strand at 63.418 kb on - strand at 63.418 kb on - strand at 63.418 kb on - strand at 63.592 kb on + strand at 63.592 kb on + strand at 63.593 kb on - strand at 63.721 kb on + strand, within QEN71_RS29945 at 63.721 kb on + strand, within QEN71_RS29945 at 63.721 kb on + strand, within QEN71_RS29945 at 63.721 kb on + strand, within QEN71_RS29945 at 63.722 kb on - strand, within QEN71_RS29945 at 63.841 kb on + strand, within QEN71_RS29945 at 63.913 kb on + strand, within QEN71_RS29945 at 63.913 kb on + strand, within QEN71_RS29945 at 63.914 kb on - strand, within QEN71_RS29945 at 63.998 kb on - strand, within QEN71_RS29945 at 64.045 kb on + strand, within QEN71_RS29945 at 64.090 kb on + strand, within QEN71_RS29945 at 64.091 kb on - strand, within QEN71_RS29945 at 64.091 kb on - strand, within QEN71_RS29945 at 64.091 kb on - strand, within QEN71_RS29945 at 64.318 kb on + strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.319 kb on - strand, within QEN71_RS29945 at 64.447 kb on + strand, within QEN71_RS29945 at 64.447 kb on + strand, within QEN71_RS29945 at 64.448 kb on - strand, within QEN71_RS29945 at 64.448 kb on - strand, within QEN71_RS29945 at 64.448 kb on - strand, within QEN71_RS29945 at 64.448 kb on - strand, within QEN71_RS29945 at 64.528 kb on + strand, within QEN71_RS29945 at 64.529 kb on - strand, within QEN71_RS29945 at 65.078 kb on + strand, within QEN71_RS29945 at 65.078 kb on + strand, within QEN71_RS29945 at 65.550 kb on - strand at 65.624 kb on + strand at 65.624 kb on + strand at 65.625 kb on - strand at 65.790 kb on + strand, within QEN71_RS29950 at 65.790 kb on + strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.791 kb on - strand, within QEN71_RS29950 at 65.883 kb on + strand, within QEN71_RS29950 at 65.883 kb on + strand, within QEN71_RS29950 at 65.974 kb on + strand, within QEN71_RS29950 at 66.039 kb on + strand, within QEN71_RS29950 at 66.040 kb on - strand, within QEN71_RS29950 at 66.199 kb on - strand, within QEN71_RS29950 at 66.199 kb on - strand, within QEN71_RS29950 at 66.199 kb on - strand, within QEN71_RS29950 at 66.199 kb on - strand, within QEN71_RS29950 at 66.257 kb on + strand, within QEN71_RS29950 at 66.258 kb on - strand, within QEN71_RS29950 at 66.297 kb on + strand, within QEN71_RS29950 at 66.298 kb on - strand, within QEN71_RS29950 at 66.298 kb on - strand, within QEN71_RS29950 at 66.411 kb on + strand, within QEN71_RS29950 at 66.411 kb on + strand, within QEN71_RS29950 at 66.412 kb on - strand, within QEN71_RS29950 at 66.462 kb on - strand, within QEN71_RS29950 at 66.495 kb on + strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.496 kb on - strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.504 kb on + strand, within QEN71_RS29950 at 66.505 kb on - strand, within QEN71_RS29950 at 66.505 kb on - strand, within QEN71_RS29950 at 66.505 kb on - strand, within QEN71_RS29950 at 66.505 kb on - strand, within QEN71_RS29950
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 62,514 + -0.4 62,514 + +0.2 62,515 - +0.1 62,515 - -0.5 62,516 + -1.3 62,517 - -0.9 62,542 + -0.6 62,542 + -0.1 62,542 + +0.1 62,543 - +0.1 62,605 + +0.2 62,605 + -0.7 62,606 - +0.3 62,606 - +0.0 62,606 - -2.1 62,606 - +1.6 62,606 - +0.9 62,606 - +1.2 62,606 - -0.7 62,606 - +0.7 62,606 - +0.6 62,606 - +0.3 62,606 - -0.1 62,616 + -0.0 62,616 + +1.3 62,616 + +0.1 62,616 + +0.5 62,616 + -0.5 62,617 - +0.4 62,617 - -0.1 62,636 + -0.4 62,636 + +0.1 62,636 + -0.8 62,636 + -0.2 62,636 + -0.1 62,637 - -0.3 62,637 - -0.3 62,637 - -0.4 62,650 + -0.1 62,650 + +1.6 62,661 - -1.1 62,661 - +0.6 62,765 - +0.1 62,765 - +0.5 62,767 + +0.4 62,767 + -0.0 62,767 + -0.5 62,768 - +0.1 62,768 - -0.0 62,768 - -0.8 62,768 - +0.3 62,768 - +0.4 62,768 - -0.4 62,769 + -0.7 62,770 - +2.9 62,770 - +1.3 62,770 - -1.8 62,836 - -0.5 62,861 + -0.4 62,862 - +0.3 62,862 - -0.8 62,867 + +0.6 62,867 + -0.4 62,867 + +0.6 62,867 + +0.6 62,868 - +1.0 62,868 - -0.3 62,871 + +1.4 62,872 - -3.0 62,897 + -0.4 62,898 - -1.2 62,898 - +0.4 63,261 + +0.3 63,262 - -0.9 63,281 - -0.1 63,411 + -1.5 63,417 + -1.5 63,418 - +0.1 63,418 - -0.1 63,418 - +0.6 63,592 + -0.9 63,592 + -0.3 63,593 - -0.9 63,721 + QEN71_RS29945 0.13 +2.2 63,721 + QEN71_RS29945 0.13 -1.7 63,721 + QEN71_RS29945 0.13 -1.0 63,721 + QEN71_RS29945 0.13 -0.2 63,722 - QEN71_RS29945 0.13 +0.2 63,841 + QEN71_RS29945 0.19 -0.1 63,913 + QEN71_RS29945 0.22 -0.4 63,913 + QEN71_RS29945 0.22 -0.4 63,914 - QEN71_RS29945 0.22 -0.6 63,998 - QEN71_RS29945 0.26 +2.2 64,045 + QEN71_RS29945 0.28 +0.3 64,090 + QEN71_RS29945 0.30 -0.2 64,091 - QEN71_RS29945 0.30 -0.1 64,091 - QEN71_RS29945 0.30 -0.4 64,091 - QEN71_RS29945 0.30 -0.6 64,318 + QEN71_RS29945 0.41 -0.0 64,319 - QEN71_RS29945 0.41 +0.0 64,319 - QEN71_RS29945 0.41 +1.3 64,319 - QEN71_RS29945 0.41 +0.6 64,319 - QEN71_RS29945 0.41 +0.0 64,319 - QEN71_RS29945 0.41 -0.6 64,319 - QEN71_RS29945 0.41 -1.3 64,447 + QEN71_RS29945 0.47 +0.4 64,447 + QEN71_RS29945 0.47 +1.2 64,448 - QEN71_RS29945 0.47 +0.9 64,448 - QEN71_RS29945 0.47 +0.3 64,448 - QEN71_RS29945 0.47 +0.3 64,448 - QEN71_RS29945 0.47 -0.1 64,528 + QEN71_RS29945 0.51 -0.7 64,529 - QEN71_RS29945 0.51 -0.6 65,078 + QEN71_RS29945 0.77 +0.3 65,078 + QEN71_RS29945 0.77 +0.5 65,550 - -0.2 65,624 + -0.1 65,624 + -0.8 65,625 - -0.4 65,790 + QEN71_RS29950 0.11 -0.1 65,790 + QEN71_RS29950 0.11 -0.3 65,791 - QEN71_RS29950 0.11 -0.1 65,791 - QEN71_RS29950 0.11 -1.9 65,791 - QEN71_RS29950 0.11 +0.6 65,791 - QEN71_RS29950 0.11 -1.5 65,791 - QEN71_RS29950 0.11 -0.6 65,791 - QEN71_RS29950 0.11 -0.4 65,791 - QEN71_RS29950 0.11 +0.2 65,791 - QEN71_RS29950 0.11 -1.1 65,883 + QEN71_RS29950 0.21 +1.1 65,883 + QEN71_RS29950 0.21 +0.3 65,974 + QEN71_RS29950 0.31 -0.1 66,039 + QEN71_RS29950 0.38 -1.3 66,040 - QEN71_RS29950 0.38 +1.6 66,199 - QEN71_RS29950 0.55 -0.9 66,199 - QEN71_RS29950 0.55 +0.9 66,199 - QEN71_RS29950 0.55 -0.9 66,199 - QEN71_RS29950 0.55 -1.1 66,257 + QEN71_RS29950 0.62 -0.4 66,258 - QEN71_RS29950 0.62 -0.1 66,297 + QEN71_RS29950 0.66 -0.9 66,298 - QEN71_RS29950 0.66 -2.9 66,298 - QEN71_RS29950 0.66 -0.1 66,411 + QEN71_RS29950 0.78 +0.3 66,411 + QEN71_RS29950 0.78 +0.2 66,412 - QEN71_RS29950 0.79 +0.2 66,462 - QEN71_RS29950 0.84 -0.4 66,495 + QEN71_RS29950 0.88 -0.1 66,496 - QEN71_RS29950 0.88 +0.2 66,496 - QEN71_RS29950 0.88 -0.1 66,496 - QEN71_RS29950 0.88 +0.4 66,496 - QEN71_RS29950 0.88 -0.3 66,496 - QEN71_RS29950 0.88 +0.2 66,496 - QEN71_RS29950 0.88 -0.2 66,496 - QEN71_RS29950 0.88 +0.3 66,496 - QEN71_RS29950 0.88 -1.2 66,496 - QEN71_RS29950 0.88 -1.9 66,496 - QEN71_RS29950 0.88 -0.5 66,496 - QEN71_RS29950 0.88 +0.4 66,496 - QEN71_RS29950 0.88 -0.4 66,504 + QEN71_RS29950 0.89 -1.2 66,504 + QEN71_RS29950 0.89 -0.5 66,504 + QEN71_RS29950 0.89 +0.3 66,504 + QEN71_RS29950 0.89 +1.8 66,504 + QEN71_RS29950 0.89 -0.8 66,504 + QEN71_RS29950 0.89 -1.3 66,504 + QEN71_RS29950 0.89 -1.4 66,504 + QEN71_RS29950 0.89 -0.4 66,505 - QEN71_RS29950 0.89 -0.7 66,505 - QEN71_RS29950 0.89 +1.0 66,505 - QEN71_RS29950 0.89 -0.2 66,505 - QEN71_RS29950 0.89 +0.0
Or see this region's nucleotide sequence